diff --git a/joss.06898/10.21105.joss.06898.crossref.xml b/joss.06898/10.21105.joss.06898.crossref.xml new file mode 100644 index 0000000000..460f03a5a0 --- /dev/null +++ b/joss.06898/10.21105.joss.06898.crossref.xml @@ -0,0 +1,531 @@ + + + + 20240830130631-bc15b8ade1b038ce870604ce0d8bd9bdbb2baa45 + 20240830130631 + + JOSS Admin + admin@theoj.org + + The Open Journal + + + + + Journal of Open Source Software + JOSS + 2475-9066 + + 10.21105/joss + https://joss.theoj.org + + + + + 08 + 2024 + + + 9 + + 100 + + + + exoTEDRF: An EXOplanet Transit and Eclipse Data +Reduction Framework + + + + Michael + Radica + https://orcid.org/0000-0002-3328-1203 + + + + 08 + 30 + 2024 + + + 6898 + + + 10.21105/joss.06898 + + + http://creativecommons.org/licenses/by/4.0/ + http://creativecommons.org/licenses/by/4.0/ + http://creativecommons.org/licenses/by/4.0/ + + + + Software archive + 10.5281/zenodo.13370466 + + + GitHub review issue + https://github.com/openjournals/joss-reviews/issues/6898 + + + + 10.21105/joss.06898 + https://joss.theoj.org/papers/10.21105/joss.06898 + + + https://joss.theoj.org/papers/10.21105/joss.06898.pdf + + + + + + JWST calibration pipeline + Bushouse + 10.5281/zenodo.7038885 + 2022 + Bushouse, H., Eisenhamer, J., +Dencheva, N., Davies, J., Greenfield, P., Morrison, J., Hodge, P., +Simon, B., Grumm, D., Droettboom, M., Slavich, E., Sosey, M., Pauly, T., +Miller, T., Jedrzejewski, R., Hack, W., Davis, D., Crawford, S., Law, +D., … Jamieson, W. (2022). JWST calibration pipeline (Version 1.7.0). +Zenodo; Zenodo. +https://doi.org/10.5281/zenodo.7038885 + + + Exo-TiC/ExoTiC-LD: ExoTiC-LD +v3.0.0 + Grant + 10.5281/zenodo.7437681 + 2022 + Grant, D., & Wakeford, H. R. +(2022). Exo-TiC/ExoTiC-LD: ExoTiC-LD v3.0.0 (Version v3.0.0). Zenodo; +Zenodo. https://doi.org/10.5281/zenodo.7437681 + + + Eureka!: An End-to-End Pipeline for JWST +Time-Series Observations + Bell + Journal of Open Source +Software + 79 + 7 + 10.21105/joss.04503 + 2022 + Bell, T., Ahrer, E.-M., Brande, J., +Carter, A., Feinstein, A. D., Caloca, G., Mansfield, M., Zieba, S., +Piaulet, C., Benneke, B., Filippazzo, J., May, E., Roy, P.-A., +Kreidberg, L., & Stevenson, K. (2022). Eureka!: An End-to-End +Pipeline for JWST Time-Series Observations. Journal of Open Source +Software, 7(79), 4503. +https://doi.org/10.21105/joss.04503 + + + juliet: a versatile modelling tool for +transiting and non-transiting exoplanetary systems + Espinoza + Monthly Notices of the Royal Astronomical +Society + 2 + 490 + 10.1093/mnras/stz2688 + 2019 + Espinoza, N., Kossakowski, D., & +Brahm, R. (2019). juliet: a versatile modelling tool for transiting and +non-transiting exoplanetary systems. Monthly Notices of the Royal +Astronomical Society, 490(2), 2262–2283. +https://doi.org/10.1093/mnras/stz2688 + + + Early Release Science of the exoplanet +WASP-39b with JWST NIRISS + Feinstein + Nature + 7949 + 614 + 10.1038/s41586-022-05674-1 + 2023 + Feinstein, A. D., Radica, M., +Welbanks, L., Murray, C. A., Ohno, K., Coulombe, L.-P., Espinoza, N., +Bean, J. L., Teske, J. K., Benneke, B., Line, M. R., Rustamkulov, Z., +Saba, A., Tsiaras, A., Barstow, J. K., Fortney, J. J., Gao, P., Knutson, +H. A., MacDonald, R. J., … Zhang, X. (2023). Early Release Science of +the exoplanet WASP-39b with JWST NIRISS. Nature, 614(7949), 670–675. +https://doi.org/10.1038/s41586-022-05674-1 + + + A broadband thermal emission spectrum of the +ultra-hot Jupiter WASP-18b + Coulombe + Nature + 7973 + 620 + 10.1038/s41586-023-06230-1 + 2023 + Coulombe, L.-P., Benneke, B., +Challener, R., Piette, A. A. A., Wiser, L. S., Mansfield, M., MacDonald, +R. J., Beltz, H., Feinstein, A. D., Radica, M., Savel, A. B., Dos +Santos, L. A., Bean, J. L., Parmentier, V., Wong, I., Rauscher, E., +Komacek, T. D., Kempton, E. M.-R., Tan, X., … Wheatley, P. J. (2023). A +broadband thermal emission spectrum of the ultra-hot Jupiter WASP-18b. +Nature, 620(7973), 292–298. +https://doi.org/10.1038/s41586-023-06230-1 + + + Atmospheric Reconnaissance of TRAPPIST-1 b +with JWST/NIRISS: Evidence for Strong Stellar Contamination in the +Transmission Spectra + Lim + The Astrophysical Journal +Letters + 1 + 955 + 10.3847/2041-8213/acf7c4 + 2023 + Lim, O., Benneke, B., Doyon, R., +MacDonald, R. J., Piaulet, C., Artigau, É., Coulombe, L.-P., Radica, M., +L’Heureux, A., Albert, L., Rackham, B. V., de Wit, J., Salhi, S., Roy, +P.-A., Flagg, L., Fournier-Tondreau, M., Taylor, J., Cook, N. J., +Lafrenière, D., … Darveau-Bernier, A. (2023). Atmospheric Reconnaissance +of TRAPPIST-1 b with JWST/NIRISS: Evidence for Strong Stellar +Contamination in the Transmission Spectra. The Astrophysical Journal +Letters, 955(1), L22. +https://doi.org/10.3847/2041-8213/acf7c4 + + + The Near Infrared Imager and Slitless +Spectrograph for the James Webb Space Telescope. III. Single Object +Slitless Spectroscopy + Albert + Publications of the Astronomical Society of +the Pacific + 1049 + 135 + 10.1088/1538-3873/acd7a3 + 2023 + Albert, L., Lafrenière, D., René, +Doyon, Artigau, É., Volk, K., Goudfrooij, P., Martel, A. R., Radica, M., +Rowe, J., Espinoza, N., Roy, A., Filippazzo, J. C., Darveau-Bernier, A., +Talens, G. J., Sivaramakrishnan, A., Willott, C. J., Fullerton, A. W., +LaMassa, S., Hutchings, J. B., … Kaltenegger, L. (2023). The Near +Infrared Imager and Slitless Spectrograph for the James Webb Space +Telescope. III. Single Object Slitless Spectroscopy. Publications of the +Astronomical Society of the Pacific, 135(1049), 075001. +https://doi.org/10.1088/1538-3873/acd7a3 + + + Awesome SOSS: transmission spectroscopy of +WASP-96b with NIRISS/SOSS + Radica + Monthly Notices of the Royal Astronomical +Society + 1 + 524 + 10.1093/mnras/stad1762 + 2023 + Radica, M., Welbanks, L., Espinoza, +N., Taylor, J., Coulombe, L.-P., Feinstein, A. D., Goyal, J., Scarsdale, +N., Albert, L., Baghel, P., Bean, J. L., Blecic, J., Lafrenière, D., +MacDonald, R. J., Zamyatina, M., Allart1, R., Artigau, É., Batalha, N. +E., Cook, N. J., … Volk, K. (2023). Awesome SOSS: transmission +spectroscopy of WASP-96b with NIRISS/SOSS. Monthly Notices of the Royal +Astronomical Society, 524(1), 835–856. +https://doi.org/10.1093/mnras/stad1762 + + + Muted Features in the JWST NIRISS +Transmission Spectrum of Hot Neptune LTT 9779b + Radica + The Astrophysical Journal +Letters + 1 + 962 + 10.3847/2041-8213/ad20e4 + 2024 + Radica, M., Coulombe, L.-P., Taylor, +J., Albert, L., Allart, R., Benneke, B., Cowan, N. B., Dang, L., +Lafrenière, D., Thorngren, D., Artigau, É., Doyon, R., Flagg, L., +Johnstone, D., Pelletier, S., & Roy, P.-A. (2024). Muted Features in +the JWST NIRISS Transmission Spectrum of Hot Neptune LTT 9779b. The +Astrophysical Journal Letters, 962(1), L20. +https://doi.org/10.3847/2041-8213/ad20e4 + + + Near-infrared transmission spectroscopy of +HAT-P-18 b with NIRISS: Disentangling planetary and stellar features in +the era of JWST + Fournier-Tondreau + Monthly Notices of the Royal Astronomical +Society + 2 + 528 + 10.1093/mnras/stad3813 + 2024 + Fournier-Tondreau, M., MacDonald, R. +J., Radica, M., Lafrenière, D., Welbanks, L., Piaulet, C., Coulombe, +L.-P., Allart, R., Morel, K., Artigau, É., Albert, L., Lim, O., Doyon, +R., Benneke, B., Rowe, J. F., Darveau-Bernier, A., Cowan, N. B., Lewis, +N. K., Cook, N. J., … Turner, J. D. (2024). Near-infrared transmission +spectroscopy of HAT-P-18 b with NIRISS: Disentangling planetary and +stellar features in the era of JWST. Monthly Notices of the Royal +Astronomical Society, 528(2), 3354–3377. +https://doi.org/10.1093/mnras/stad3813 + + + JWST Reveals CH_4, CO_2, and H_2O in a +Metal-rich Miscible Atmosphere on a Two-Earth-Radius +Exoplanet + Benneke + arXiv e-prints + 10.48550/arXiv.2403.03325 + 2024 + Benneke, B., Roy, P.-A., Coulombe, +L.-P., Radica, M., Piaulet, C., Ahrer, E.-M., Pierrehumbert, R., +Krissansen-Totton, J., Schlichting, H. E., Hu, R., Yang, J., Christie, +D., Thorngren, D., Young, E. D., Pelletier, S., Knutson, H. A., Miguel, +Y., Evans-Soma, T. M., Dorn, C., … Allart, R. (2024). JWST Reveals CH_4, +CO_2, and H_2O in a Metal-rich Miscible Atmosphere on a Two-Earth-Radius +Exoplanet. arXiv e-Prints, arXiv:2403.03325. +https://doi.org/10.48550/arXiv.2403.03325 + + + PACMAN: A pipeline to reduce and analyze +Hubble Wide Field Camera 3 IR Grism data + Zieba + The Journal of Open Source +Software + 80 + 7 + 10.21105/joss.04838 + 2022 + Zieba, S., & Kreidberg, L. +(2022). PACMAN: A pipeline to reduce and analyze Hubble Wide Field +Camera 3 IR Grism data. The Journal of Open Source Software, 7(80), +4838. https://doi.org/10.21105/joss.04838 + + + Tshirt + Schlawin + GitHub repository + 2022 + Schlawin, E., & Glidic, K. +(2022). Tshirt. In GitHub repository. GitHub. +https://github.com/eas342/tshirt + + + nirHiss + Feinstein + GitHub repository + 2022 + Feinstein, A. D. (2022). nirHiss. In +GitHub repository. GitHub. +https://github.com/afeinstein20/nirhiss + + + Exo-TiC/ExoTiC-JEDI: +v0.1-beta-release + Alderson + 10.5281/zenodo.7185855 + 2022 + Alderson, L., Grant, D., & +Wakeford, H. (2022). Exo-TiC/ExoTiC-JEDI: v0.1-beta-release (Version +v0.1). Zenodo. +https://doi.org/10.5281/zenodo.7185855 + + + Exo-TiC/ExoTiC-MIRI: ExoTiC-MIRI +v1.0.0 + Grant + 10.5281/zenodo.8211207 + 2023 + Grant, D., Valentine, D. E., & +Wakeford, H. R. (2023). Exo-TiC/ExoTiC-MIRI: ExoTiC-MIRI v1.0.0 (Version +v1.0.0). Zenodo. +https://doi.org/10.5281/zenodo.8211207 + + + TransitSpectroscopy + Espinoza + 10.5281/zenodo.6960924 + 2022 + Espinoza, N. (2022). +TransitSpectroscopy (Version 0.3.11). Zenodo. +https://doi.org/10.5281/zenodo.6960924 + + + exoplanet: Gradient-based probabilistic +inference for exoplanet data & other astronomical time +series + Foreman-Mackey + The Journal of Open Source +Software + 62 + 6 + 10.21105/joss.03285 + 2021 + Foreman-Mackey, D., Luger, R., Agol, +E., Barclay, T., Bouma, L. G., Brandt, T. D., Czekala, I., David, T. J., +Dong, J., Gilbert, E. A., Gordon, T. A., Hedges, C., Hey, D. R., Morris, +B. M., Price-Whelan, A. M., & Savel, A. B. (2021). exoplanet: +Gradient-based probabilistic inference for exoplanet data & other +astronomical time series. The Journal of Open Source Software, 6(62), +3285. https://doi.org/10.21105/joss.03285 + + + APPLESOSS: A Producer of ProfiLEs for SOSS. +Application to the NIRISS SOSS Mode + Radica + Publications of the Astronomical Society of +the Pacific + 1040 + 134 + 10.1088/1538-3873/ac9430 + 2022 + Radica, M., Albert, L., Taylor, J., +Lafrenière, D., Coulombe, L.-P., Darveau-Bernier, A., Doyon, R., Cook, +N., Cowan, N., Espinoza, N., Johnstone, D., Kaltenegger, L., Piaulet, +C., Roy, A., & Talens, G. J. (2022). APPLESOSS: A Producer of +ProfiLEs for SOSS. Application to the NIRISS SOSS Mode. Publications of +the Astronomical Society of the Pacific, 134(1040), 104502. +https://doi.org/10.1088/1538-3873/ac9430 + + + ATOCA: an Algorithm to Treat Order +Contamination. Application to the NIRISS SOSS Mode + Darveau-Bernier + Publications of the Astronomical Society of +the Pacific + 1039 + 134 + 10.1088/1538-3873/ac8a77 + 2022 + Darveau-Bernier, A., Albert, L., +Talens, G. J., Lafrenière, D., Radica, M., Doyon, R., Cook, N. J., Rowe, +J. F., Allart, R., Artigau, É., Benneke, B., Cowan, N., Dang, L., +Espinoza, N., Johnstone, D., Kaltenegger, L., Lim, O., Pauly, T., +Pelletier, S., … Turner, J. D. (2022). ATOCA: an Algorithm to Treat +Order Contamination. Application to the NIRISS SOSS Mode. Publications +of the Astronomical Society of the Pacific, 134(1039), 094502. +https://doi.org/10.1088/1538-3873/ac8a77 + + + Matplotlib: A 2D graphics +environment + Hunter + Computing in Science & +Engineering + 3 + 9 + 10.1109/MCSE.2007.55 + 2007 + Hunter, J. D. (2007). Matplotlib: A +2D graphics environment. Computing in Science & Engineering, 9(3), +90–95. https://doi.org/10.1109/MCSE.2007.55 + + + Array programming with NumPy + Harris + Nature + 7825 + 585 + 10.1038/s41586-020-2649-2 + 2020 + Harris, C. R., Millman, K. J., Walt, +S. J. van der, Gommers, R., Virtanen, P., Cournapeau, D., Wieser, E., +Taylor, J., Berg, S., Smith, N. J., Kern, R., Picus, M., Hoyer, S., +Kerkwijk, M. H. van, Brett, M., Haldane, A., Río, J. F. del, Wiebe, M., +Peterson, P., … Oliphant, T. E. (2020). Array programming with NumPy. +Nature, 585(7825), 357–362. +https://doi.org/10.1038/s41586-020-2649-2 + + + Astropy: A community Python package for +astronomy + Astropy Collaboration + Astronomy & Astrophysics + 558 + 10.1051/0004-6361/201322068 + 2013 + Astropy Collaboration, Robitaille, T. +P., Tollerud, E. J., Greenfield, P., Droettboom, M., Bray, E., Aldcroft, +T., Davis, M., Ginsburg, A., Price-Whelan, A. M., Kerzendorf, W. E., +Conley, A., Crighton, N., Barbary, K., Muna, D., Ferguson, H., Grollier, +F., Parikh, M. M., Nair, P. H., … Streicher, O. (2013). Astropy: A +community Python package for astronomy. Astronomy & Astrophysics, +558, A33. +https://doi.org/10.1051/0004-6361/201322068 + + + The Astropy Project: Building an Open-science +Project and Status of the v2.0 Core Package + Astropy Collaboration + The Astronomical Journal + 3 + 156 + 10.3847/1538-3881/aabc4f + 2018 + Astropy Collaboration, Price-Whelan, +A. M., Sipőcz, B. M., Günther, H. M., Lim, P. L., Crawford, S. M., +Conseil, S., Shupe, D. L., Craig, M. W., Dencheva, N., Ginsburg, A., +VanderPlas, J. T., Bradley, L. D., Pérez-Suárez, D., de Val-Borro, M., +Aldcroft, T. L., Cruz, K. L., Robitaille, T. P., Tollerud, E. J., … +Astropy Contributors. (2018). The Astropy Project: Building an +Open-science Project and Status of the v2.0 Core Package. The +Astronomical Journal, 156(3), 123. +https://doi.org/10.3847/1538-3881/aabc4f + + + SciPy 1.0: Fundamental Algorithms for +Scientific Computing in Python + Virtanen + Nature Methods + 17 + 10.1038/s41592-019-0686-2 + 2020 + Virtanen, P., Gommers, R., Oliphant, +T. E., Haberland, M., Reddy, T., Cournapeau, D., Burovski, E., Peterson, +P., Weckesser, W., Bright, J., van der Walt, S. J., Brett, M., Wilson, +J., Millman, K. J., Mayorov, N., Nelson, A. R. J., Jones, E., Kern, R., +Larson, E., … SciPy 1.0 Contributors. (2020). SciPy 1.0: Fundamental +Algorithms for Scientific Computing in Python. Nature Methods, 17, +261–272. +https://doi.org/10.1038/s41592-019-0686-2 + + + Transmission Spectroscopy of the Habitable +Zone Exoplanet LHS 1140 b with JWST/NIRISS + Cadieux + The Astrophysical Journal +Letters + 1 + 970 + 10.3847/2041-8213/ad5afa + 2024 + Cadieux, C., Doyon, R., MacDonald, R. +J., Turbet, M., Artigau, É., Lim, O., Radica, M., Fauchez, T. J., Salhi, +S., Dang, L., Albert, L., Coulombe, L.-P., Cowan, N. B., Lafrenière, D., +L’Heureux, A., Piaulet, C., Benneke, B., Cloutier, R., Charnay, B., … +Valencia, D. (2024). Transmission Spectroscopy of the Habitable Zone +Exoplanet LHS 1140 b with JWST/NIRISS. The Astrophysical Journal +Letters, 970(1), L2. +https://doi.org/10.3847/2041-8213/ad5afa + + + Radicamc/exoUPRF: exoUPRF +v1.0.0 + Radica + 10.5281/zenodo.12628066 + 2024 + Radica, M. (2024). Radicamc/exoUPRF: +exoUPRF v1.0.0 (Version v1.0.0). Zenodo. +https://doi.org/10.5281/zenodo.12628066 + + + + + + diff --git a/joss.06898/10.21105.joss.06898.pdf b/joss.06898/10.21105.joss.06898.pdf new file mode 100644 index 0000000000..eb09c7a40f Binary files /dev/null and b/joss.06898/10.21105.joss.06898.pdf differ diff --git a/joss.06898/paper.jats/10.21105.joss.06898.jats b/joss.06898/paper.jats/10.21105.joss.06898.jats new file mode 100644 index 0000000000..db47c649f5 --- /dev/null +++ b/joss.06898/paper.jats/10.21105.joss.06898.jats @@ -0,0 +1,1404 @@ + + +
+ + + + +Journal of Open Source Software +JOSS + +2475-9066 + +Open Journals + + + +6898 +10.21105/joss.06898 + +exoTEDRF: An EXOplanet Transit and Eclipse Data Reduction +Framework + + + +https://orcid.org/0000-0002-3328-1203 + +Radica +Michael + + + + + +Trottier Institute for Research on Exoplanets (iREx), +Université de Montréal, Montréal, Canada + + + + +5 +7 +2024 + +9 +100 +6898 + +Authors of papers retain copyright and release the +work under a Creative Commons Attribution 4.0 International License (CC +BY 4.0) +2022 +The article authors + +Authors of papers retain copyright and release the work under +a Creative Commons Attribution 4.0 International License (CC BY +4.0) + + + +Python +Astronomy +JWST +Exoplanets +Teddy Bears + + + + + + Summary +

Since the start of science operations in July 2022, JWST has + delivered groundbreaking results on a regular basis. For spectroscopic + studies of exoplanet atmospheres the process of extracting robust and + reliable atmosphere spectra from the raw JWST observations is + critical. Especially as the field pushes to detect the signatures of + secondary atmospheres on rocky Earth-like planets it is imperative to + ensure that the spectral features that drive atmosphere inferences are + robust against the particular choices made during the data reduction + process.

+

Here, I present the community with exoTEDRF + (EXOplanet Transit and Eclipse Data Reduction Framework; formerly + known as supreme-SPOON), an end-to-end pipeline + for data reduction and light curve analysis of time series + observations (TSOs) of transiting exoplanets with JWST. The pipeline + is highly modular and designed to produce reliable spectra from raw + JWST exposures. exoTEDRF (pronounced + exo-tedorf) consists of four stages, each of which are further + subdivided into a series of steps. These steps can either be run + individually, for example in a Jupyter notebook, or via the command + line using the provided configuration files. The steps are highly + tunable, allowing full control over every parameter in the reduction. + Each step also produces diagnostic plots to allow the user to verify + their results at each intermediate stage, and compare outputs with + other pipelines if so desired. Finally, + exoTEDRF has also been designed to be run in + “batch” mode: simultaneously running multiple reductions, each + tweaking a subset of parameters, to understand any impacts on the + resulting atmosphere spectrum.

+
+ + Overview of exoTEDRF Stages +

Like similar pipelines (e.g. Eureka!, + Bell + et al., 2022; jwst, + Bushouse + et al., 2022), exoTEDRF is divided up + into four major stages which are summarized below:

+ + +

Stage 1, Detector-level processing: Converts raw, 4D + (integrations, groups, + + x-pixel, + + + y-pixel) + data frames to 3D (integrations, + + x-pixel, + + + y-pixel) + slope images. Steps include superbias subtractions, correction of + 1/ + + f + noise, ramp fitting, etc.

+
+ +

Stage 2, Spectroscopic processing: Performs additional + calibrations to prepare slope images for spectral extraction. + Steps include, flat field correction, background subtraction, + etc.

+
+ +

Stage 3, Spectral extraction: Extract the 2D stellar spectra + from the 3D slope images.

+
+ +

Stage 4, Light curve fitting: An optional stage for the fitting + of extracted light curves.

+
+
+

In exoTEDRF, Stage 4 is an optional + installation which is currently built around the + exoUPRF library + (Radica, + 2024), and incorporates tools such as + ExoTiC-LD + (Grant + & Wakeford, 2022) for the estimation of stellar + limb-darkening parameters. In certain places (e.g., superbias + subtraction, flat field correction), exoTEDRF + simply provides a wrapper around the existing functionalities of the + jwst package maintained by the Space Telescope + Science Institute.

+
+ + Statement of Need +

Data analysis is a challenging process that is encountered by all + observational studies. Ensuring that the resulting atmosphere spectra + are robust against particular choices made in the reduction process is + critical, especially as we push to characterize the atmospheres of + small rocky planets. The modularity and tunability of + exoTEDRF make it easy to run multiple + reductions of a given dataset, and therefore robustly ascertain + whether the spectral features driving atmosphere inferences are + robust, or sensitive to the peculiarities of a given reduction. + Moreover, exoTEDRF has full support for TSOs + with NIRISS/SOSS + (Albert + et al., 2023), an observing mode which is underserved by the + current ecosystem of JWST reduction tools, including being the only + pipeline with the ability to run the ATOCA + extraction algorithm + (Darveau-Bernier + et al., 2022; + Radica + et al., 2022) to explicitly model the SOSS order overlap.

+
+ + Documentation +

Documentation for exoTEDRF, including + example notebooks, is available at + https://exotedrf.readthedocs.io/en/latest/.

+
+ + Uses of exoTEDRF in Current Literature +

exoTEDRF (particularly in its previous life + as supreme-SPOON) has been widely applied to + exoplanet TSOs. A list of current literature which has made use of + exoTEDRF includes: Feinstein et al. + (2023), + Coulombe et al. + (2023), + Radica et al. + (2023), + Albert et al. + (2023), + Lim et al. + (2023), + Radica et al. + (2024), + Fournier-Tondreau et al. + (2024), + Benneke et al. + (2024), + and Cadieux et al. + (2024).

+
+ + Future Developments +

The current release of exoTEDRF (v2.0.0) + currently supports the reduction of TSOs observed with JWST + NIRISS/SOSS as well as NIRSpec/BOTS. Support for observations MIRI/LRS + is in development and will be added in the coming months. + exoTEDRF has also been applied to exoplanet + observations from the Hubble Space Telescope using the UVIS mode + (Radica et al., 2024b, in prep). This functionality will also be made + available to the public.

+

Suggestions for additional features are always welcome!

+
+ + Similar Tools +

The following is a list of other open source pipelines tailored to + exoplanet observations with JWST, some of which general purpose, and + others which are more tailored to specific instruments:

+ + +

General purpose: Eureka! + (Bell + et al., 2022), jwst + (Bushouse + et al., 2022), transitspectroscopy + (Nestor + Espinoza, 2022)

+
+ +

NIRISS specific: nirHiss + (Feinstein, + 2022)

+
+ +

NIRCam specific: tshirt + (Schlawin + & Glidic, 2022)

+
+ +

MIRI specific: PACMAN + (Zieba + & Kreidberg, 2022), ExoTiC-MIRI + (Grant + et al., 2023)

+
+ +

NIRSpec specific: ExoTiC-JEDI + (Alderson + et al., 2022)

+
+
+

Packages like exoplanet + (Foreman-Mackey + et al., 2021), Eureka! + (Bell + et al., 2022), and juliet + (Néstor + Espinoza et al., 2019) also enable similar light curve + fitting.

+
+ + Acknowledgements +

The foundations of exoTEDRF are built upon + many wonderful Python libraries, including + numpy + (Harris + et al., 2020), scipy + (Virtanen + et al., 2020), astropy + (Astropy + Collaboration et al., 2013, + 2018), + and matplotlib + (Hunter, + 2007).

+

MR acknowledges funding from the Natural Sciences and Engineering + Research Council of Canada, the Fonds de Recherche du Québec – Nature + et Technologies, and the Trottier Institute for Research on + Exoplanets. He would also like to thank the JWST Transiting Exoplanet + Community Early Release Science program for providing the forum where + much of the development of this pipeline occurred, and in particular, + Adina Feinstein, Louis-Philippe Coulombe, Néstor Espinoza, and Lili + Alderson for many helpful conversations.

+
+ + + + + + + + BushouseHoward + EisenhamerJonathan + DenchevaNadia + DaviesJames + GreenfieldPerry + MorrisonJane + HodgePhil + SimonBernie + GrummDavid + DroettboomMichael + SlavichEdward + SoseyMegan + PaulyTyler + MillerTodd + JedrzejewskiRobert + HackWarren + DavisDavid + CrawfordSteven + LawDavid + GordonKarl + ReganMichael + CaraMihai + MacDonaldKen + BradleyLarry + ShanahanClare + JamiesonWilliam + + JWST calibration pipeline + Zenodo; Zenodo + 202208 + https://doi.org/10.5281/zenodo.7038885 + 10.5281/zenodo.7038885 + + + + + + GrantDavid + WakefordHannah R. + + Exo-TiC/ExoTiC-LD: ExoTiC-LD v3.0.0 + Zenodo; Zenodo + 202212 + https://doi.org/10.5281/zenodo.7437681 + 10.5281/zenodo.7437681 + + + + + + BellTaylor + AhrerEva-Maria + BrandeJonathan + CarterAarynn + FeinsteinAdina D. + CalocaGiannina + MansfieldMegan + ZiebaSebastian + PiauletCaroline + BennekeBjörn + FilippazzoJoseph + MayErin + RoyPierre-Alexis + KreidbergLaura + StevensonKevin + + Eureka!: An End-to-End Pipeline for JWST Time-Series Observations + Journal of Open Source Software + 202211 + 7 + 79 + 10.21105/joss.04503 + 4503 + + + + + + + EspinozaNéstor + KossakowskiDiana + BrahmRafael + + juliet: a versatile modelling tool for transiting and non-transiting exoplanetary systems + Monthly Notices of the Royal Astronomical Society + 201912 + 490 + 2 + https://arxiv.org/abs/1812.08549 + 10.1093/mnras/stz2688 + 2262 + 2283 + + + + + + FeinsteinAdina D. + RadicaMichael + WelbanksLuis + MurrayCatriona Anne + OhnoKazumasa + CoulombeLouis-Philippe + EspinozaNéstor + BeanJacob L. + TeskeJohanna K. + BennekeBjörn + LineMichael R. + RustamkulovZafar + SabaArianna + TsiarasAngelos + BarstowJoanna K. + FortneyJonathan J. + GaoPeter + KnutsonHeather A. + MacDonaldRyan J. + Mikal-EvansThomas + RackhamBenjamin V. + TaylorJake + ParmentierVivien + BatalhaNatalie M. + Berta-ThompsonZachory K. + CarterAarynn L. + ChangeatQuentin + dos SantosLeonardo A. + GibsonNeale P. + GoyalJayesh M. + KreidbergLaura + López-MoralesMercedes + LothringerJoshua D. + MiguelYamila + MolaverdikhaniKaran + MoranSarah E. + MorelloGiuseppe + MukherjeeSagnick + SingDavid K. + StevensonKevin B. + WakefordHannah R. + AhrerEva-Maria + AlamMunazza K. + AldersonLili + AllenNatalie H. + BatalhaNatasha E. + BellTaylor J. + BlecicJasmina + BrandeJonathan + CaceresClaudio + CasewellS. 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