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malawi.fasta
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malawi.fasta
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>MZ706499.1:1-976 HIV-1 isolate I014A from Malawi pol protein (pol) gene, partial cds
GAGGCTCTTTTGGATACAGGAGCAGATGATACAGTRTTAGAAGAAATGAGTTTGYCAGGAARATGGAAACCAAAAATGAT
AGGAGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAAATACCTATAGAAATTTGTGGAAAAAAGGCTATAGGTR
CAGTATTAGTGGGACCTACACCTGTAAACATAATTGGRAGAAAYATGTTGACTCARCTTGGATGCACACTAAATTTTCCA
ATTAGTCCCATTGAAACTGTACCAGTAAAATTAAAGCCRGGAATGGATGGCCCAAGAGTTAAACAATGGCCATTGACAGA
AGAAAAAATAAAAGCATTAACAGAAATCTGTAAGGAAATGGAGAAGGAAGGAAAAATTACAAAAATTGGGCCTGAAAATC
CATATAACACTCCAGTATTTGCCATAAARAAGAAGGACAGTACTAAGTGGAGAAAATTAGTAGATTTTAGGGAACTCAAT
AAAAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACACCCAGCAGGGTTAAAAAAGAAAAAATCARTRACAGT
GCTGGATGTGGGGGATGCATATTTTTCAGTTCCTTTRGATGARGGCTTCAGGAAATATACTGCATTYACCATACCCAGTA
TAAACAATGAAACACCAGGGATTAGATATCAATATAATGTGCTTCCACARGGRTGGAARGGATCACCAGCAATATTYCAG
AGTAGCATGATAAGAATCTTAGAGCCTTTTAGGGCACAAAATCCAGACATAGTTATCTATCAATATATGGATGACTTGTA
TGTRGGATCTGACTTAGAAATAGGGCAACATAGAGCAAAAATAGAAGASTTAAGGAACCATTTATTGAGATGGGGATTTA
CCACACCAGACAAGAAACATCAGAAAGAACCCCCATTTCTKTGGATGGGGTATGAACTCCATCCTGACAAATGGACAGTA
CAGCCTATACAGCTGC
>AY713413.1:1500-2475 HIV-1 isolate 93MW_965 from Malawi gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), and rev protein (rev) genes, complete cds; vpu gene, complete sequence; and envelope glycoprotein (env) and nef protein (nef) genes, complete cds
GAGGCTCTCTTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATAAATTTGCCAGGAAAATGGAAACCAAAAATGAT
AGGAGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGAGCAAGTACCTATAGAAATTTGTGGAAAAAAGGCTCTAGGTA
CAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATATGTTGACTCAGCTTGGATGCACACTAAATTTTCCA
ATTAGTCCCATTGAAACTATACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGA
AGAAAAAATAAAAGCATTAACAGCAATTTGTGAAGAAATGGAAAAGGAAGGAAAAATTACAAAGATTGGGCCTGAAAATC
CATATAACACTCCAGTATTTGCCATAAAAAAGAAGGACAGTACTAAGTGGAGAAAATTAGTAGATTTCAGGGAACTCAAT
AAAAGGACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACACCCAGCAGGGTTAAAAAAGAAAAAATCAGTGACAGT
GCTGGATGTGGGGGATGCATATTTTTCAGTTCCTTTAGATGAAAACTTCAGGAAATATACTGCATTCACCATACCTAGTA
TAAACAATGAGACACCAGGGATTAGATATCAATATAATGTGCTTCCCCAGGGATGGAAAGGATCACCAGCAATATTCCAG
AGTAGCATGACAAGAATCTTAGAGCCCTTTAGGGCACAAAATCCAGACATAGTTATCTATCAATATATGGATGACTTGTA
TGTAGGATCGGACTTAGAAATAGGGCAACATAGAGCAAAAATAGAGGAGTTAAGGGAACATTTATTGAGATGGGGACTTA
CCACACCAGACAAGAAACATCAGAAAGAACCCCCATTTCTTTGGATGGGGTATGAACTCCATCCTGACAAATGGACAGTA
CAGCCTATACAGCTGC
>JQ617139.1:25-999 HIV-1 isolate MW16 from Malawi pol protein (pol) gene, partial cds
GAGGCTCTCTTAGATACAGGAGCAGATGACACAGTATTAGAAGAAATAAATTTGCCAGGAAAATGGAAACCAAAAATGAT
AGGAGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAAATACTTATAGAAATTTGTGGAAAAAAGGCTATAGGTA
CAGTATTAGTGGGACCTACACCTGTCAACATAATTGGAAGAAATATGTTGACTCAGCTTGGATGCACACTAAATTTTCCA
ATTAGTCCCATTGAAACTATACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAGGTTAAACAATGGCCATTGACAGA
AGAAAAAATAAAAGCATTAACAGCAATTTGTGACGAAATGGAGAAGGAAGGAAAAATTACAAAAATCGGGCCTGAAAATC
CATATAACACTCCAGTATTTGCCATAAAAAAGAAGGACAGTACTAAGTGGAGAAAATTAGTAGATTTCAGGGAACTCAAT
AAAAGAACTCAGGAYTTTTGGGAAGTTCAATTAGGRATACCACACCCAGCAGGGTTAAAAAAGAAAAAATCAGTGACAGT
ACTGGATGTGGGGGATGCATATTTTTCAGTCCCTTTAGATGAARGCTTCAGGAAATATACTGCATTCACCATACCTAGTA
TAAACAATGAAACACCAGGGATTAGATATCAATATAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAG
AGTAGCATGACAAAAATCTTAGAGCCCTTTAGAGCAAAAAACCCAGAAATAGTTATCTATCAATATATGGATGACTTGTA
TGTAGGATCTGACTTAGAAATAGGGCAACATAGAGCAAAAATAGAGGAGTTAAGAGAACATTTATTGAGATGGGGATTTA
CCACACCAGACAAGAAACATCAGAAAGAACCCCCATTTCTTTGGATGGGGTATGAACTCCATCCTGACAAATGGACAGTA
CAGCCTATACAGCTG
>HQ009647.1:25-999 HIV-1 isolate MW16 from Malawi pol protein (pol) gene, partial cds
GAGGCTCTCTTAGATACAGGAGCAGATGACACAGTATTAGAAGAAATAAATTTGCCAGGAAAATGGAAACCAAAAATGAT
AGGAGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAAATACTTATAGAAATTTGTGGAAAAAAGGCTATAGGTA
CAGTATTAGTGGGACCTACACCTGTCAACATAATTGGAAGAAATATGTTGACTCAGCTTGGATGCACACTAAATTTTCCA
ATTAGTCCCATTGAAACTATACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAGGTTAAACAATGGCCATTGACAGA
AGAAAAAATAAAAGCATTAACAGCAATTTGTGACGAAATGGAGAAGGAAGGAAAAATTACAAAAATCGGGCCTGAAAATC
CATATAACACTCCAGTATTTGCCATAAAAAAGAAGGACAGTACTAAGTGGAGAAAATTAGTAGATTTCAGGGAACTCAAT
AAAAGAACTCAGGAYTTTTGGGAAGTTCAATTAGGRATACCACACCCAGCAGGGTTAAAAAAGAAAAAATCAGTGACAGT
ACTGGATGTGGGGGATGCATATTTTTCAGTCCCTTTAGATGAARGCTTCAGGAAATATACTGCATTCACCATACCTAGTA
TAAACAATGAAACACCAGGGATTAGATATCAATATAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAG
AGTAGCATGACAAAAATCTTAGAGCCCTTTAGAGCAAAAAACCCAGAAATAGTTATCTATCAATATATGGATGACTTGTA
TGTAGGATCTGACTTAGAAATAGGGCAACATAGAGCAAAAATAGAGGAGTTAAGAGAACATTTATTGAGATGGGGATTTA
CCACACCAGACAAGAAACATCAGAAAGAACCCCCATTTCTTTGGATGGGGTATGAACTCCATCCTGACAAATGGACAGTA
CAGCCTATACAGCTG
>KT833544.1:61-1036 HIV-1 isolate 177004_180210 from Malawi pol protein (pol) and gag protein (gag) genes, partial cds
GAGGCTCTCTTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATAAATTTGTCAGGAAAATGGAAACCAAAAATGAT
AGGAGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAAATACTTATAGAAATTTGTGGAAAAAAGGCTATAGGTA
CAGTATTAGTGGGACCTACACCTGTCAACATAATTGGAAGAAATATGTTGACTCAGCTTGGATGCACACTAAATTTTCCA
ATTAGTCCCATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAGAGTTAAACAATGGCCATTGACAGA
AGAAAAAATAAAAGCATTAACAGYAATTTGTGAAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATC
CATATAACACTCCAGTATTTGCCATAAAAAAGAAGGACAGTACTAAGTGGAGAAAATTAGTAGATTTCAGGGAACTCAAT
AAAAGAACTCAAGACTTTTGGGAAGTGCAATTAGGAATACCACACCCAGCAGGATTAAAAAAGAAAAAATCAGTGACAGT
GCTGGATGTGGGGGATGCATATTTTTCAGTTCCTTTAGATGAAAACTTCAGGAAATATACTGCATTCACCATACCTAGTA
CAAATAATGAAACACCAGGGATTAGATATCAATATAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAG
AGTAGCATGACAAAAATCTTAGAGCCCTTTAGRACAAGAAATCCAGACATAGTTATCTATCAATACATGGATGACTTGTA
TGTAGGATCTGAYTTAGAAATAGGGCAACATAGAGCAAAAATAGAGGAGTTAAGGGAACATTTATTGARATGGGGACTTA
CCACACCAGACAAGAAACATCAGAAGGAACCCCCATTTCTTTGGATGGGGTATGAACTCCATCCTGACAAATGGACAGTA
CAGCCTATACAGCTGC