DESCRIPTION

Package: spacedeconv
Title: Unified Interface to spatial transcriptomics deconvolution tools
Version: 0.1.1
URL: https://omnideconv.github.io/spacedeconv
Authors@R: 
    person(given="Constantin", family="Zackl", email="constantin.zackl@student.uibk.ac.at", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-1991-6943"))
Description: Collection of 31 deconvolution tools for spatial transcriptomics data.
License: GPL-3 + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
VignetteBuilder: knitr
LazyData: FALSE
Depends: 
    R (>= 4.1.0)
Imports: 
    utils,
    methods,
    remotes,
    SingleCellExperiment,
    SpatialExperiment, 
    SummarizedExperiment,
    anndata, 
    edgeR, 
    ggplot2, 
    magrittr, 
    RColorBrewer, 
    S4Vectors, 
    Matrix, 
    colorspace, 
    sf, 
    ggpubr, 
    spatstat.geom, 
    spatstat.explore, 
    progress, 
    DelayedArray, 
    circlize, 
    cli, 
    patchwork, 
    reticulate, 
    corrplot, 
    ggridges, 
    testit, 
    decoupleR, 
    multimode, 
    psych,
    ComplexHeatmap, 
    grid, 
    grDevices, 
    stats, 
    OmnipathR, 
    scales, 
    Giotto
Suggests: 
    spacexr,
    SPOTlight,
    immunedeconv,
    omnideconv,
    devtools,
    pkgdown,
    rmarkdown,
    uuid,
    scran,
    CARD,
    knitr,
    testthat (>= 3.0.0),
    scuttle,
    tidyr,
    xCell, 
    MuSiC, 
    markdown, 
    EPIC,
    Seurat (<= 4.4.0),
    SeuratObject, 
    plotly, 
    Orthology.eg.db, 
    org.Mm.eg.db, 
    org.Hs.eg.db, 
    AnnotationDbi, 
    pbapply
Remotes:
    omnideconv/omnideconv, 
    omnideconv/immunedeconv,
    dmcable/spacexr,
    drieslab/Giotto,
    MarcElosua/SPOTlight,
    YingMa0107/CARD,
    drighelli/SpatialExperiment, 
    dviraran/xCell, 
    omnideconv/MuSiC
Config/testthat/edition: 3
Config/reticulate: 
  list(
    packages = list(
      list(package = "python-igraph"), 
      list(package = "leidenalg"),
      list(package = "python-louvain"), 
      list(package = "scikit-learn"), 
      list(package = "scanpy", pip=TRUE), 
      list(package = "cell2location", pip=TRUE),
      list(package = "scaden", pip = TRUE)
    )
  )