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ref_seq.fasta
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ref_seq.fasta
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>K03455.1 Human immunodeficiency virus type 1 (HXB2), complete genome; HIV1/HTLV-III/LAV reference genome
TGGAAGGGCTAATTCACTCCCAACGAAGACAAGATATCCTTGATCTGTGGATCTACCACACACAAGGCTA
CTTCCCTGATTAGCAGAACTACACACCAGGGCCAGGGATCAGATATCCACTGACCTTTGGATGGTGCTAC
AAGCTAGTACCAGTTGAGCCAGAGAAGTTAGAAGAAGCCAACAAAGGAGAGAACACCAGCTTGTTACACC
CTGTGAGCCTGCATGGAATGGATGACCCGGAGAGAGAAGTGTTAGAGTGGAGGTTTGACAGCCGCCTAGC
ATTTCATCACATGGCCCGAGAGCTGCATCCGGAGTACTTCAAGAACTGCTGACATCGAGCTTGCTACAAG
GGACTTTCCGCTGGGGACTTTCCAGGGAGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGAT
CCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGC
TCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTTCAAGTAGTGTG
TGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCCTTTTAGTCAGTGTGGAAAATCTCT
AGCAGTGGCGCCCGAACAGGGACCTGAAAGCGAAAGGGAAACCAGAGGAGCTCTCTCGACGCAGGACTCG
GCTTGCTGAAGCGCGCACGGCAAGAGGCGAGGGGCGGCGACTGGTGAGTACGCCAAAAATTTTGACTAGC
GGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTAGATCGATGGGAA
AAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAAATTAAAACATATAGTATGGGCAAGCAGGGAGC
TAGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCT
ACAACCATCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAGTAGCAACCCTCTATTGT
GTGCATCAAAGGATAGAGATAAAAGACACCAAGGAAGCTTTAGACAAGATAGAGGAAGAGCAAAACAAAA
GTAAGAAAAAAGCACAGCAAGCAGCAGCTGACACAGGACACAGCAATCAGGTCAGCCAAAATTACCCTAT
AGTGCAGAACATCCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAA
GTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTGATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCC
CACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGAC
CATCAATGAGGAAGCTGCAGAATGGGATAGAGTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAG
ATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGA
CAAATAATCCACCTATCCCAGTAGGAGAAATTTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGT
AAGAATGTATAGCCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTA
GACCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCT
TGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTATTTTAAAAGCATTGGGACCAGCGGCTACACTAGA
AGAAATGATGACAGCATGTCAGGGAGTAGGAGGACCCGGCCATAAGGCAAGAGTTTTGGCTGAAGCAATG
AGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAGAGGCAATTTTAGGAACCAAAGAAAGATTGTTA
AGTGTTTCAATTGTGGCAAAGAAGGGCACACAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTG
GAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATC
TGGCCTTCCTACAAGGGAAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAG
AGAGCTTCAGGTCTGGGGTAGAGACAACAACTCCCCCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTA
TCCTTTAACTTCCCTCAGGTCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAACTAA
AGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAA
ACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAATC
TGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGT
TGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGCCCTATTGAGACTGTACCAGTAAAATTAAAGCC
AGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATT
TGTACAGAGATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTAT
TTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAAC
TCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACA
GTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATGAAGACTTCAGGAAGTATACTGCATTTA
CCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAA
AGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGAC
ATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAA
AAATAGAGGAGCTGAGACAACATCTGTTGAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGA
ACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCA
GAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGGAAATTGAATTGGGCAAGTCAGATTT
ACCCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGAGGAACCAAAGCACTAACAGAAGTAATACC
ACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGAGAGATTCTAAAAGAACCAGTACATGGAGTG
TATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGCCAATGGACATATCAAA
TTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGA
TGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCT
AAATTTAAACTGCCCATACAAAAGGAAACATGGGAAACATGGTGGACAGAGTATTGGCAAGCCACCTGGA
TTCCTGAGTGGGAGTTTGTTAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCAT
AGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATAT
GTTACTAATAGAGGAAGACAAAAAGTTGTCACCCTAACTGACACAACAAATCAGAAGACTGAGTTACAAG
CAATTTATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGG
AATCATTCAAGCACAACCAGATCAAAGTGAATCAGAGTTAGTCAATCAAATAATAGAGCAGTTAATAAAA
AAGGAAAAGGTCTATCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAAT
TAGTCAGTGCTGGAATCAGGAAAGTACTATTTTTAGATGGAATAGATAAGGCCCAAGATGAACATGAGAA
ATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTA
GCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATAT
GGCAACTAGATTGTACACATTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATAT
AGAAGCAGAAGTTATTCCAGCAGAAACAGGGCAGGAAACAGCATATTTTCTTTTAAAATTAGCAGGAAGA
TGGCCAGTAAAAACAATACATACTGACAATGGCAGCAATTTCACCGGTGCTACGGTTAGGGCCGCCTGTT
GGTGGGCGGGAATCAAGCAGGAATTTGGAATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTAT
GAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAA
ATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAG
TAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCG
GGTTTATTACAGGGACAGCAGAAATCCACTTTGGAAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGG
GCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATT
ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAAAGTT
TAGTAAAACACCATATGTATGTTTCAGGGAAAGCTAGGGGATGGTTTTATAGACATCACTATGAAAGCCC
TCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAATAACAACATATTGG
GGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAAAGAGAT
ATAGCACACAAGTAGACCCTGAACTAGCAGACCAACTAATTCATCTGTATTACTTTGACTGTTTTTCAGA
CTCTGCTATAAGAAAGGCCTTATTAGGACACATAGTTAGCCCTAGGTGTGAATATCAAGCAGGACATAAC
AAGGTAGGATCTCTACAATACTTGGCACTAGCAGCATTAATAACACCAAAAAAGATAAAGCCACCTTTGC
CTAGTGTTACGAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCA
CACAATGAATGGACACTAGAGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACATTTTCCTAGGATTT
GGCTCCATGGCTTAGGGCAACATATCTATGAAACTTATGGGGATACTTGGGCAGGAGTGGAAGCCATAAT
AAGAATTCTGCAACAACTGCTGTTTATCCATTTTCAGAATTGGGTGTCGACATAGCAGAATAGGCGTTAC
TCGACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCATCCAGGAAGTCA
GCCTAAAACTGCTTGTACCAATTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAACA
AAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCATCAGAACAGTCAGA
CTCATCAAGCTTCTCTATCAAAGCAGTAAGTAGTACATGTAACGCAACCTATACCAATAGTAGCAATAGT
AGCATTAGTAGTAGCAATAATAATAGCAATAGTTGTGTGGTCCATAGTAATCATAGAATATAGGAAAATA
TTAAGACAAAGAAAAATAGACAGGTTAATTGATAGACTAATAGAAAGAGCAGAAGACAGTGGCAATGAGA
GTGAAGGAGAAATATCAGCACTTGTGGAGATGGGGGTGGAGATGGGGCACCATGCTCCTTGGGATGTTGA
TGATCTGTAGTGCTACAGAAAAATTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAGGAAGCAAC
CACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGATACAGAGGTACATAATGTTTGGGCCACACAT
GCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGTATTGGTAAATGTGACAGAAAATTTTAACATGT
GGAAAAATGACATGGTAGAACAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATG
TGTAAAATTAACCCCACTCTGTGTTAGTTTAAAGTGCACTGATTTGAAGAATGATACTAATACCAATAGT
AGTAGCGGGAGAATGATAATGGAGAAAGGAGAGATAAAAAACTGCTCTTTCAATATCAGCACAAGCATAA
GAGGTAAGGTGCAGAAAGAATATGCATTTTTTTATAAACTTGATATAATACCAATAGATAATGATACTAC
CAGCTATAAGTTGACAAGTTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCA
ATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAATGTAATAATAAGACGTTCAATGGAA
CAGGACCATGTACAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACT
GCTGTTAAATGGCAGTCTAGCAGAAGAAGAGGTAGTAATTAGATCTGTCAATTTCACGGACAATGCTAAA
ACCATAATAGTACAGCTGAACACATCTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAA
GAATCCGTATCCAGAGAGGACCAGGGAGAGCATTTGTTACAATAGGAAAAATAGGAAATATGAGACAAGC
ACATTGTAACATTAGTAGAGCAAAATGGAATAACACTTTAAAACAGATAGCTAGCAAATTAAGAGAACAA
TTTGGAAATAATAAAACAATAATCTTTAAGCAATCCTCAGGAGGGGACCCAGAAATTGTAACGCACAGTT
TTAATTGTGGAGGGGAATTTTTCTACTGTAATTCAACACAACTGTTTAATAGTACTTGGTTTAATAGTAC
TTGGAGTACTGAAGGGTCAAATAACACTGAAGGAAGTGACACAATCACCCTCCCATGCAGAATAAAACAA
ATTATAAACATGTGGCAGAAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGTGGACAAATTAGATGTT
CATCAAATATTACAGGGCTGCTATTAACAAGAGATGGTGGTAATAGCAACAATGAGTCCGAGATCTTCAG
ACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAA
CCATTAGGAGTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAG
GAGCTTTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCCTCAATGACGCTGACGGT
ACAGGCCAGACAATTATTGTCTGGTATAGTGCAGCAGCAGAACAATTTGCTGAGGGCTATTGAGGCGCAA
CAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAATCCTGGCTGTGGAAAGAT
ACCTAAAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCC
TTGGAATGCTAGTTGGAGTAATAAATCTCTGGAACAGATTTGGAATCACACGACCTGGATGGAGTGGGAC
AGAGAAATTAACAATTACACAAGCTTAATACACTCCTTAATTGAAGAATCGCAAAACCAGCAAGAAAAGA
ATGAACAAGAATTATTGGAATTAGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAATTGGCT
GTGGTATATAAAATTATTCATAATGATAGTAGGAGGCTTGGTAGGTTTAAGAATAGTTTTTGCTGTACTT
TCTATAGTGAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAACCCCGAGGG
GACCCGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGT
GAACGGATCCTTGGCACTTATCTGGGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGA
GACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATT
GGTGGAATCTCCTACAGTATTGGAGTCAGGAACTAAAGAATAGTGCTGTTAGCTTGCTCAATGCCACAGC
CATAGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAGGAGCTTGTAGAGCTATTCGCCAC
ATACCTAGAAGAATAAGACAGGGCTTGGAAAGGATTTTGCTATAAGATGGGTGGCAAGTGGTCAAAAAGT
AGTGTGATTGGATGGCCTACTGTAAGGGAAAGAATGAGACGAGCTGAGCCAGCAGCAGATAGGGTGGGAG
CAGCATCTCGAGACCTGGAAAAACATGGAGCAATCACAAGTAGCAATACAGCAGCTACCAATGCTGCTTG
TGCCTGGCTAGAAGCACAAGAGGAGGAGGAGGTGGGTTTTCCAGTCACACCTCAGGTACCTTTAAGACCA
ATGACTTACAAGGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTC
ACTCCCAAAGAAGACAAGATATCCTTGATCTGTGGATCTACCACACACAAGGCTACTTCCCTGATTAGCA
GAACTACACACCAGGGCCAGGGGTCAGATATCCACTGACCTTTGGATGGTGCTACAAGCTAGTACCAGTT
GAGCCAGATAAGATAGAAGAGGCCAATAAAGGAGAGAACACCAGCTTGTTACACCCTGTGAGCCTGCATG
GGATGGATGACCCGGAGAGAGAAGTGTTAGAGTGGAGGTTTGACAGCCGCCTAGCATTTCATCACGTGGC
CCGAGAGCTGCATCCGGAGTACTTCAAGAACTGCTGACATCGAGCTTGCTACAAGGGACTTTCCGCTGGG
GACTTTCCAGGGAGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATCCTGCATATAAGCAG
CTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAG
GGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTG
TGACTCTGGTAACTAGAGATCCCTCAGACCCTTTTAGTCAGTGTGGAAAATCTCTAGCA
>AY772699.1 HIV-1 isolate 04ZASK146B1 from South Africa, complete genome
TCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCTTCAGTGTTAGTGTGGAAAATCTCTAGCAGT
GGCGCCCGAACAGGGACCGGAAAGCGAAAGTAAAACCAGAGAAGATCTCTCGACGCAGGACTCGGCTTGC
TGAAGTGCACTCGGCAAGAGGCGAGAGCGGCGACTGGTGAGTACGCCAATTTTTATTTGACTAGCGGAGG
CTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTAAGAGGCGAAAAATTAGATACATGGGAAAAAAT
TAGGTTAAGGCCAGGGGGAAAGAAACACTATATGCTAAAACACATAGTATGGGCAAGCAGGGAGCTGGAA
AGATTTGCACTCAACCCTGGCCTTTTAGAAACATCAGAAGGCTGTAAACAAATATTGGCACAAATACAAC
CAGCTATTCAGACAGGAACAGAGGAACTTAAATCATTATTCAACACAATAGCAGTTCTCTATTGTGTACA
TAAAAAGATAGATGTAAGAGACACCAAGGAAGCCTTAGACAAGATAGAGGAAGAGCAAAACAAAAGTCAG
CAAAAAACACAGCAGGCAAAAGCGGCTGACGAAAAGGTCAGTCAAAATTTTCCTATAGTACAGAATCTTC
AAGGGCAAATGGTACATCAACCCCTATCACCTAGAACCTTGAATGCATGGGTAAAAGTAATAGAGGAGAA
GGGTTTTAACCCAGAGGTAATACCCATGTTTACAGCATTATCAGAGGGAGCCACCCCACAAGATTTGAAC
ACCATGCTAAATACGGTGGGGGGACATCAAGCAGCCATGCAGATGTTAAAAGATACCATCAATGAAGAGG
CTGCAGAATGGGATAGATTACATCCAGTACATGCAGGGCCTGTCGCACCAGGCCAAATGAGAGAACCAAG
GGGAAGTGACATAGCAGGAACTACTAGTAACCTTCAGGAACAAGTAGCATGGATGACAAGTAACCCACCT
ATTCCAGTGGGAGACATCTATAAAAGATGGATAATTCTGGGATTAAATAAAATAGTGAGGATGTATAGCC
CGGTCAGCATTTTGGACATAAAACAAGGGCCAAAGGAACCCTTTAGAGACTATGTAGATCGGTTCTTTAA
AACTTTAAGAGCTGAACAAGCTACACAAGAGGTAAAAAATTGGATGACAGACACCTTGTTGGTCCAAAAT
GCGAACCCAGATTGTAAGACCATTTTAAGAGCATTAGGACCAGGGGCTACATTAGAAGAAATGATGGCAG
CATGTCAAGGGGTGGGAGGACCTGGCCACAAGGCAAGAGTGTTGGCTGAGGCAATGAGCCAAATAAACAA
TGGAAACATAATGATGCAGAGAAGTAATTTTAAAGGCCCTAAAAGAATTGTTAAATGTTTTAACTGTGGC
AAGGGGAGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAAGGCTGTTGGAAATGTGGAAAGGAAG
GACACCAAATGAAAGACTGTACTGAAAGGCAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCCAGAAGGG
GAGGCCAGGGAATTTTCTCCAGAACAGACTAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTCGAG
GAGACGACCCCTGCTCCGAAACAGGAGCTGAAAGACAGGGAACCTTTAACTTCCCTCAGATCACTCTTTG
GCAGCGACCCCTTGTCTCAATAAAAATAGGGGGCCAGACAAGGGAGGCTCTCTTAGACACAGGAGCAGAT
GATACAGTATTAGAAGAAATAAATTTGCCAGGAAAATGGAAACCAAAAATGATAGGAGGAATTGGAGGTT
TTATCAAAGTAAGACAGTATGATCAGATACTTATAGAAATTTGTGGAAAAAAGGCTATAGGTACAGTATT
GGTAGGGCCTACACCTGTCAACATAATTGGAAGAAACATGTTGACTCAGCTTGGATGCACACTAAATTTT
CCAATTAGTCCCATTGAAACTGTACCAGTAAAACTGAAGCCAGGAATGGATGGCCCAAAGGTTAAACAAT
GGCCATTGTCAGAAGAGAAAATAAAAGCATTAACAGCAATTTGTGAGGAGATGGAGAAGGAAGGAAAAAT
TACAAAAATCGGGCCTGAAAATCCATATAACACCCCAATATTCGCCATAAAAAAGAAGGACAGTACTAAG
TGGAGAAAATTAGTAGATTTCAGGGAACTCAATAAAAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAA
TACCACATCCAGCAGGGTTAAAAAAGAAAAAATCAGTGACAGTACTAGATGTGGGGGATGCATATTTTTC
AGTTCCTCTAGATGAAGGCTTCAGGAAATATACTGCATTCACCATACCTAGTATAAACAATGAAACACCA
GGGATTAGATATCAATATAATGTGCTCCCACAGGGGTGGAAAGGATCACCAGCAATATTCCAAAGTAGCA
TGACAAAAATCTTAGAGCCCTTTAGAGCAAAAAATCCAGAAATAGCCATCTATCAATATATGGATGACTT
GTATGTAGGATCTGACTTAGAAATAGGGCAACATAGAGCAAAAATAGAAGAATTAAGAGAGCATCTATTA
AGGTGGGATTTACCACACCAGACAAGAAGCATCAGAAAGAACCCCCATTTCTTTGGATGGGGTATGAACT
TCATCCTGACAAATGGACAGTACAGCCTATACAGCTGCCAGAAAAGGATAGCTGGACTGTCAATGATATA
CAGAAGTTAGTGGGAAAATTAAACTGGGCAAGTCAGATTTATCCAGGGATTCAAGTAAAACAACTTTGTA
GACTCCTTAGGGGGGCCAAAGCACTAACAGACATAGTACCACTAACTGAAGAAGCAGAATTAGAATTGGC
AGAGAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTATATTATGACCCATCAAAGGACTTGATAGCT
GAAATACAGAAACAGGGGAATGACCAATGGACATATCAAATTTACCAAGAACCATTCAAAAATCTGAAGA
CAGGAAAGTATGCAAAAATGAGGACTGCACACACTAATGATGTAAGACAGTTAACAGAGGCAGTGCAAAA
AATAGCCCTGGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAGACTGCCCATCCAAAAAGAAACA
TGGGAGACATGGTGGACAGACTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTTAATACCCCTC
CCCTAGTAAAATTATGGTATCAGCTAGAGAAAGAACCCATAGCAGAAGCAGAAACTTTCTATGTAGATGG
AGCATCTAATAGAGAAACTAAAAAAGGAAAAGCGGGGTATGTTACTGACAGAGGAAGGCAGAAAATTATC
ACTCTAAGTGAAACAACAAATCAGAAGGCTGAATTACAGGCAATTCAGCTGGCTTTGCAAGATTCAGGAT
CTGAAGCAAACATAGTAACAGACTCACAGTATGCATTAGGAATCATTCAAGCACAACCAGATAAAAGTGA
ATCAGAGTTAGTCAACCAAATAATAGAACAATTAATAAGAAAGGATAGGGTCTACCTGTCATGGGTACCA
GCACACAAAGGTATTGGAGGAAATGAACAAGTAGATAAATTAGTAAGTAGTGGAATCAGGAAAGTACTGT
TTCTAGATGGAATAGACAAGGCTCAAGAAGAGCATGAAAAGTATCACAACAATTGGAGAGCAATGGCTAG
TGAATTTAATCTGCCACCCATAGTAGCAAAAGAAATAGTAGCTAGCTGTGACAAATGTCAGCTAAAAGGG
GAAGCCATGCATGGACAAGTAGACTGTAGTCCGGGGATATGGCAATTAGACTGTACACATTTAGAAGGAA
AAATCATCCTGGTAGCAGTCCATGTAGCCAGTGGCTACATAGAGGCAGAGGTTATTCCAGCAGAAACAGG
ACAGGAAACAGCATACTACATACTAAAATTAGCAGGAAGATGGCCAGTCAAAGTAATACATACAGACAAT
GGCAGTAATTTCACTAGTGCTGCAGTTAAGGCAGCCTGTTGGTGGGCAGGCATCCAACAGGAATTTGGGA
TCCCCTACAATCCCCAAAGTCAGGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATCATAGGACA
GGTAAGAGATCAAGCTGAGCACCTTAAGACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGA
AAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACTTACAAACTA
AAGAACTACAAAAACAAATTATAAAAATTCAAAATTTTCGGGTTTATTACAGAGACAGCAGAGACCCTAT
TTGGAAAGGACCAGCCAAACTACTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAACAGTGACATA
AAGGTAGTACCAAGGAGGAAAGCAAAAATCATTAGAGACTATGGAAAACAGATGGCAGGTGCTGATTGTG
TGGCAGGTAGACAGGATGAGGATTAGAACATGGAATAGTTTAGTAAAACATCATATGTATATTTCAAAGA
GAGCTAGTAGATGGGTCTACAGACATCATTATGAAAGTAGAAATCCAAGAATAAGTTCAGAAGTACACAT
ACCATTAGGGGAGGCTAGATTGGTAATAAAAACATATTGGGGTTTGCATACAGGAGAAAGGGATTGGCAA
TTGGGTCATGGAGTCTCCATAGAATGGAGATTGAGAAGATATAGCACACAAGTAGACCCTGGCCTGGCAG
ACCAGCTAATTCATATGCATTATTTTGATTGTTTTGCAGACTCTGCCATAAGAAAAGCCATATTAGGACA
AGTAGTTAGTCCTAGGTGTGATTATCAAGCAGGACATAATAAGGTAGGATCTCTACAATACTTGGCACTG
ACAGCTTTGATAAAGCCAAAAAGGAGAAAGCCACCCCTGCCTAGTGTTAGAAAATTAGTAGAGGATCGAT
GGAACAACCCCCAGAAGATCAGGGACCGCAGAGGGAACCATACAATGAATGGGCATTAGAGATTTTAGAG
GAACTCAAGCAGGAAGCTGTCAGACACTTTCCTAGACCATGGCTCCATAATTTAGGACAGTATATCTATG
CAACCTATGGGGATACCTGGACAGGAGTCGAAGCCCTACTAAGAATACTGCAACAACTACTGTTTATTCA
TTTCAGAATTGGGTGCCAGCATAGCAGAATAGGAATCTTGCGACAGAGAAGAGCAAGAAATGGAGCCAGT
AGATCCTAACTTAGAGCCCTGGAACCATCCAGGAAGCCAGCCTAGAACTCCTTGTAATAACTGCTATTGT
AAATACTGTAGCTACCATTGTCTAGTTTGCTTTCAGGCAAAAGGCTTAGGCATTTCATATGGCAGGAAGA
AGCGGAGACAGCGACGAAGCACTCCTCCAAGCAGTGAGGATCATCAAGATCCTATATCAAAGCAGTAAGT
ATATGTAATGTCTTTTTTATATGCAAGTGTAGATTATAGATTAGGAGTAGGGGCACTGATAATAGCATTA
ATCCTAGCAATAGTTGTGTGGATCATAGTATATATAGAATATAGGAAATTGCTAAGACAAAGAAAAATAA
ACAAGTTAATTGACAGGATTAGAGACAGAGAAGAAGACAGTGGCAATGAGAGTGAGGGGGATATTGAGGA
ATTGGCCACAATGGTGGATATGGGGCATCTTAGGCTTTTGGATGATAATAATTTGTAGGGGGGAGGAGAA
CTCGTGGGTCACAGTTTATTATGGGGTACCTGTGTGGACAGAAGCAAAAACTACTCTATTCTGTGCATCA
GATGCTAAAGCATATGAGAAAGAGGTACATAATGTTTGGGCTACACATGCCTGTGTACCCACAGACCCCA
GCCCACAAGAACTAGTTTTGGAAAATGTAACAGAAAGTTTTAACATGTGGGAAAATGACATGGTGGATCA
GATGCATGAGGATATAATCGGTTTATGGGATGAAAGCCTAAAGCCATGTGTAAAATTGACCCCACTCTGT
GTCACTTTAAATTGCAATACTACTAGCCACAATAATAGCAGCCCCAGCCCCATGACAAATTGCTCTTTCA
ATGCAACCACAGAATTAAGAGATAAGACACAGAAAGTGAATGCACTTTTTTATAGATCGGATATAGTACC
ACTTGAGAAGAATAGCTCTGAGTATATATTAATAAATTGCAATACCTCAACCATAACACAAGCCTGTCCA
AAGGTTTCTTTTGATCCGATTCCTATACATTATTGTGCTCCAGCTGGTTATGCGATTTTAAAGTGTAATA
ATAAGACATTCAATGGAACAGGACCATGCAGTAATGTCAGCACAGTACAATGTACCCATGGAATTAAGCC
AGTGGTATCAACTCAACTACTGTTAAATGGTAGCCTAGCAGAAGGGGAGATAATAATTAGATCTGAAAAT
CTGACAGACAATGCCAAAACAATAATAGTACATCTTAATAAATCTGTAGCAATTGTGTGTACAAGACCCA
ACAATAATACAAGGAAAAGTATAAGGATAGGACCAGGACAAGTATTCTATACAAATGAAATAATAGGAAA
CATAAGACAAGCACATTGTAACATTAGTAGAGAGCTATGGAACAATACTTTAGAACAGGTAAAGAAGAAA
TTGAAAGAACACTTTCAGAATAAAACAATAGAATTTCAACCACCCGCAGGAGGGGATCTAGAAGTTACAA
CACATAGTTTTAATTGTAGAGGAGAATTTTTCTATTGCAATACATCAAATCTGTTTAATATAACTGCAAG
TAATGCAAGTGATGCAAACAACAACACCATCACACTCCCATGCAAAATAAAACAAATTATAAACATGTGG
CAGGAGGTAGGACGAGCAATGTATGCCCCTCCCATTGCAGGAAACATAACATGTAACTCAAGTATCACAG
GACTACTATTGACACGTGATGGAGGCAATAACAATGACACAGGCAATAACAATGACACAGAGATATTCAG
ACCTGGAGGAGGAAATATGAAGGACAATTGGAGAAGTGAGTTATATAAATATAAAGTGGTAGAAATTAAG
CCATTAGGAATAGCACCCACTAAGGCAAAAAGGAGAGTGGTGGAGAGAGAGAAAAGAGCAGTGGGACTAG
GAGCTGTACTCCTTGGGTTCTTAGGAACAGCAGGAAGCACTATGGGCGCGGCGTCAATAACGCTGACGGT
ACAGGCCAGGCAACTGTTGTCTGGTATAGTGCAACAGCAAAGCAATTTGCTGAGGGCTATAGAGGCGCAA
CAGCACATGTTGCAACTCACGGTCTGGGGCATTAAGCAGCTCCAGGCAAGAGTCCTGGCTATAGAAAGAT
ACCTAAAGGATCAACAGCTCCTAGGGCTTTGGGGCTGCTCTGGAAAACTCATCTGCACCACTGCTGTGCA
TTGGAACTCCAGTTGGAGTAATAAATCTCAAGACTATATTTGGGGTAACATGACATGGATGCAGTGGGAT
AGAGAAATTAATAATTACACAGACATAATATACACATTGCTTGAAGAATCGCAAAGCCAGCAGGAGAAAA
ATGAAAAAGATTTATTAGCATTGGACAGTTGGAACAATTTGTGGAATTGGTTTAGCATAACAAAGTGGCT
GTGGTATATAAAAATATTCATCATGATAGTAGGAGGCCTGATAGGTTTAAGAATAATTTTGGGTGTGCTC
TCTATAGTGAAAAGAGTTAGGCAGGGATACTCACCTTTGTCGTTTCAGACCCTCCCCCCAAACCCGAGGG
GACCCGACAGGCTCAGAGGAATCGAAGAAGAAGGTGGAGAGCAAGACAAAGACAGATCCATTCGGTTAGT
GAGCGGATTCTTAGCACTTGTCTGGGAAGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGATTGAGA
GACTTCATATTGATTGCAGGGAGAGCAGCGGAACTTCTGGGACGCAGCAGTCTCAGGGGACTACAGACAG
GGTGGCAAGCCCTTAAGTATCTGGGAAGCCTTGTGCAGTATTGGGGTCTGGAACTAAAAAAGAGTGCTAT
AAATCTATTTGATACCACAGCAATAGTAGTAGCTGAAGGAACAGATAGGCTTATTGAAGGCTTACAAGGA
ATTGGTAGAGCTATCTACAACATACCCAGAAGAATAAGGCAGGGCTTTGAAGCAGCTTTGCTATAAAATG
GGGGGCAAGTGGTCAAAAAGCAGCATAGTTGGATGGCCTGCTATAAGAGAAAGAATCAGACGAACTGAGC
CAGCAGCAGAGGGAGTAGGAGCAGCATCTCAAGACTTAGATAAACATGGAGCACTAACAAGCAGCAACAC
ACCCCAGAATAATGCTGCTTGTGCCTGGCTGCAAGCACAAGAGGAGGAAGACGAAGTAGGCTTTCCAGTC
AGGCCTCAGGTGCTTTTGAGACCAATGACATATAAGGGAGCATTCGATCTTAGCTTCTTTTTAAAAGAAA
AGGGGGGACTGGAAGGGTTAATTTGGTCTAAGAAAAGGCAAGAAATCCTTGATTTGTGGGTCTATAACAC
ACAAGGCTACTTCCCTGATTGGCAAAACTACACACCGGGACCAGGGGTCAGGCTTCCACTGACCTTTGGA
TGGTGCTTTAAGCTAGTGCCAGTTGACCCAAGGGAAGTAGAAGAGGAGAACAAAGGAGAAAACAACTGTT
TGCTACACCCTATGAGCCAACATGGAATGGAGGATGAACACAGAGAAGTATTAAAGTGGGTGTTTGACAG
CAGCCTAGCACGCAGACATCTGGCCCGTGAGAAACATCCGGAGTATTACAAAGACTGCTGACACAGAAGG
GACTTTCCGCCTGGGACTTTCCACTGGGGCGTTCCAGGAGGAGGGGTCTGGGCGGGACTAGGGAGTGGCC
AACCCTCAGATGCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTAGGTAGACCAGATCTG
AGCCTGGGAGCTCTCTGGCTACTTGGGGAACCCACTGCTTAAGCCTCAATA
>U88824.1 HIV-1 isolate 94UG114 from Uganda complete genome
CTGAAAGCGAAAGTAGAACCAGAGGAGATCTCTCGACGCAGGACTCGGCTTGCTGAAGCGCGCACGGCAA
GAGGCGAGGGGCAGCGGAAGGTGAGTACGCTAAAAAATTTTTGACTAGCGGAGGCTAGAAGGAGAGAGAT
GGGTGCGAGAGCGTCAGTATTAAGCGGAGGAAAATTAGATGAATGGGAAAAAATTCGGTTACGGCCAGGG
GGAAAGAAAAAATATAGACTAAAACATCTAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCACTTAATC
CTGGCCTTTTAGAAACATCAGAAGGCTGTAGACAAATAATAAGACAGCTACAACCATCTATTCAGACAGG
ATCAGAGGAAATTAAATCATTATATAATACAGTGGTAACCCTCTATTGTGTACATGAGAGGATAAAGGTA
GCAAGCACCAAGGAAGCTTTAGACAAGATAGAGGAAGAACAAGCCAAAAGTAAGAAAAAAGCACAGCAAG
CAACAGCTGACACAAGAAACAGCAGCCAGGTCAGCCAAAATTATCCTATAGTGCAAAACCTACAGGGGCA
AATGGTACACCATCCCCTATCACCTAGAACTTTGAACGCATGGGTAAAAGTAATAGAGGAGAAGGCTTTC
AACCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAATACCATGC
TAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAGGATACCATCAATGAGGAAGCTGCAGA
ATGGGATAGGCTACATCCAGTGCATGCAGGGCCTGTTGCACCAGGCCAATTGAGAGAACCAAGGGGAAGT
GATATAGCAGGAACTACTAGTAACCTTCAGGAACAAATAGGATGGATGACAAGCAATCCACCTATCCCAG
TAGGAGAAATCTATAAAAGATGGATAATCCTAGGATTAAATAAAATAGTAAGAATGTATAGCCCTGTCAG
CATTTTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGATCGGTTCTATAAAACTCTA
AGAGCCGAGCAAGCTTCACAGGATGTAAAAAATTGGATGACTGAAACCTTGTTGGTCCAAAATGCGAACC
CAGATTGTAAAACTATCTTAAAAGCATTGGGACCAGCGGCTACATTAGAAGAAATGATGACAGCATGTCA
GGGAGTGGGGGGACCCAGTCATAAAGCAAGAGTTTTGGCTGAGGCAATGAGCCAAGCAACAAATGCAAAT
ACTGCTATAATGATGCAGAGAGGCAATTTTAAGGGCCCAAAGAAAATCATTAAGTGTTTCAACTGTGGCA
AAGAAGGGCACACGGCAAAAAATTGCAGGGCTCCTAGAAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGG
ACACCAAATGAAAGATTGCACTGAAAGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCCACAATGGA
AGGCCAGGGAATTTCCTTCAGAGCAGACCCCCAGCAGAGCCAACAGCCCCACCAGCAGAGATCTTCGGAT
TAGGGGAGGAGATAACACCTCCTCAGAAACAGGAGCAGAAAGACAAGGAACTGTATCCTTTAACCTCCCT
CAAATCACTCTTTGGCAACGACCCGTTGTCACAGTAAAGATAGGGGGACAGCTAAAGGAAGCTCTATTAG
ATACAGGAGCAGATGATACAGTATTAGAAGAAATAAATTTGCCAGGAAAATGGAAACCAAAAATGATAGG
GGGAATTGGGGGCTTTATCAAAGTAAGACAGTATGATCAAATACCCTTAGAAATCTGTGGACATAAAGCT
ATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATTTGTTGACTCAGATTGGTT
GCACTTTAAATTTTCCAATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGGATGGATGGCCC
AAAAGTTAAACAATGGCCGTTGACAGAAGAAAAAATAAAAGCACTAATAGAAATTTGTTCAGAACTAGAA
AAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAACCCATACAATACTCCAATATTTGCCATAAAGAAAA
AAGACAGTACTAAGTGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTTTGGGA
AGTTCAACTAGGAATACCACATCCTGCAGGGCTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGT
GACGCATATTTTTCAGTTCCCTTACATGAAGACTTTAGAAAATATACCGCATTCACCATACCTAGTACAA
ACAATGAGACACCAGGAATTAGATATCAGTACAATGTGCTTCCACAAGGATGGAAAGGATCACCAGCAAT
ATTCCAAAGTAGCATGACAAAAATCTTAGAACCTTTTAGAAAACAAAATCCAGAAATGATTATCTATCAA
TACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAATAAAAATAGAGGAATTAA
GGGGACACCTCTTGAAGTGGGGATTTACCACACCAGACAAAAAGTATCAGAAAGAACCCCCATTTCTTTG
GATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATACATCTGCCAGAAAAGGAAAGCTGG
ACTGTCAATGATATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGCCAGATTTATCCAGGAATTAAAG
TAAGACAATTATGCAAATGCCTTAGGGGAGCCAAAGCACTGACAGAAGTAATACCACTGACAGCAGAAGC
AGAATTAGAACTGGCAGAAAACAGGGAAATACTAAAAGAACCAGTACATGGAGCGTATTATGACCCATCA
AAAGACTTAATAGCAGAAATACAGAAACAAGGGCAAGATCAATGGACATATCAAATATATCAAGAACAAT
ATAAAAATCTGAAAACAGGAAAGTATGCGAAAATGAGGGGTACCCACACTAATGATGTAAAACAATTAAC
AGAGGCAGTGCAGAAAATAGCCCAAGAATGTATAGTAATATGGGGAAAGACTCCTAAATTTAGACTACCC
ATACAAAAGGAAACATGGGAAACATGGTGGACAGAGTATTGGCAGGCCACCTGGATTCCTGAGTGGGAGT
ATGTCAACACCCCTCCTTTAGTTAAATTATGGTATCAGTTAGAGAAGGAACCCATAGTAGGAGCAGAAAC
TTTCTATGTAGATGGGGCAGCTAATAGAGAGACTAAAATAGGAAAAGCAGGATATGTTACTGACAGAGGA
AGACAGAAAGTTGTCTCTCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCCATTAATCTAGCTT
TGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACA
ACCAGATAAGAGTGAATCAGAGGTAGTCAGTCAAATAATAGAGCAGTTAATAAAAAAGGAAAAGGTCTAC
CTGTCATGGGTACCAGCACACAAGGGGATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTAATGGAA
TCAGAAAAATACTATTTTTGGATGGAATAGATAAGGCTCAAGAAGAACATGAGAAATACCACAACAATTG
GAGGGCAATGGCTAGTGAGTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAA
TGTCAGGTGAAAGGAGAAGCCTTGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAATTAGATTGTA
CACATTTAGAAGGAAAAGGTATCCTGGTAGCAGTCCATGTAGCCAGTGGTTATATAGAAGCAGAAGTTAT
TCCAGCAGAAACAGGGCAGGAAACAGCCTACTTTCTTTTGAAATTAGCAGGAAGATGGCCAGTAAAAGTA
GTACATACAGATAATGGCAGCAATTTCACCAGCGCTGCAGTAAAGGCCGCCTGTTGGTGGGCAGGTATCA
AGCAGGAATTTGGAATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAA
GAAAATTATCGGGCAGGTAAGAGAACAAGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATC
CACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGATATCATAGCAA
CAGACATACAAACTAAGGAATTACAAAAACAAATCATAAAAATTCAAAATTTTCGGGTTTATTACAGGGA
CAGCAGAGATCCAGTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAA
GACAATAGTGAAATAAAGGTAGTACCAAGAAGAAAAGCAAAGATTATTAGGGATTATGGAAAACAGATGG
CAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAACACCATA
TGTATATTTCAAAGAAAGCTAAAGGATGGTTGTATAGACATCACTATGACTGCCCAAATCCAAAAATAAG
TTCAGAAGTACACATCCCATTAGGAGAAGCTAGGCTGGTAGTAAAAACATATTGGGGTCTGCATACAGGA
GAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAGGGAGATATAACACACAAATAG
ACCCTGGCCTAGCAGACCAACTAATTCATATATATCATTTTGATTGTTTTGCAGAATCTGCTATAAGAAA
AGCCATATTAGGACAAGTAGTTTATCCTAGGTGTAATTATCAAGCAGGACATAACAAGGTAGGATCTTTA
CAATACTTGGCACTAACAGCATTAGTAACACCAAGGAAGATAAAACCACCTTTGCCTAGCGTTGGGAAGC
TGACAGAAGACAGATGGAACAAGCCCCAGAGAACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACA
TTAGAGCTTTTAGAGGAGCTTAAGAGTGAAGCTGTTAGACACTTTCCTGGGCCATGGCTTCATAGCCTAG
GACAATATATCTATGAAACTTATGGGGATACCTGGACAGGAGTTGAAGCTATAATCAGAATCCTTCAACA
ACTACTGTTTATCCATTTCAGAATTGGGTGTCGACATAGCAGAATAGGCATTAATCGACAGAGAAGAATA
AGAAATGGAGCCAGTAGATCCCAATCTAGAGCCCTGGAACCATCCAGGAAGTCAGCCTAGGACTCCTTGT
AACAAATGCTATTGTAAAAGGTGTTGCTATCATTGTTACGTGTGCTTCGTAACGAAAGGCTTAGGCATCT
CCTATGGCAGGAAGAAGCGGAGACCGCGACGAAGAACTCCTCCAGGCGGTCAGGCTAATCAAGATCCTGT
ACCAAAGCAGTAAGTAGTACATGTAATGCAACCTTTAGAGATATTAGCAATAGTAGCATTAGTAGTAGCA
CTAATACTAGCAATAGTTGTGTGGACTATAGTATTCATAGAGTGTAAAAAATTAAGAAGGCAAAGAAAAA
TAGACTGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGATAGTGGCAATGAGAGTGAGGGAGACAAAGA
GGAATTATCAGCACTTGTGGAAATGGGGCACGATGCTCCTTGGGATGCTGATGATATGTAGTGTTACAGG
AAAGTCGTGGGTCACAGTTTATTATGGGGTGCCTGTGTGGAAAGAAGCAACCACTACTCTATTTTGTGCA
TCAGATGCTAAGGCATATAAAGCAGAGGCACATAACATCTGGGCTACACATGCCTGTGTACCAACAGACC
CCAACCCACAAGAAATAAAACTAGAAAATGTCACAGAAAACTTTAATATGTGGAAAAATAACATGGTGGA
GCAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGTCTAAAACCATGTGTAAAGTTAACCCCACTC
TGTGTCACTTTAAACTGCACTAACTGGGTCACTGATACCACCAATACCACAGGAATGGCAAACTGCTCTT
TCAATATAACCACAGAAATAAGAGATAAGAAGAAGCAAGTACAGGCACTTTTTTATAAACTTGATGTGGT
AAAAATAAATGATAATGATAGTGATAACACCAGCTATAGACTAATAAATTGTAATACCTCAGCCATTACA
CAGGCGTGTCCAAAGATGACCTTTGAGCCAATTCCCATACATTATTGTGCCCCAGCTGGATTTGCAATTC
TAAAATGTAACGAAAAGAAGTTCAATGGAACAGGTCCATGCAAAAATGTCAGCACAGTACAGTGTACACA
TGGGATTAAGCCAGTAGTGTCAACTCAACTGTTGTTGAATGGCAGTCTAGCAGAAGAAGAAATAATAATT
AGATCTGAAAATCTCACAAACAATGCTAAAATCATAATAGTACAGCTTAATGAGTCTGTACCAATTAATT
GCATAAGGCCCTATAACAATACAAGACAAAGTACACGTATAGGACCAGGGCAAGCACTCTTTACAACAAA
AGTAATAGGAGATATAAGACAAGCACATTGTAACATTAGTGGAGCAGGATGGAATAAAACTTTACAACAG
GTAGCTGAAAAATTAGGAAACCTTCTTAACCAGACAACAATAATTTTTAAACCATCCTCGGGAGGGGACC
CAGAAATTACAACACACAGCTTTAATTGTGGAGGGGAATTTTTCTACTGCAATACAACAAGACTGTTTAA
TAGTACATGGAAAAGGAATAATAGTGAATGGAGGAGTGATAATACACCAGATGAGACAATCACACTCCAA
TGCAGAATAAAACAAATTATAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTGAAG
GATTCATCAACTGTTCATCAAATATTACAGGACTATTGTTGACAAGAGATGGTGGTGCAATTAATAGTAG
CCAGAATGAGACCTTCAGACCTGGAGGAGGAGATATGAGAAACAATTGGAGAAGTGAATTATACAAATAT
AAAGTAGTAAAACTTGAACCAATAGGTCTAGCGCCCACCGCGGCAAAGAGAAGAGTGGTAGAAAGAGAAA
AAAGAGCAATAGGACTGGGAGCTCTGTTCCTTGGGTTCTTGGGAACAGCAGGAAGCACGATGGGCGCAGT
GTCACTGACGCTGACGGTACAGGCCAGACAGGTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTG
AGGGCTATAGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATTAAACAGCTCCAGGCAAGAA
TCCTGGCTGTGGAAAGCTACCTAAAGGATCAACAGCTCCTAGGAATTTGGGGTTGCTCTGGAAAACACAT
TTGCACCACTAATGTGCCCTGGAACTCTAGCTGGAGTAATAGATCTGTAGATGAAATTTGGAATAACATG
ACCTGGATGGAGTGGGAAAGAGAAATTGACAATTATACAGAGTTAGTATACAGCTTACTTGAAGTATCGC
AAATCCAGCAAGAGAAAAATGAACAAGAACTATTGAAATTGGACACATGGGCAAGTTTGTGGAATTGGTT
TAGCATAACACAATGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTGATAGGTTTAAGA
ATAGTTTTTGCTGTGCTTTCTGTAGTAAATAGAGTTAGGCAGGGATACTCACCTCTGTCATTTCAGACCC
TCCTCCCAGCCCCGAGGGAACCCGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGCGAGACAGAGG
CAGATCCATTCGATTGGTGAACGGATTATCAGCACTTATCTGGGACGATTTGAGGAACCTGTGCCTCTTC
AGTTACCACCGCTTGAGAGACTTAATCTTAATTGCAGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGT
GGGAAGCCATCAAATATCTGTGGAATCTCCTGCAGTATTGGATTCAGGAACTAAAGAATAGTGCTGTTAG
CCTGTTTAATACCATAGCAATAGCAGTAGCTGAGGGGACAGATAGGGCTATAGAACTAGTGCAAAGAGCT
GTTAGAGCTATTCTTAACATACCTGTACGGATAAGACAGGGCTTGGAAAGGGCTTTACTATAAAATGGGT
GGCAAGTGGTCAAAAAGTAGTATAGTTGGGTGGCCTGCTGTAAGAGAAAGAATGAGAAGAACTGAGCCAG
CAGCAGAAGGGGTGGGAGCAGCATCCCGGGACCTGGAAAAACATGGGGCAATCACAAGCAGCAATACAGC
ACAGACTAATGATGCCTGTGCCTGGCTAGAAGCACAGGAAGAGGAGGAAGTGGGATTTCCAGTCAGACCT
CAGGTACCATTAAGACCAATGACTTACAAGGAAGCGGTAGACCTAAGCCACTTTTTAAAAGAAAAGGGGG
GACTGGAAGGGTTAGTTTGGTCCCCGAAAAGACAAGAGATCCTTGATCTTTGGGTCTACCACACACAAGG
CTTCTTCCCTGATTGGCAAAATTACACACCAGGGCCAGGGATTAGATATCCACTGACCTTTGGATGGTGC
TTCGAGTTAGTACCAATGGAGCCAAAGGAGGTAGAAGAGAACACTGAAGGAGAGGACAACTGCTTGTTAC
ACCCGATAAACCAGCATGGAATGGAGGACCCGGAGAGAGAAGTTTTAGTGTGGAGATTTAACAGCAGACT
AGCATTTGAACACAAGGCCAAAATGAAACATCCGGAGTACTACAAAGACTGCTGACACCGAGCTTTCTAC
AAGGGACTTTCCGCTGGGGACTTTCCAGGGAGGCGTAACAGGGGCGGGACTGGGAGTGGCTAACCCTCAG
ATGCTGCATATAAGCAGCTGCTTTCTGCCTGTACTGGGTCTCTCTTGTTAGACCAGATACGAGCCTGGGA
GCTCTCTGGCTAGCAAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTTC
>AY253311.1 HIV-1 isolate 01TZA280 from Tanzania truncated gag protein (gag) gene, partial cds; nonfunctional pol protein (pol) gene, partial sequence; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds
GCGAGAGCGTCAGTATTAAGCGGGGGACAATTAGATGCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAA
AGAAAAAATATCAACTAAAACATATAGTATGGGCAAGCAGGGAGTTAGAACGATTTGCACTTAATCCTGG
CCTTTTAGAGACATCCGAAGGCTGTAAACAAATCTACAACCAGCTATTCAGACAGGATCAGAAGAACTTA
AATCATTATTTAATACAGTAGCAACCCTCTATTGTGTGCATAGAAAGATAGAGGTAAAAGACACCAAGGA
AGCTTTAGAAAAATTAGAGGAAGAGCAAACCAAAAGTAAGAAAAAGGCACAGCAAGCAACAGCTGACACA
GGAAGCAGCAGCCAGGTCAGCCAAAATTATCCTATAGTGCAAAACCTACAGGGGCAAATGGTACACCAGG
CCATATCACCTAGAACCTTGAACGCATGGGTAAAAGTAATAGAAGAGAAGGCTTTCAGCCCAGAAGTGAT
ACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACAATGCTAAACACAGTGGGG
GGACATCAAGCAGCTATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGGCTAC
ATCCAGTGCATGCAGGGCCTATTGCACCAGGACAGATGAGAGAACCAAGGGGAAGTGATATAGCAGGAAC
TACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAATCCACCTGTCCCAGTAGGAGAAATATAT
AAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTGTTAGCATTTTGGACATAA
GACAAGGACCAAAGGAGCCCTTTAGGGACTATGTAGATCGGTTCTATAAAACTCTAAGAGCCGAGCAAGC
TTCACAAGATGTAAAAAATTGGATGACTGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAAACT
ATCTTAAAAGCATTGGGACCAGCGGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGGGGAC
CCAGTCATAAGGCAAGAGTTCTAGCTGAGGCAATGAGCCAAGCAACAAATGTAAATGCTGCCATAATGAT
GCAGAGAGGTAATTTTAAGGGCCCAAGGAAAATCATTAAGTGTTTCAACTGTGGCAAAGAAGGACACATA
GCAAAAAATTGCAGGGCCCCAAGAAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAG
ATTGCACTGAAAGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCCACAAAGGAAGGCCAGGGAACTT
CCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCAGAGATCTTCGGGTTTGGGGAGGAGATAAAACCC
TCTCAGAAACAGGAGCAGAAAGACAAGGACAAGGAACTGTATCCTTCAGCTTCCCTCAAATCACTCTTTG
GCAACGACCCCTTGTCACAATAAAAATAGGGGGACAGCTAAAGGAAGCTCTATTAGATACAGGAGCAGAT
GATACAGTATTAGAAGAAATGAGCTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTT
TTATCAAAGTAAGACAGTATGATCAAATACTCATAGAAATCTGTGGACAAAAAGCTATAGGTACAGTGTT
AGTAGGACCTACACCTGTCAACATAATTGGAAGAAACTTGTTGACTCAGATTGGCTGTACTTTAAACTTT
CCCATTAGTCCTATTGCCACTGTACCAGTAAAATTGAAGCCAGGGATGGATGGCCCAAAAGTTAAACAAT
GGCCGTTGACAGAAGAAAAAATAAAAGCACTAACAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAAT
TTCAAGAATTGGGCCTGAAAATCCATACAATACTCCAATATTTGCTATAAAGAAAAAAGACAGTACTAAG
TGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGATTTCTGGGAAGTTCAACTAGGAA
TACCGCATCCTGCAGGGCTAAAAAAGAAAAAATCAGTAACAGTATTGGATGTGGGTGATGCATACTTTTC
AGTTCCCTTAGATAAAGATTTTAGAAAGTATACTGCATTCACCATACCTAGCACAAACAATGAGACACCA
GGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTTCAAAGTAGCA
TGACAAAAATCTTAGAACCCTTTAGAAAACAAAATCCAGAAATAGTTATCTATCAATACATGGATGATTT
GTATGTAGGATCTGACTTAGAGATAGGACAGCATAGAACAAAAATAGAGGAATTAAGGGACCACTTATTG
AAGTGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTTCTTTGGATGGGTTATGAAC
TCCATCCTGATAAGTGGACAGTGCAGCCTATAAAACTGCCAGAAAAGGAAAGCTGGACTGTCAATGATAT
ACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTATTCAGGAATTAAAGTAAAACAATTATGT
AAACTCCTTAGGGGAGCCAAAGCACTGACAGAAGTAATACCACTGACAAAAGAGGCAGAATTAGAACTGG
CAGAAAATAGGGAGATTCTAAGAGAAACAGTACATGGAGCATATTATGACCCATCAAAAGACTTAATAGC
AGAAATACAGAAACAAGAGCAAGGCCAATGGACATATCAAATTTATCAAGAACCATTTAAAAATCTGAAA
ACAGGAAAGTATGCAAAAATGAGGGGTACCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAA
AAATAGCCCTAGAAGGTATAGTGATATGGGGAAAGATTCCTAAATTTAGACTGCCCATACAAAAGGAAAC
ATGGGAAACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCT
CCTTTAGTTAAATTATGGTACCAGTTAGAGAAGGAACCCATAATAGGAGCAGAAACTTTCTATGTAGATG
GGGCGGCTAATAGAGAGACTAGATTAGGAAAAGCAGGATATGTTACTGACAAAGGAAGACAGAAAGTTGT
CTCTCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCCATAAACCTAGCTTTGCAGGATTCGGGA
CTAGAAGTAAACATAATAACAGACTCACAATATGCATTAGGGATCATTCAAGCACAACCAGATAAAAGTG
AATCAGAGTTAGTCAGTCAAATAATAGAACAGTTAATAAAGAAGGAAAAGGTTTACCTAGCATGGGTACC
GGCACACAAGGGGATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTAGTGGAATCAGAAAAGTATTA
TTCTTGGATGGAATAGATAAGGCACAGGAAGATCATGAAAGATATCACAGCAACTGGAGAGCAATGGCTA
GTGATTTTAACCTGCCATCTGTGGTAGCAAAAGAAATAGTAGCCTGCTGTGATAAATGTCAGCTAAAAGG
AGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAATTGGATTGCACACATTTAGAAGGA
AAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGCTATATAGAAGCAGAAGTTATTCCAGCAGAAACAG
GGCAGGAAACAGCCTACTTTATCTTAAAATTAGCAGGAAGATGGCCAGTAAAAGTAATACATACAGACAA
TGGCTCCAATTTCACCAGTGCTACTGTTAAAGCTGCCTGTTGGTGGGCAGGCATCAAGCAGGAATTTGGA
ATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAGAGAGTTAAAGAAAATTATAGGAC
AGGTAAGAGATCAAGCTGAACACCTTAAGACAGCAGTACAAATGGCAGTATTTATCCACAATTTTAAAAG
AAAAGGGGGGATTGGGGGGTACAGTGCAGGAGAAAGAATAATAGACATAATAGCATCAGACTTACAAACT
ACAGAATTACAAAAACAAATCACAAAAATTCAAAACTTTCGGGTTTATTACAGGGACAGCAGAGACCCAA
TTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGACCATAGTGACAT
AAAGGTAGTACCAAGAAGAAAAGCAAAGATCATTAGAGATTATGGAAAACAGGTGGCAGGTGATGATTGT
GTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAACACCATATGTATGTTTCAAGG
AAAGCGCAAGGATGGTTGTATAGACATCACTATGACAGCCATCACCCAAAAATAAGTTCAGAAGTACACA
TTCCACTAGGAGATGCTAGACTGGTGGTAACAACATATTGGGGTCTGCATACAGGAGAAAGAGAATGGCA
TCTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAGATATAGCACACAAGTAGACCCTGGACTGGCA
GACCAACTAATTCATATGTATTATTTTGATTGTTTTACAGACTCTGCCATAAGGAAAGCAATATTAGGTC
ATATAGTGAGTCCTAGGTGTGATTATCAAGCAGGACATAACAAGGTAGGATCTTTACAGTATTTGGCACT
AATAGCATTAATAAAACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTTAAGAAGCTAACAGAGGATAGA
TGGAACAAGCCCCAGAGGACCAAGGGCCACAGAGGGAGCCCTACAATGAATGGACATTAGAGCTTTTAGA
GGAGCTTAAGAGTGAAGCTGTTCGACACTTTCCTAGGTTGTGGCTCCATAACTTAGGACAATTTATCTAT
GAAACTTATGGAGATACATGGGCAGGAGTTGAAGCTATAATAAGAATCCTACAACAACTACTGTTTATTC
ATTTCAGAATTGGGTGTCAACATAGCAGAATAGGCATTACTCTACAGAGAAGAACAAGAAATGGATCCAG
TAGACCCTAACCTAGAGCCCTGGAATCATCCAGGAAGTCAGCCTAGGACTCCTTGTAACAATTGTTATTG
TAAAAAGTGTTGCTATCATTGTCAAAATTGCTTCATAACGAAAGGCTTAGGCATCTCCTATGGCAGGAAG
AAGCGGAGACAGCGACGAAGAACTCCTCAGGGCGATCAGGCTCATCAAGATCCTATACCAAAGCAGTAAG
TAGTACATGTAATGACACCTTTAGAGATAACAGCAATAGCAGCATTAGTAATAGCTTCAATACTAGCAAT
AGTGGTGTGGACTATAGTATACATAGAGTATAGGAGAATAAAAAAGCAAAAGAAAATAGACTGGTTAATT
GATAGAATAAGAGAAAGAGCAGAAGATAGTGGCAATGAGAGTGATGGAGACACAGAGGAATTATCAACAC
TTGTGGAGATGGGGCATCATGCTCCTTGGAATGTGGATGACATATAGTGTTGCAGAACAGTTGTGGGTCA
CAATTTATTATGGGGTACCTGTTTGGAGAGAAGCAAACACCACTCTATTTTGTGCATCAGATGCTAAATC
ATTTGACACAGAGGCACATAATATCTGGGCTACACATGCCTGCGTACCAACAGACCCCAACCCACAAGAA
ATGGATCTGGTAAATGTTTCAGAAAACTTTAACATGTGGAAAAATAACATGGTGGAACAGATGCATGAGG
ATATAATCAGCTTATGGGAGGAAAGCCTAAAACCATGTGTAAAATTAACCCCACTCTGTGTCACTTTACA
CTGCTCTGACGCGAACACGACTAACAGTGGGAATGGGACTAACACGACTGATCCTCGCCTTATTGAAAAA
GGAGAGATGAAAAACTGCTCTTTCAATATAACCACAGAAATAAGAGATAAGAGAAAGCAAGTACAAGCAC
TTTTTTATAAACTTGATGTGGTACCAATAGATAAAAAGAATAATAATAGTTATACATTAATGCATTGCAA
TACCTCAGCCATTAAACAAGCTTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCA
GCTGGTTTTGCAATTCTAAAGTGTAAAGATAAGAAGTTCAATGGAACAGGCCCATGCAAAAAAGTCAGTA
CAGTACAATGTACACATGGAATTAGGCCAGTGGTGTCAACTCAACTGCTGTTGAATGGCAGTTTAGCAGG
AGAAGAGATAATAATTAGATCTGAAAATCTCACAAACAATGTTAAAACCATAATAGTACAGTTAAATGAG
ACTGTAAAAATTAATTGTACAAGGCCTAATAACAATACAAGAAAAGGTATACGTATAGGACCAGGGCAAA
CATTCTTTACAGCAGAGGTAACAGGAGATATAAGAAAAGCATATTGTAACATTAGTGGAGCAGAATGGGA
TAAAACTTTACAACAAGTAGCTACAAAACTAGGAGACCTTCTTAACAAGACAATAATAAATTTTAGTCCA
TCCTCAGGAGGGGACCCAGAAATTACAACACATAGCTTTAATTGTGGAGGGGAATTTTTCTACTGCAATA
CATCACTCCTGTTTAATACTACATGGATTAAGGGTACACAAAATAATACAGAGACAAATAATAGTACAAT
CACAATCCCATGCAGAATAAAACAAATTATAAACATGTGGCAGGGAGTAGGAAAAGCAATGTATGCCCCT
CCCATCGCAGGACTAATCAGATGTACATCAAATATTACAGGACTATTACTAACAAGAGATGGTGGTAATG
TAAATAATAGTAGAGAGGAGATCTTCAGACCTGGAGGAGGAGATATGAGAGACAATTGGAGAAGTGAATT
ATACAAATATAAAGTAGTAAGAATAGAACCAATAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTG
GAAAGAGAAAAAAGAGCAATAGGACTAGGAGCTATGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACGA
TGGGCGCAGCGTCATTGACGCTGACGGTACAGGCCAGACAGTTATTGTCTGGTATAGTGCAACAGCAAAA
CAATTTGCTGAGGGCTATAGAGGCGCAACAGCATTTGTTGCAACTCACAGTCTGGGGCATTAAACAGCTC
CAGGCAAGAGTCCTGGCTGTAGAAAGCTACCTAAAGGATCAACAGCTCCTAGGAATTTGGGGTTGCTCTG
GAAAACACATTTGCACCACTGCTGTGCCCTGGAACTCTAGTTGGAGTAATAAGTCCTTAGATGACATTTG
GAATAACATGACCTGGATGGAGTGGGAAAAAGAAATTGACAATTACACAGGAGTAATATACAGCTTAATT
GAAGAATCGCAAGTCCAGCAAGAAAAGAATGAAAAAGAACTATTGGAATTGGACAAATGGGCAAGTTTGT
GGAATTGGTTTAGCATAACAAAATGGCTGTGGTATATAAAATTATTCATAATGATAGTAGGAGGCTTGAT
AGGTTTAAAAATAGTTTTTACTGTGTTTTCTTTAGTAAATAGAGTTAGGCAGGGATATTCACCTCTGTCG
TTGCAGACCCTCCTCCCAGCCTCGAGGGGACCAGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGC
AAGGCAGAGGCAGATCGATTCGATTGGTGAACGGATTCTCAGCACTTATCTGGGACGATCTGCGGAACCT
GTGCCTCTTCAGCTACCGCCACTTGAGAGACTTAATCTTAATTGCCACACGGATTGTGGGACTTCTGGGA
CACAGGGGGTGGGAAGCCATCAAGTATCTGTGGAACCTCCTGCAATATTGGATTCAGGAACTGAAGAATA
GTGCTATTAGTTTGCTCAATGTCACAGCAATAGCAGTAGCTGAGGGGACAGATAGGATTATAGAAATAAT
ACAAAGAGCTTTTAGAGCTGTTCTTCACATACCCAGAAGAGTAAGACAGGGCTTGGAAAGGGCTTTACTA
TAAAATGGGTGGCAAATGGTCAAAAAGTAGTATAGTTGGATGGCCTGCTATAAGGGAAAGAATAAGAAAA
GCTGATCCAGCAGCAGACGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGGGCAATCACAAGTA
GTAATACAGCACACACTAATGCTGACTGTGCCTGGCTAGAAGCGCAAGAAGAGGCAGACGAAGTGGGTTT
TCCAGTCAGACCTCAGGCGCCATTAAGACCAATGACTTATAAGGCAGCTTTGGATTTGAGCCACTTTTTA
AAAGATAAGGGGGGACTGGAAGGGTTAGTTTGGTCTCAGAGAAGGCAAGACATCCTTGATCTTTGGGTCT
ACCACACACAAGGCTTCTTCCCTGATTGGCACAATTACACACCAGGGCCAGGGACTAGATATCCACTGAC
CTTTGGATGGTGCTTCGAGCTAGTACCAGTTGACCCAAAGGAGGTAGAAGAGACCACTGAAGGAGAGAAC
AGCTGCTTGTTACACCCTATAAGCCAGCATGGAATGGAGGACACGGAGAAAGAAGTGTTAGTATGGAGAT
TTAACAGCAGACTAGCATTTGAACACAAGGCCCGAAGCTTGCATCCGGAGTACTACAAAGACTGCTGACA
TCGAGACTGCTGACACCGAGTTTTGCTACAAGGGACTTTCCGCTGGGACTTTCCGGGGAGGCGTAACCTG
GGCGGGGCTGGGGAGTGGCCAACCCTCAGATGCTGCATATAAGCAGCTGCTTTCTGCCTGTACTGGGTCT
CTCTAGCTAGACCAGATTTGAGCCT
>AY331295.1 HIV-1 isolate 1058-11 from USA, partial genome
GCGTCAGTATTAAGCGGGGGAAAATTAGATACATGGGAGAAAATTCGGTTAAGGCCAGGGGGAAAGAAAA
AATATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCACTTAACCCTGGCCTGTT
AGAAACAGCAGAAGGCTGTAGACAATTATTGGGACAGCTACAGCCATCCCTTCAAACAGGATCAGAAGAA
CTTAAATCATTATTTAATACAATAGCAACCCTCTATTGTGTACATCAAAGGATAGAGGTAAGAGACACCA
AAGAGGCTTTAGACAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAAGCACAGCAAGCAGCAGCTGC
AGCTGACACAGGAAACAGCAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACCTCCAAGGGCAAATG
GTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAATAGAAGAGAAGGCTTTTAGCC
CAGAAGTAATACCCATGTTTGCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAA
CACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGG
GATAGAATACATCCAGCGCAAGCAGGGCCTATAGCACCAGGCCAGATAAGAGACCCAAGGGGAAGTGACA
TAGCAGGAACTACTAGTACCCTTCAGGAACAAATAACATGGATGACAAATAATCCACCTATCCCAGTAGG
AGAAATCTATAAAAAATGGATAATCATGGGATTAAATAAAATAGTAAGGATGTATAGTCCTACCAGCATT
CTGGACATAAGACAAGGACCAAAGGAACCCTTTAGGGACTATGTAGACCGGTTCTATAAAACTCTAAGAG
CCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAACGCGAACCCAGA
TTGTAAGACTATATTAAAAGCATTAGGACCAGCAGCTACACTAGAGGAAATGATGACAGCATGTCAGGGA
GTGGGAGGACCTGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAGGTGCCA
TAATGATGCAGAAAGGCAATTTTAGGAACCAGGTTGTTAGGTGTTTCAATTGTGGCAAAGTAGGGCACAT
AGCCAAAAATTGCAGGGCCCCTAGGAAGAAGGGCTGTTGGAAATGTGGAAAAGAAGGACACCAAATGAAA
GATTGTGATCAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCCACAAAGGAAGGCCAGGGAATT
TTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGAGGAGACAACAAC
TCCCTCTCAGAAGCAGGAGCCACAAGAATATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCC
TCGTCACAATAAAGATAGGGGGGCAGCTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATT
AGAAGAAATGAATTTGCCCGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTA
AGACAGTATGATCAGATACCCATAGAAATTTGTGGAAATAAAGCTATAGGTACAGTGTTAATAGGACCTA
CACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTCTAAATTTTCCCATTAGTCC
TATTGAGACTGTACCAGTAAAATTGAAGCCAGGAATGGATGGTCCAAAAGTTAAACAATGGCCATTAACA
GAAGAAAAAATAAAAGCATTAGCAGAAATTTGTGCAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTG
GGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAAAAGAAAGACAGTACTAAATGGAGAAAGTT
AGTAGATTTTAGAGAACTTAATAAGAAAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCC
GCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTCTCAGTTCCCTTAG
ATAGAGAATTCAGAAAGTATACTGCATTTACCATACCTAGTGTAAACAACGAGACACCAGGGATTAGATA
TCAGTATAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATC
TTAGAGCCTTTTAGAAAACAAAATCCAGAAATAGTTATCTATCAATACGTGGATGATTTGTATGTAGGAT
CTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTGAAGTGGGGATT
TACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGGTATGAACTCCATCCTGAT
AAATGGACAGTACAGCCTATAGTGCTGCCAGAGAAAGACACCTGGACTGTCAATGACATACAGAAGTTAG
TGGGAAAATTGAATTGGGCAAGTCAGATTTATGCAGGGATTAAAGTAAGGCACTTATGTAAACTCCTTAG
GGGAACCAAAGCACTAACAGAAGTAATACCTCTAACAGAAGAAGCAGAATTAGAATTGGCAGAAAACAGG
GAGATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGA
AGCAGGGGCAAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTAAAGACAGGAAAATA
TGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAGCCACA
GAAAGCATAGTAATATGGGGCAAGACTCCTAAATTTAGACTACCCATACAAAAGGAAACATGGGAATCAT
GGTGGACAGATTATTGGCAAGCCACCTGGATTCCTGAGTGGGAATTTGTCAATACCCCTCCCTTAGTGAA
ATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTACGTAGATGGGGCAGCTAAC
AGGGAGACTAAACTAGGAAAAGCAGGATATGTTACCGACAGAGGAAGACAAAAGGTTGTCTCCCTGACTG
ACACAACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCACTGCAGGATTCAGGATTAGAAGTAAA
CATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTA
GTCAGTCAAATAATAGAGGAGTTAATAAAAAAGGAAAAGGTCTACCTGACATGGGTACCAGCACACAAAG
GAATTGGGGGAAATGAAAAAGTAGATAAATTAGTCAGTGCTGGGATCAGGAAAGTACTATTTTTAGATGG
AATAGATAAGGCCCAGGAAGAACATGAAAAATATCACAATAATTGGAAAGCAATGGCTAGTGATTTTAAC
CTGCCACCTATAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGGGAAGCCATGC
ATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAGGAAGAGTTATCCT
GGTAGCAGTTCATGTAGCCAGTGGGTATATAGAAGCAGAAGTGATCCCAGCAGAGACAGGGCAGGAAACA
GCATACTTTCTCTTAAAATTAGCAGGAAGATGGCCAGTAAAGACAATACATACAGACAATGGCAGCAACT
TCACCAGTAGTGCGGTCAAGGCCGCCTGTTGGTGGGCGGGGGTCAAGCAGGAATTTGGCATTCCCTACAA
TCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGAT
CAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAGAGGGGGGA
TTGGGGACTATAGTGCAGGGGAGAGAATAATAGACATAATAGCAACAGACATACAAACCAAAGAATTACA
AAAACAAATTACAAAAATTCAAAATTTTCGGGTCTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGA
CCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAAGAGTGACATAAAAGTAGTAC
CAAGAAGAAAAGTAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTATGGCAAGTAG
ACAGGATGAGGATTAGAACATGGAAAAGTTTAGTGAAACACCATATGTATATATCAAGGAAAGCTAAGGA
CTGGTTTTATAGACATCACTATGAAAGCACTCATCCAAAAATAAGTTCAGAAGTACACATCCCACTAGAG
GATGCTGAATTGGTAGTAACAACATATTGGGGTCTGCATACAGGAGAAAGAGAATGGCATTTGGGTCAGG
GAGTCTCCATAGAATGGAGGAAAAAGAGATATAGCACACAAGTAGACCCTGACCTAGCAGACCAACTAAT
TCATCTGTATTACTTTGAATGTTTTTCAGACTCTGCCATAAGAAATGCCCTGTTAGGACATAGAATTAGA
CATAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTTTACAGTACTTGGCACTAACAGCATTAA
TAAAACCAAAAAGGAGAAAGCCACCTTTGCCTAGTGTTGCGAAACTGACGGAGGACAGATGGAACAAGTC
CCAGCAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACACTAGAACTTTTAGAGGAGCTTAAGA
ATGAAGCTGTGAGACACTTTCCCAGGATATGGCTTCACAACTTAGGACAACATATCTATGAAACTTATGG
GGATACTTGGGTAGGAGTGGAAGCCATAATAAGAATACTGCAACAACTGCTGTTTATCCATTTCAGAATT
GGATGTCAACATAGCAGAATAGGCATTATTCGACAGAGGAGAGCAAGAAATGGATCCAGTAGACCCTAAA
CTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAGGACTGCTTGTACCAATTGCTATTGTAAAAAGTGTT
GCTTTCATTGCCAAGTTTGCTTCATAACAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACA
GAGACGAAGAGCTCCTCCAGACAGTCAGATTGATCAAGCTTCTCTACCAAAGCAGTGAGTAGTACCTGTA
ATGCCATCTTTATATATCTTAGGAATAGTAGCATTAGTAGTAGCAGCAATACTAGCAATAGTTGTGTGGT
CCATAGTGTTAATAGAATATAGGAAAATATTAAAACAAAAGAAAATAGACAAGATAATTGATAGGATAAG
AGAAAGAGCAGAAGATAGTGGCAATGAGAGTGAAGGGGATCAGGAGGAATTGTCAGCACTCGTGGAGATG
GGGCACTACGCTCACCATGCTCCTTGGAATATTGATGATCTGTAGAGCTGCAGAACAGTTGTGGGTCACA
GTCTACTATGGGGTACCTGTGTGGAGAGAAGCAAAAACCACTCTATTTTGTGCGTCAGATGCTAAAGCAT
ATGATACAGAAGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAACT
AGTATTGGTAAATGTGACAGAAAACTTTAATGCATGGGAAAATAACATGGTAGAACAAATGCATGAGGAT
ATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATT
GCAATGATTTAAATACCACCACTAGTAATACCACTGGTACTGAAGGGTTAACAATGGATAAAGGAGAAAT
GAAAAACTGCTCTTTCAATATCACCACAGACATAAGCAATAAGAAGCAGAAACAGTATGCACTTTTTTAT
AAACTTGATGTAGTACAAATGAATAATAATAATAATAGCTATAGGCTGATAAGTTGTAACACCTCAGTCA
TTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATATATTATTGTGCCCCAGCTGGGTTTGC
GATTCTAAAATGTAATGATAAATCGTTCAGTGGAAAAGGAGAATGTAAAAATGTCAGCACAGTGCAATGT
ACACATGGAATTAGGCCAGTAGTATCTACTCAATTGCTGTTAAATGGCAGTCTAGCAGAAGAAGATGTAA
TAATCAGATCTGACAATTTCACGGACAATGCTAAAACCATAATAGTACAACTGAACGAAACTGTAGATAT
TCACTGTATAAGGCCCAACAATAATACAAGAAAACGTATAACTATGGGACCAGGGAAAGTATATTATACA
ACAGGACAAATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTGAAGCAAAATGGAATAACACTT
TAAGAAGGGTAGTTAGAAAATTAAGAGAAAAATTTAATAAAACAATAGTCTTTAATCAATCCTCAGGAGG
AGACCCAGAAATTGTAATGCACACTTTTAATTGTGGAGGGGAATTTTTCTATTGCAACTCAACCAAACTA
TTTAATAGCATTTGGGATAATAATAAAGATAGCACTAAAACAAATGAACCAAATGATGGAAAAAATATCA
CACTCCCATGCAGAATAAAACAAATTATAAACATGTGGCAGGGAGTAGGAAAAGCAATGTATGCCCCTCC
CATCAGAGGACAAATTAGATGTACATCAAATATTACAGGGCTACTATTAACAAGAGATGGTGGCAAGAAC
AATGGCACTAATGGGACCGAGGTCTTCAGACCTGGAGGAGGAAATATGAAGGACAATTGGAGAAGTGAAT
TATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAGTAGCACCCACCACGGCAAAGAGACGAGTGGT
GCAGAGAGAAAAAAGAGCAGTGACACTAGGAGCTCTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACT
ATGGGCGCAGCGTCAATGACGCTGACGGTACAGGCCAGACTATTATTGTCTGGTATAGTGCAACAGCAGA
ACAACTTGCTGAGGGCTATTGAGGCGCAACAACATCTGTTGCAACTCACGGTCTGGGGCATCAAGCAGCT
CCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTAGAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCT
GGAAAACTCATCTGCACCACTGCTGTGCCTTGGAATGCTAGTTGGAGTAATAAATCTAGGAGTGAGATTT
GGAATAACATGACCTGGATGCAATGGGACAAAGAAATTCATAATTACACAAACTTAATATACACCTTAAT
TGGAGAATCGCAAATCCAGCAAGAAAAAAATGAACAAGAACTATTGGGATTAGATAAATGGGCAAGTTTG
TGGAATTGGTTTGACATAACAAAATGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTGA
TAGGTTTAAGAATAGTTTTTACTGTACTTTCTATAATGAATAGAGTTAGGCAGGGATACTCACCATTATC
ATTTCAGACCCGCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAGGAACAGAAGAAGAAGGTGGAGAG
AGAGACAGAGACAGATCCGGACCATTAGTGGATGGATTCTTAGCAATCATCTGGGTCGATCTACGGAGCC
TGTGTCTCTTCCTCTACCACCGATTGAGAGACTTACTCTTGATTGTGACGAGGACTCTGGAACTTCTGGG
ACGCAGGGGGTGGGAGATCCTCAAATATTGGTGGAATCTCCTACAGTATTGGAGTCAGGAACTAAAGAAT
AGTGCTGTTAGCTTGCTCAACGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAATAG
TACAAAGAACTTTTAGAGCTATCCTCCACATACCTGTAAGAATAAGACAGGGCTTGGAAAGGGCTTTGCT
ATAAGATGGGTGGCAAGTGGTCAAAACGTAGTATTGTGGGATGGCCTACAATAAGAGAAAGAATGAGACG
AGCCGCACCAGCAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGCATCTCGAGACCTGGAAAGACATGGA
GCACTCACAAGTAGCAATACAGCAGCTAACAATGCTGCTTGTGCCTGGCTAGAAGCACAAGAGGATGAGG
AGGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTACAAGGCAGCTGTAGATCTTAG
CCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAGCAAAGACAGGATATCCTTGAT
CTGTGGGTCTACCACACACAAGGCTACTTCCCTGATTGGCAGAATTACACACCAGGGCCAGGGACCAGAT
ATCCCCTGACCTTTGGATGGTGCTTTAAGCTAGTACCAGTTGAACCAGAGAAGATAGAAGAGGCCACTGA
AGGAGAAAACAACTGCTTGTTACACCCGATAAACCAGCATGGGATGGACGACCCGGAGAGAGAAGTGTTA
GTGTGGAGGTTTGACAGTCGCMTAGCACTCCGTCACGTGGCCCGAGAGATGCATCCGGAGTACTACAAGG
ACTGCTGACATCGAGATTTCTACAAGGGACTTTCCACTGGGGACTTTCCGGGGAGGCGTGGCCTGGGCGG
GACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTR
GYTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAAAGC
TTGCCTTGAGTGCA
>AY173951.1 HIV-1 isolate BK132 from Thailand, complete genome
GGACCTGAAAGCGAAAGAGAAACCAGAGGAGCTCTCTCGACGCAGGACTCGGCTTGCTGAAGCGCGCACG
GCAAGAGGCGAGGGGCGGCGACTGGTGAGTACGCCAAAAATTTTGACTAGCGGAGGCTAGAAGGAGAGAG
ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGACAATTAGATAGATGGGAGAAAATTCGGTTACGGCCAG
GGGGAAAGAAAAAATATAGATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAA
TCCTGGCCTATTGGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCAAGCCTTCAGACA
GGATCAGAAGAACTTAGATCATTATATAATACAATAGCAGTCCTCTATTGTGTACATCAAAAGATAGAGG
TAAAAGACACCAAGGAAGCTTTAGAGAAGATAGAGGAAGAACAAAACAAAAGTAAGAAAAAGGCACAGCA
AGCAGCAGCTAACACAGAAAACAGCAGCCAGGTTAGCCAAAATTACCCTATAGTGCAAAATATGCAGGGG
CAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCTT
TCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCAT
GCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCA
GAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAA
GTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACACATAATCCACCTATCCC
AGTGGGAGAAATTTACAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACC
AGCATTTTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAGACTC
TAAGAGCCGAGCAAGCCTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAA
CCCAGATTGTAAGACTATTTTAAAAGCATTGGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATGT
CAGGGAGTGGGAGGTCCCGGCCATAAGGCAAGAGTTTTGGCGGAAGCAATGAGCCAAGTGACAAATTCAG
CTACCATAATGATGCAGAAAGGCAATTTTAGGAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAA
AGAAGGGCACATAGCCCGAAATTGCAGGGCCCCTAGGAAGAAGGGCTGTTGGAGATGTGGAAAGGAAGGA
CACCAAATGAAAGATTGTACTGAAAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGAA
GGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCGACAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGA
AGAGACAACAACTCCCTCTCAGAAGCAGGAGACAATAGACAAGGAACTATATCCTTTAACTGCCCTCAAA
TCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATAC
AGGGGCAGATGATACAGTATTAGAAGAAATGAATTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGA
ATTGGAGGTTTTATCAAAGTAAGACAATATGATCAGATACTTGTAGAAATCTGTGGACATAAAGCTATAG
GTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATTTGTTGACTCAGCTTGGTTGCAC
TTTAAATTTTCCTATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAA
GTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGG
AAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGA
CAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAAAGAACTCAAGACTTCTGGGAAGTT
CAATTAGGAATACCACATCCCGCAGGGTTGAAAAAGAAAAAATCAGTAACGGTACTGGATGTGGGTGATG
CATATTTTTCAGTTCCCTTAGATAAAGACTTCAGGAAATATACTGCATTTACCATACCGAGTACAAACAA
TGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTC
CAATGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACA
TGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACA
ACATCTGTTGAGGTGGGGATTTACCACACCAGATAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATG
GGTTATGAACTCCATCCTGATAAATGGACAGTACAACCTATAGTGCTGCCGGAAAAAGACAGCTGGACTG
TCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAA
GCAGTTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAGTAGTACCACTAACAAAAGAGGCAGAG
CTAGAACTGGCAGAAAACAGGGAAATTCTAAAAGAAACAGTACATGGAGTGTATTATGACCCATCAAAAG
ATTTAATAGCAGAAATACAGAAGCAGGGGCAAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAA
AAATCTAAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAG
GCAGTGCAAAAAATAGCCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTCAAACTACCCATAC
AAAAAGAAACATGGGAAACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGT
CAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAAAAAGAGCCCATAGTAGGAGCAGAAACCTTC
TATGTAGATGGGGCGGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTGACTAACAGAGGAAGAC
AAAAAGTTGTCTCCCTAACTGACACAACAAATCAAAAGACTGAGTTACAAGCAATTCACCTAGCTTTGCA
GGATTCGGGATTAGAAGTAAATATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCA
GATAAAAGTGAATCAGAGATAGTCAGTCAAATAATAGAGCAGTTAATACAAAAGGAAAAGGTCTACCTGG
CATGGGTACCAGCACACAAGGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAG
GAAAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGAGCATGAAAAATATCACAGTAATTGGAGA
GCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTC
AGCTAAAAGGAGAAGCCATGCATGGACAGGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACA
TTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCA
GCAGAGACAGGGCAGGAAACAGCATACTTTCTCTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATAC
ATACAGACAATGGCAGCAATTTCACCAGTACTACGGTTAAGGCTGCCTGTTGGTGGGCGGGGATCAAGCA
GGAATTTGGCATCCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATAAATAAAGAATTAAAGAAA
ATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAAACAGCAGTACAAATGGCAGTATTTATCCACA
ATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGA
CATACAGACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGC
AGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTGTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATA
ATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGG
TGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAAAACATGGAAAAGTTTAGTAAAACACCATATGTA
TGTTTCAAAGAAAGCTAAGGGATGGTTGTATAGACATCACTATCAAAGCATTCATCCAAGAATAAGTTCA
GAAGTACATATCCCACTAGGAGAGGCTAGCTTGGTAATAAAGACATATTGGGGTCTGCATACAGGAGAAA
GAGAATGGCATTTGGGTCAAGGAGTCTCCATAGAATGGAGGAAAGGAAGATATAACACACAAGTAGACCC
AGGCCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCC
ATATTAGGACATATAGTTAGTCCTAGTTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAGT
ACTTGGCACTAACAGCATTAAGAACACCAAAGAAGATAAAGCCACCTTTGCCTAGTGTTAGGAAACTGAC
AGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGAGAGCCATACAATGAATGGACACTAG
AGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACACTTTCCTAGGACATGGCTCCACGGATTAGGGCA
ATATATCTATGAAAATTATGGGGACACTTGGGCAGGAGTGGAGGCCATAATAAGAATTCTGCAACAACTG
CTGTTTATTCATTTCAGGATTGGGTGTCGACATAGCAGAATAGGCATTACTCTACAAAGGAGAGCAAGAA
ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAGACGGCTTGTAACA
CTTGCTATTGTAAAAAATGTTGCTTTCATTGCCAAGTTTGTTTCACAAAAAAAGCCTTAGGCATCTCCTA
TGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAGGACCGTCAGACTCATCAAGCTTCTCTATCA
AAGCAGTAAGTAGTATATGTAATGCACTCTTTACAAATATTAGGAATAGTAGCATTAGTAGTAGCAGGAA
TAATAGCAATAGTTGTGTGGTCCATAGTAATCATAGAATATAGGAAAATATTAAGACAAAGGAAAATAGA
CAGGTTAATTGATAGAATAATAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGAGATCAGGAAGAA
TTGTCAGCACTTGTGGAGATGGGGCATCTTGCTCCTTGGGATATTAATGATTAGTAGTGCTGCAGAAAAT
TTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAACCACCACTCTATTTTGTGCATCAG
ATGCTAAAGCATATGATACAGAAGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAA
CCCACAAGAAGTAGTATTGGTAAATGTGACAGAAAATTTTAAYATGTGGACAAATAACATGGCAGAACAG
ATGCATGAGGATATAATCAGTTTATGGGATCAAAGTCTAAAGCCATGTGTAAAATTAACTCCACTCTGTG
TTACTTTAAATTGCACTGATTTGAGAAATACTACTAATACCAATAGTACCGCCGAGGAAATGGAGGCGAA
AGGAGAAATGAAAAACTGCTCTTTCAATATCACCACAAGCATAAGGAATAAGTTGCAGAAAGAATATGCA
CTCTTTTATAAACTTGATATAGTACCAATAAATAATGATAATACTAGCTATAGGTTGATAAGTTGTAACA
CCTCAGTCATTACCCAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGC
TGGTTTTGCGATTCTAAAGTGTAATGATAAGAAGTTCAGTGGAAACGGACCATGTAAAAATGTCAGCACA
GTACAATGTACACATGGAATTAAGCCAGTAGTATCAACTCAACTGCTGCTAAATGGCAGTCTAGCAGAAG
AAGAGGTAGTAATTAGATCTGAAAATTTTACAGACAATGCTAAAACCATAATAGTACAGCTGAAAGAACC
TGTAGAAATTAATTGTACAAGACCTAACAACTATACAAGGAAAAGAATAACTATGGGACCAGGGAGAGTA
TATTATACAACAGGAGAAATAATAGGAGATATAAGACGAGCACATTGTAACATTAGTAGCACAAAATGGA
ATAACACTTTAGGACAGATAGTTAAAAAATTAAAAGAACAATTTAACAATAATACAATAGTCTTTAAGAA
ATCCTCAGGAGGGGACCCAGAAATTGTAATGCACAGTTTTATTTGTGGAGGGGAATTTTTCTTCTGTAAT
TCAACAAAACTGTTTAATAGTACTTGGAATAGCACTGAAGGAAATGACGATGGAGAGGAAAGAAATATCA
CACTCCCATGCAGAATAAAACAAATTGTAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCC
CATCGGAGGACAAATTAGATGCACCTCAAATATTACAGGGCTGCTATTAACAAGAGATGGAGGTAACCAA
AATGGGACCAACGAGACTGAAATCTTCAGACCTGGAGGAGGAAATATGAGGGACAATTGGAGAAGTGAAC
TATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAGTAGCACCCACTAAGGCAAAGAGAAGAGTGGT
GCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACT
ATGGGCGCAGCGTCAGTGACGCTGACGGTACAGGCCAGACTATTATTGTCTGGTATAGTGCAACAGCAGA
ACAATCTGCTGAGGGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCT
CCAGGCAAGAGTCTTAGCTGTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCT
GGAAAACTCATCTGCACCACTGCTGTGCCTTGGAATGCTAGTTGGAGTAATAAATCTCTGGATGAGATTT
GGAATAACATGACCTGGATGCAATGGGAAAGAGAAATTAACAATTACACAGGCTTAATATACACCTTAAT
TGAAGAATCGCAAAACCAACAAGAAAAGAATGAACTAGATTTACTGCAATTAGATAAATGGGCAAGTTTG
TGGAATTGGTTTGACATAACAAACTGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGATTGG
TAGGTTTAAGAATAATTTTTACTGTACTTTCTATAGTGAATAGGGTTAGGCAGGGATACTCACCATTATC
GTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGGAGGAATCGAAGAAGAAGGTGGAGAG
AGAGACAGAGACACATCCGGACGCTTAGTGGATGGATTCTTAGCAATTTTCTGGGTCGATCTGCGGAACC
TGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGG
ACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTACAGTATTGGAGTCAGGAACTAAAGAAT
AGTGCTGTTAGCTTGCTCAATGCCACAGCTATAGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAT
TACAAAGAGTTTATAGAGCTATTCTCAACATACCTACAAGAATCAGACAGGGCTTGGAAAGGGCTTTGCT
ATAAGATGGGTAGCAAGTGGTCAAAAATGAGTGGGTGGCCTGCTGTAAGGGAAAGAATGAGAAGAACTAA
GCCAGCTGAGCCAGCAGCAGATGGAGTGGGAGCAGCATCTAGAGACCTGGAAAAACATGGAGCAATCACA
AGTAGCAATACAGCAGCTACCAATGCTGATTGTGCCTGGCTAGAAGCACAAGAGGAGGAGGGGGAGGTGG
GTTTCCCAGTCAAACCTCAGGTACCTTTAAGACCAATGACTTACAAGGGAGCTCTAGATCTTAGCCACTT
TTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAACAAAGACAAGATATCCTTGATCTGTGG
GTCTACCATACACAAGGCTACTTCCCTGATTGGCAGAATTACACACCAGGGCCAGGGGTCAGATTCCCAC
TGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGAGCCAGACAAGGTAGAAGAGGCCAATGAAGGGGA
AAACAACTGCTTGTTACACCCTATGAGCCAGCATGGGATGGAAGACCCGGAGAAAGAAGTGTTAATGTGG
AAGTTTGACAGCCGCCTGGCATTGCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAGGACTGCT
GACATCGAGCTTTCTACAAGGGACTTTCCGCTGGGGACTTTCCAGGGAGGCGTGGCCTGGGCGGGACTGG
GGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGA
CCAGATCAGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCT
TGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGT
>AY371157.1 HIV-1 isolate 01CM.4412HAL from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds
GCGAGAGCGTCAATATTAAGCGGGGGAAAATTGGATGCATGGGAAAAAATTCGGTTACGGCCAGGGGGAA
GCAAAAAGTATAGGCTAAAACATCTAATATGGGCAAGCAATGAGCTAGAACGATTTGCACTTAATCCTGG
CCTTTTAGAGACATCAGATGGCTGTAAACAAATACTAGGCCAGCTACAACCAGCTCTTAAAACAGGAACA
GAAGAACTTAGATCATTATTTAATGCAGTAGCAGTACTCTATTGTGTACATGAAAGGATAGAGGTAAAGG
ACACCAAGGAAGCCTTAGACAAGATAGAGGAAGAACAAAACAAAAGTAAGAAAAAAGCACAGCAAGCAGC
AGCTGACACAGGGGACAACAAACAGGTCAGCCAAAATTATCCTATAGTGCAGAACTTACAGGGGCAAATG
GTACACCAAGCCCTATCACCCAGAACCTTGAACGCATGGGTAAAAGTAATAGAGGAAAAGGCTTTCAACC
CAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAGGATTTAAATACCATGCTAAA
CACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGG
GACAGGCTACATCCAGTGCAAGCAGGGCCTGTTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGATA
TTGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGGTGGATGACAAGTAATCCACCAATCCCAGTAGG
GGAAATCTATAAAAGATGGATAATCTTGGGATTGAATAAAATAGTAAGAATGTATAGCCCTGTCAGTATT
TTGGATATAAGACAAGGACCAAAAGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAG
CCGAGCAAGCTACACAGGAAGTAAAAAATTGGATGACAGAAACCTTGTTGGTTCAAAATGCAAACCCAGA
CTGTAAAACTATCTTAAAGGCGTTGGGGCCAGGGGCTACACTAGAAGAAATGATGACAGCATGTCAGGGA
GTGGGAGGGCCCGGCCATAAAGCAAGAGTTTTGGCTGAGGCAATGAGCCAAGCAACAGCAGGTATGAATG
CTGCAATAATGATGCAGAGGGGCAATTTTAAGGGCCCAAAGAGAATTGTTAAGTGTTTCAACTGTGGCAA
AGAAGGGCACATAGCAAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAGAGAAGGA
CACCAAATGAAAGATTGCACAGAAAGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAACAAGGGAA
GGCCAGGGAACTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCGGGTTCGGGGA
GGAGATAGCCCCCTCTCAGAAACAGGAGCAGAAAGACAAAGACCAGGAACTGTATCCTTTAACTTCCCTC
AAATCACTCTTTGGCAACGACCCCTTGTCACAATAAAAATAGGGGGACAGCTAAAAGAAGCTCTGTTAGA
TACAGGAGCAGATGATACAGTATTAGAAGACATAAATTTGCCAGGAAAATGGAAACCAAAAATGATAGGG
GGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCTATAGAAATTTGTGGACAGAAGGCTA
TAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATTTGTTGACCCAGATTGGCTG
CACTCTAAATTTTCCAATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCA
AAAATTAAACAATGGCCATTAACAGAAGAAAAAATAAAAGCATTAACAGATATTTGTAAAGAAATGGAAA
AGGAAGGAAAAATTTCAAGAATTGGGCCTGAAAATCCATACAATACTCCAATATTTGCTATAAAGAAAAA
AGACAGTACTAAGTGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAA
GTTCAATTAGGAATACCGCATCCTGCCGGGCTGAAAAAGAAAAAATCAGTAACAGTACTAGATGTAGGTG
ATGCATACTTTTCAGTTCCCTTAGATAAAGAGTTTAGGAAATACACAGCATTCACCATACCTAGTACAAA
CAATGAAACACCAGGAATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCGATA
TTCCAATGTAGTATGACAAAGATCTTAGAGCCTTTTAAAAAACAAAATCCAGAACTAATTATCTATTCAT
ACATGGATGATTTGTATGTAGGATCTGATTTGGAAATAGGGCAGCATAGAGCAAAAATAGAAAAATTAAG
AGAACATCTATTAAAATGGGGACTCACCACGCCAGATAAAAAACATCAGAAAGAACCTCCATTTCTTTGG
ATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAACACTGCCAGAAAAAGAAAGCTGGA
CTGTCAATGATATACAGAAGCTAGTGGGAAAATTAAATTGGGCAAGCCAGATTTATCCAGGAATTAAAGT
AAGGCAATTATGTAAACTCCTTAGGGGAGCTAAAGCATTAACAGAGATAATACCACTAACAAAAGAGGCA
GAATTAGAACTGGCAGAAAACAAGGAAATTCTCAAAGAACCAGTACATGGAGCGTATTATGACCCATCAA
AAGACTTAATAGCAGAAGTACAGAAACAAGGGGATGGCCAATGGACTTGGCAAATTTATCAAGAACCATT
TAAAAATCTGAAAACAGGAAAGTATGCAAGAATGAGGAGTGCCCACACTAATGATGTAAAACAATTAACA
GAGGCAGTGCAAAAAATAGCCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAGACTACCCA
TACAAAAGGAAACATGGGACGCATGGTGGATGGAGTATTGGCAGGCCACTTGGATTCCTGAGTGGGAGTT
TGTCAATACCCCTCCTTTAGTAAAATTATGGTATCAGTTAGAAAAGGAACCCATAATAGGAGCAGAAACT
TTCTATGTAGATGGGGCATCTAATAGAGACACTAAATTAGGAAAAGCAGGATATGTTACTGACAAGGGAA
GACAGAAAGTTGTCTCGTTTACTAATACTACAAATCAGAAGACTGAATTACAAGCAATTAATCTAGCTTT
GCAGGATTCGGGAGCAAAAGTGAACATAGTAACAGATTCACAATATGCATTAGGAATCATTCAAGCACAA
CCAGATAAGAGTGAATCAGAAATAGTCAATCAAATAATAGAACAGTTAATAAAAAAGGAAAAGGTCTACC
TGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAATTAGTTAGTAGTGGAAT
CAGGAAAGTACTATTTTTGGATGGAATAAGTGAGGCTCAAGATGATCATGACAAATATCACAGCAATTGG
AGAGCAATGGCTAGTGATTTTAACCTACCACCTATAATAGCAAAAGAAATAGTAGCTAGCTGTGATAAAT
GTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAATTAGATTGTAC
ACATCTAGAGGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGCTATATAGAAGCAGAAGTTATT
CCATCAGAAACAGGGCAGGAGACAGCATACTTTCTCTTAAAATTAGCAGGAAGATGGCCAGTAAAAGTAG
TGCATACAGACAATGGCAGCAATTTTACCAGTGCTGCCGTTAAGGCCGCCTGTTGGTGGGCAGGTATCAA
GCAGGAATTCGGAATTCCCTACAATCCCCAAAGTCAGGGAGTAGTAGAATCTATGAATAATCAATTAAAG
AAAATTATAGGGCAGGTAAGAGATCAAGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATTC
ACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAAC
AGACATACAAACTAAAGAATTACAAAAACAAATTTCAAAAATTCAACATTTTCGGGTTTATTACAGGGAC
AGCAGAGATCCAATTTGGAAAGGACCAGCAAAACTTCTGTGGAAAGGTGAAGGGGCAGTAGTAATACAAG
ACAATAGTGACATAAAGGTAGTACCAAGAAGAAAAGCAAAAATCATTAGGGATTATGGAAAACAGATGGC
AGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAACACATGGAAAAGTTTAGTGAAATACCATAT
GTATATTTCAAAGAAAGCCCAAGGATGGTTTTATAGACATCACTATGATAGCCATCACCCAAAAATAAGT
TCAGAAGTACACATCCCATTAGGGGATGCTAGACTGGTAGTAACAACATATTGGGGTCTGCATACAGGAG
AAAGAGAATGGCATCTGGGTCAGGGAGTCTCCATAGAGTGGAGAAAAAGGAGATATAGCACACAAATAGA
CCCTGGTCTGGCAGACCAACTAATTCATATGTATTACTTTGATTGTTTTACAGACTCTGCCATAAGAAAA
GCCATATTAGGACATAGAGTTAGTCCTAGGTGTGAATATCCAGCAGGACATAACAAGGTAGGATCCTTGC
AGTATTTGGCACTTACAGCATTAATAGCGCCAAAAAGGAAAAAACCACCTTTGCCTAGTGTTAGGAAGTT
AACAGAAGATAGATGGAACAAGCCCCATCAGACCAAGGGCCACAGAGGGAGCCATACAATGAGTGGACAT
TAGAGCTTTTAGAGGAGCTCAAGAGTGAAGCTGTTAGACATTTTCCTAGGATATGGCTTCATGGCTTAGG
ACAACATATTTATGATACCTATGGGGATACCTGGACAGGAGTTGAAGCTATAATAAGAATCCTGCAACAA
CTGCTGTTCATTCATTTCAGAATTGGGTGTCAACATAGCAGAATAGGCATTACTCGACAGAGAAGAGCAA
GAAATGGATCCAGTAGATCCTAACCTAGAGCCCTGGAACCATCCAGGAAGTCAGCCGAGTACTGCCTGTA
ACAATTGTTATTGTAAGAGATGTTGCTATCATTGCCTGCTTTGCTTCACTAAGAAAGGCTTAGGCGTCTC
CTATGGCAGGAAGAAGAGAGGACAGCGACGAAGACCTCCTCAAGACAATCAGACTCATCAAGTTTCTGTA
CCAGAGCAGTAAGTAATACATGTAATGCAATCTTTAGAGATATTAGCAATAGTAGCATTGGTAGCAGCGC
TAATAATAGCAATAGTTGTGTGGACCATAGTATATATAGAATATAGAAAAATAAAAAAGCAAAGGCAAAT
AGACCGGCTAATTGATAGAATAAGAGAAAGAGCAGAGGACAGTGGCAATGAGAGTGATGGGGATAGAGAG
GAATTATCAACACTCATGGAAATGGGGCACCATGCTCCTTGGGATGTTGCTGATGACATATAGTGCAGCA
GGTAATTTGTGGGTCACAGTATATTATGGGGTGCCTGTATGGAAAGAAGCAAAAACCACTCTATTTTGTG
CATCAGATGCTAAATCATATAAAACAGAGGCACATAATATCTGGGCTACACATGCCTGTGTACCCACGGA
CCCCGATCCACAAGAATTAGTACTGGACAATGTCACAGAAAATTTTAACATGTGGAAAAATAACATGGTG
GAGCAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAACCATGTGTAAAATTAACCCCAC
TATGTGTCACTCTAAACTGCAGTAATCCCAACATTACTAATAACAGTAGTGCTAACAACATCAGCATTGT
AAAAAAAATGAAGAACTGCTCTTTCAATACAACCACAATATTGAAGGACAAACAGAAGCAAGAATATGCA
CTTTTTTATATACTTGATATAGTAGGAATAGATAATAGTAGTAATAGGTTAATAAATTGTACCACCTCAG
TCATCACACAGGCTTGTCCCAAGATAACCTCTGAGCCTATTCCCATACATTATTGTGCCCCAGCTGGATT
TGCAATTCTAAAATGTAATGATAAGCTGTTCAATGGAACAGGCCCATGTAGAAATGTCAGCGCAGTACAA
TGTACACATGGAATCAAGCCAGTGGTATCAACTCAATTGCTGTTGAATGGCAGTCTAGCAGAAGAGGTCA
TGGTTAGATCTGAAAATCTCACAGACAATGCTAAAAACATAATAGTCCAGCTTAATAATACTATAAACAT
TACTTGTGTAAGGCCGAACAGCAATACAAGAAAAAGTATAAATCTAGGACCAGGGCAGGCATTCTATGCA
ACATATGCAACAAATATAATAGGAAACATAAGACAGGCACATTGTAATCTTAGTGCAACACAATGGAATA
AAACTCTACACCAGGTAGCACAAAAATTAGGAAAGCTTCTTAACAAGACAAAAATAAATTTTAATTCATC
CTCAGGAGGGGACCCAGAAATTACAACACACAGTTTTGTTTGTGGAGGAGAATTTTTCTACTGCAATACA
TCAGGATTGTTTAATGGAACATGGGATAATGGAACATGGACATGGAATACTAGTGCAGTACCAAATGAAA
CAATCACAATCCCATGTAGAATAAAACAAATTATAAACATGTGGCAGGGAGTAGGAAGAGCAATGTATGC
CCCTCCCATTGAAGGACTAATTAAATGTTCATCAAATATTACAGGGTTACTGTTGACAAGAGATGGTGGC
AATACTAGTGATAGTGCAGAGACTTTTAGGCCTGGAGGGGGAGATATGAGGGACAATTGGAGAAGTGAAT
TATATAAATATAAAGTAGTAAAAATTGAACCACTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGT
GGAAAGAGAAAAAAGAGCAATAGGATTAGGAGCTATGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACG
ATGGGCGCAGCGTCAGTGACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAAA
ATAATTTGCTGAGGGCTATAGAGGCGCAACAGCATCTGTTGCAACTCACGGTCTGGGGCATTAAACAGCT
CCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTAAAGGATCAACAGCTCCTAGGAATTTGGGGTTGCTCT
GGAAAACACATTTGCACCACTAATGTACCCTGGAACTCTAGTTGGAGTAATAGATCTCTAGATGATATTT
GGCAGAACATGACCTGGATGCAATGGGAGAGAGAAATTGAGAATTATACAGGTGTAATATACAGCTTAAT
TGAAGAATCGCAAATCCAGCAAGAAAAAAATGAAAAAGAATTATTAGAATTGGACAAGTGGGCAAGTTTG
TGGAATTGGTTTAGCATATCTAACTGGCTGTGGTATATAAGAATATTCATCATGATAGTAGGAGGCTTAA
TAGGTTTAAGAATAGTTTTTGCTGTGCTTTCTATGGTAAGGAGAGTTAGGCAGGGATACTCACCTCTGTC
GTTCCAGACCCTCCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAG
CAAGACAGAGGCAGATCCATTCGATTGGTGAACGGATTCTCAGCACTTATCTGGGACGATCTGCGGAACC
TGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTAATCTTAATTGCAGCGAGGATTGTGGACCTTCTGGG
ACGCAGGGGGTGGGAAGCACTCAAATATCTGTGGAATCTCCTGCGATATTGGAGTCAGGAACTGAAGAAT
AGCGCTATTAACTTGCTTAACACCACAGCAATAGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAATAA
TACAAAGAGCTGGTAGAGCTGTTCTCCATATACCCAGAAGAATAAGACAAGGTTTCGAAAGGGCTTTGCT
ATAAAATGGGTGGCAAATGGTCAAAAAGTAGCATAGTTGGCTGGCCTGCTATAAGGGAAAGAATAAGAAG
AACTGATCCAGCAGCAGATGGGGTAGGAGCAGCATCCCGAGATCTGGAAAGACATGGGGCAATCACAAGT
AGCAACACAGCAGCTAATAATGCTGCCTGTGCCTGGCTAGAAGCGCAAGAAGAAGAGGAGGTGGGTTTTC
CAGTCACACCTCAGGTACCTGAAAGACCAGTGACTTACAAGGCAGCTGTATATCTTAGCCAATTTTTAAA
AGAAAAGGGGGGACTGGAAGGGCTAGTTCACTCCCAAAAAAGACAAGATATCCTTGATCTTTGGGTCTAC
CACACACAAGGCTTCTTCCCTGATTGGCACAGCTACACACCAGGGCCAG
>AF193276.1 HIV-1 CRF03_AB isolate KAL153 from Russia, complete genome
GCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAAAATTAGATGCATGGG
AAAAAATTCGGTTAAGGCCAGGGGGAAAGGAAAAATATAGAATAAAACACCTAGTATGGGCAAGCAGGGA
GCTGGAAAGATTCGCGCTTAACCCTAGCCTTTTAGAAACATCAGAAGGATGTCAACAAATACTGGAACAG
TTACAACCAACTCTCAAGACAGGATCAGAAGAACTTAAATCATTATATAATACAGTAGCAACCCTCTATT
GTGTACATCAACGGATAGAGATAAAAGACACCAAGGAAGCTTTAGATAAAATAGAGGAAATACAAAATAA
GAGCAAGCAAAAGACCCAACAGGCAGCAACTGGCACAGGAAGCAGCAGCAAGGTCAGTCAAAATTACCCC
ATAGTGCAAAATGCACAAGGGCAAATGACACACCAGTCCATGTCACCTAGGACTTTGAATGCATGGGTGA
AAGTAATAGAAGAAAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTGTCAGAGGGAGCCAC
CCCACAAGATTTAAACATGATGCTGAACATAGTGGGGGGACACCAGGCAGCTATGCAAATGTTGAAAGAT
ACCATCAATGAGGAAGCTGCTGAATGGGATAGGTTACATCCAGCACAGGCAGGGCCTTTTCCACCAGGGC
AGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAAGTAGTAGTACCCTTCAAGAACAAATAGGATGGAT
GACAAGCAACCCACCTATCCCAGTGGGAGACATCTATAAAAGATGGATAATCCTAGGATTAAATAAGATA
GTAAGAATGTATAGCCCTGTTAGCATTTTAGACATAAGACAAGGGCCAAAAGAACCCTTCAGAGACTATG
TAGATAGGTTCTTTAAAACTCTTAGAGCTGAGCAAGCTACACAGGATGTAAAGAACTGGATGACAGAAAC
CCTGCTGGTCCAAAATGCAAATCCAGATTGTAAAACCATTTTAAGAGCATTAGGATCAGGGGCTACATTA
GAAGAAATGATGACAGTATGCCAGGGAGTGGGAGGACCCGGCCATAAAGCAAGGGTTTTGGCCGAGGCAA
TGAGTCAAGTACAAAATGCAAACATAATGATGCAGAAAAGTAATTTTAGGGGCCCAAAAAGAATTAAGTG
TTTCAACTGTGGCAAAGAAGGACACCTAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAA
TGTGGAAAGGAAGGCCATCAAATGAAAGACTGCACTGAGAGACAGGCTAATTTTTTAGGGAGAATTTGGC
CTTCCAGCAAAGGGAGGCCAGGAAATTTTCCTCAGAGCAGACCAGAGCCATCAGCCCCACCAGCAGAAAA
CTTTGGGATGGGGGAAGAGATAACCCCCTCCCTGAAACAGGAACAGAAGGACAGGGAACAGCATCCTCCT
TCAATTTCCCTCAAATCACTCTTTGGCGACGACCCCTTGTCACAGTAAGAATAGGAGGACAGCTAAAAGA
AGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGACATAAATTTGCCAGGAAAATGGAAACCA
AAAATGATAGGGGGGATTGGAGGTTTTATCAAGGTAAGACAGTATGATCAGATACTTATAGAAATTTGTG
GAAAAAAGGCTATAGGTACGGTATTAGTAGGACCTACCCCTGTCAACATAATTGGAAGAAATATGTTGAC
TCAGCTTGGTTGTACTTTAAATTTTCCAATAAGTCCTATTGAAACTGTACCAGTAACATTAAAGCCAGGA
ATGGATGGCCCAAAGGTTAAACAATGGCCATTAACAGAAGAGAAAATAAAAGCATTAACAGACATTTGTA
AGGAGATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGC
CATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGGTTTCAGAGAACTTAATAAGAGAACTCAA
GACTTCTGGGAAGTTCAATTAGGAATACCACACCCTGCAGGGTTAAAAAAGAAAAAATCTGTAACAGTAC
TGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATCAAGACTTCAGAAAGTATACTGCATTTACCAT
ACCTAGTACAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGA
TCACCAGCAATTTTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGAGATAG
TTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAGATAGGGCAGCATAGAACAGAAAT
AGAGGAACTGAGAGAACATCTGCTGAGGTGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCT
CCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACTGTACAGCCTATAGTGTTGCCAGAAA
AAGACAGCTGGACTGTCAATGACATACAGAAGCTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTATGC
AGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAGCCAAAGCACTAACAGAAGTAATACCACTA
ACAGCAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAGATTCTAAAAGAACCAGTACATGGAGTGTATT
ATGACCCATCAAAAGACTTAGTAGCAGAAATACAGAAGCAGGGACAAGGCCAATGGACATATCAAATTTA
TCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGACTGAGGGGTGCCCACACTAATGACGTA
AAACAGTTAACAGAGGCAGTGCAAAAAATAGCCACTGAAAGCATAGTAATATGGGGAAAGACTCCTAAAT
TTAAACTACCCATACAAAAAGAAACATGGGAAACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCC
TGAGTGGGAATTTGTCAATACCCCTCCCTTAGTAAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTA
GGAGCAGAAACTTTCTATGTAGATGGAGCAGCTAATAGGGAGACTAAATCAGGAAAAGCAGGATATGTTA
CTGACAGAGGAAGACAAAAGGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAAT
TCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATC
ATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAGTCAAATAATAGAGCAGTTGATAAAAAAGG
AAAAGGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTTGATAAATTAGT
CAGTGCTGGAATCAGGGAAGTACTATTTTTAGATGGAATAGATAAGGCACAAGAAGAACATGAGAAATAT
CACGGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTGGTAGCAAAAGAAATAGTAGCCA
GCTGTGATAAATGTCAATTAAAAGGAGAAGCCATGCACGGACAAGTAGACTGTAGTCCAGGAATATGGCA
ACTAGATTGTACACATTTAGAAGGAAAAATTATCCTAGTAGCAGTTCATGTAGCCAGTGGATATATAGAA
GCAGAAGTTATTCCAGCAGAAACAGGACAGGAAACAGCATACTTTGTCTTAAAATTAGCAGGAAGATGGC
CAGTAAAAATAATACATACAGACAATGGCAGCAATTTCACCAGTACTGCGGTTAAGGCTGCCTGTTGGTG
GGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAAT
AAACAATTAAAGCAAACTATAGGACAGGTAAGAGATCAAGCTGAACATCTTAAGACAGCAGTACAAATGG
CAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGA
CATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTATAAAAATTCAAAATTTTCGGGTT
TATTACAGAGACAGCAGAGATCCAATTTGGAAAGGACCAGCAAAACTACTCTGGAAAGGTGAAGGGGCAG
TGGTAATACAGGACAATAACGATATAAAAGTAGTACCAAGAAGAAAAGCAAAGATCATTAGGGATTATGG
AAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGT
AAAACACCATATATATATTTCAAAGAAAGCTAGGGGATGGGTTTATAAACATCACTATGAAAGCAGGAAT
CCAAGAATAAGTTCAGAAGTACACATCCCATTAGGGGATGCTAAATTGGTAATAAAAACATATTGGGGTC
TGCATACAGGAGAAAGAGACTGGCATTTGGGCCAGGGAGCCTCCATAGAATGGAGAAAAGAGAGATATAG
CACACAAGTAGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTATTTTGATTGTTTTTCAGAATCT
GCTATAAGAAATGCCATATTAGGACATAGAGTTAGCCCTAGTTGTGAATATCGAGCAGGACATAACAAGG
TAGGATCTCTACAGTACTTGGCACTAGCAGCATTAAGAACACCAAAAAAGATAAAGCCACCTTTGCCTAG
TGTTACGAAACTGACAGAGGATAGATGGAACAAGCCCCAGAGGACCAAGGACCACAGAGGGAGCCATACA
ATGAGTGGACACTAGAGCTTTTAGAGGAGCTTAAGAGTGAAGCTGTTAGACACTTTCCTAGGGTGTGGCT
TCATAGCTTAGGACAATACATCTATGAAACTTATGGAGATACTTGGGCAGGAGTGGAAGCCATAATAAGA
ATTCTGCAACAACTGCTGTTTATTCATTTCAGGATTGGGTGTCAACATAGCAGAATAGGCATTATTCAAC
GGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCATCCAGGAAGCCAGCCTA
AAACTGCTTGTACCAATTGCTATTGTAAAAAGTGTTGTCTTCATTGCCAAGTTTGTTTCATGAAAAAAGG
CTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGACAATCAGACTGAT
CAAGTTTCTCTACCAAAGCAGTAAGTAGTACATGTAATGCAATCCTTAGCAATAGCAGCAATAGTAGCAT
TAGTAGTAGTAGGAATAATAGCAATAGTTGTGGGGTCCATAGTATTCATAGAATATAGGAAAATATTAAG
ACAAAGAAAAATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAA
GGAGATCAGGAAGCACTTATGGAGATGGGGCACCTTGTTCCTTGGGATGCTGATGATCTGTAGTGCTACA
GAAAATTTATGGGTCACAGTTTATTATGGGGTACCTGTGTGGAAAGAAGCAACCACCACTCTATTTTGTG
CATCAGATGCTAAAGCATATAGTAAGGAGGTACATAATGTTTGGGCCACATATGCCTGTGTACCCACGGA
CCCCAGCCCACAAGAAATACCATTGAAAAATGTGACAGAAAATTTTAACATGGGGAAAAATAACATGGTA
GAACAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAGTTAACCCCAC
TCTGTGTTACTTTAAATTGCACTGATTTGAAGAAGGAGGTTACTAGTACCAATACTAGTAGCATAAAAAT
GATGGAAATGAAAAACTGCTCTTTCAACATCACCACAGACCTGAGAGATAAAGTGAAAAAAGAATATGCA
CTCTTTTATAAACTTGATGTAGTACAAATAGATAATGATAGCTATAGGTTGATAAGTTGTAATACCTCAG
TCGTTACACAAGCCTGTCCAAAGATATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCAGCTGGTTT