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algeria.fasta
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algeria.fasta
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>KT339174.1:1-762 HIV-1 isolate 15011 from Algeria reverse transcriptase (pol) gene, partial cds
CCAATTAGTCCCATTGAAACTGTACCAGTWAAATTAAAGCCAGGAATGGATGGCCCAAAGATTAAACAATGGCCATTGAC
AGAAGAGAAAATCAGAGCATTAACAGAAATTTGTAYRGAAATGGAAAAGGAAGGAAAAATCTCAAAAATTGGGCCTGAAA
ACCCATATAATACTCCAATATTTGCTATAAAGAAAAAAGATAGTACYAAATGGAGAAAATTRGTAGATTTCAGAGAACTT
AATAAAAGAACTCAAGAYTTTTGGGAAGTTCAGTTAGGAATACCACATCCTGCTGGGCTGAAGAAGAAAAAATCAGTAAC
AGTATTAGATGTGGGAGATGCATATTTTTCAGTTCCATTAGATAAAGATTTTAGAAAGTATACAGCATTCACTATACCTA
GTATAAATAATGCAACACCAGGAATTAGRTATCAGTACAATGTGCTTCCACAGGGATGGAAAGGGTCACCAGCAATTTTT
CAGGCAAGYATGACAAARATCTTAGAGCCTTTTAGRACAGCAAATCCAGAGRTRGTGATCTACCAATACATGGATGATTT
ATATGTAGGATCTGACTTAGAAATAGGGCAACATAGAGCAAAAATAGAGGAGTTAAGAGMACAYCTRTTGAAATGGGGAT
TTACCACACCAGATAAAAAACATCAGAAAGAACCCCCATTTCTTTGGATGGGGTATGAACTCCATCCTGACAAATGGACA
GTGCAGCCTATACAACTGCCAGACAAAGATAGCTGGACTGTC
>EU743703.1:1-762 HIV-1 isolate 17805 from Algeria reverse transcriptase (pol) gene, partial cds
CCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAATTAAACAATGGCCATTGAC
AGAAGAAAAAATCAGAGCATTAACAGAAATTTGTAAAGAAATGGAAGAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAA
ACCCATACAATACTCCAATATTTGCTATAAAGAAAAAAGATAGTACTAAATGGAGAAAATTGGTAGATTTCAGAGAACTT
AATAAAAGAACTCAAGATTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCTGGGCTGAAGAAGAAAAAATCAGTAAC
AGTATTAGATGTGGGAGATGCATATTTTTCAGTTCCCTTAGATAAAGATTTTAGAAAGTACACAGCATTCACTATACCTA
GTGTAAATAATGAAACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATCTTT
CAGGCAAGCATGACAAAAATCTTAGAACCTTTTAGAAAACAAAATCCAGAGATGGTGATCTACCAATACATGGATGATTT
ATATGTAGGATCTGACTTAGAAATAGGGCAACATAGAGCAAAAATAGATGAGTTAAGAGAACATCTATTGAAATGGGGAT
TTACCACACCAGATAAAAAACATCAGAAAGAACCCCCATTTCTTTGGATGGGGTATGAACTCCATCCTGACAAATGGACA
GTGCAGCCTATACAATTGCCAGATAAAGATAGCTGGACTGTC
>KT339115.1:1-762 HIV-1 isolate 18389BB from Algeria reverse transcriptase (pol) gene, partial cds
CCAATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGGCCAAAGATTAAACAATGGCCATTGAC
AGAAGAGAAAATCAGAGCATTAAAAGAAATTTGTGMAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAA
ACCCATACAATACTCCAATATTTGCTATAAAGAAAAAAGATAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTT
AATAAAAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCGGGGCTGAARAAGAAAAAATCAGTAAC
AGTATTAGATGTRGGAGATGCATATTTTTCAGTTCCCTTAGATAAAGACTTTAGAAAGTACACAGCATTTACTATACCTA
GTATAAATAATGAGACACCAGGGATTAGATATCAGTACAATGTACTGCCACAGGGATGGAAAGGATCACCAGCAATCTTT
CAGGCAAGCATGACAAAAATYTTAGAGCCTTTTAGAACARAAAATCCAGAGATGGTGATCTACCAATACATGGATGATTT
ATATGTAGGATCTGAMTTAGAAATAGGGCAACATAGAGCAAAAGTAGAGGAGTTAAGAGRACATCTRTTGAAATGGGGAT
TTACCACACCAGATAAAAAACATCAGAAAGAACCCCCATTTCTTTGGATGGGGTATGAACTCCATCCTGACAAATGGACA
GTGCAGCCTATACAGCTGCCAGACAAAGATAGCTGGACTGTC
>EU743695.1:1-740 HIV-1 isolate 14205 from Algeria reverse transcriptase (pol) gene, partial cds
TACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAGATTAAACAATGGCCATTGACAGACGAGAAAATCAGAGCATTA
ACAGAAATTTGTAAAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAACCCATACAATACTCCAATATT
TGCTATAAAGAAAAAAGATAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTTT
GGGAAGTTCAATTAGGAATACCACATCCTGCTGGGCTGAAGAAGAAAAAATCAGTAACAGTATTAGATGTAGGAGATGCA
TATTTTTCAGTTCCCTTAGATAAAGACTTTAGAAAGTACACAGCATTCACTATACCTAGTGTAAATAATGAAACACCAGG
GACTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATCTTTCAGGCAAGCATGACAAAAATCT
TAGAGCCTTTTAGAACACGAAATCCAGAGATRGTGATCTACCAATACATGGATGATTTATATGTAGGATCTGACTTAGAA
ATAGGGCAACATAGAGCAAARATAGAGGAGTTAAGAGAACATCTATTGAAATGGGGATTTACCACACCAGATAAAAAACA
TCAGAAAGAACCCCCATTTCTTTGGATGGGGTATGAACTCCATCCTGACAAATGGACAGTGCAGCCTATACAACTGCCAG
ACAAAGATAGCTGGACTGTC
>EU743704.1:1-744 HIV-1 isolate 17905 from Algeria reverse transcriptase (pol) gene, partial cds
CCCATTAGTCCTATTGAAACTGTATCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAGATTAAACAATGGCCATTGAC
AGACGAGAAAATCAGAGCATTAACAGAAATTTGTAAAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAA
ACCCATACAATACTCCAATATTTGCTATAAAGAAAAAAGATAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTT
AATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCTGGGCTGAAGAAGAAAAAATCAGTAAC
AGTATTAGATGTAGGAGATGCATATTTTTCAGTTCCCTTAGATAAAGACTTTAGAAAGTACACAGCATTCACTATACCTA
GTGTAAATAATGAAACACCAGGGACTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATCTTT
CAGGCAAGCATGACAAAAATCTTAGAGCCTTTTAGAACACGAAATCCAGAGATAGTGATCTACCAATACATGGATGATTT
ATATGTAGGATCTGACTTAGAAATAGGGCAACATAGAGCAAAAATAGAGGAGTTAAGAGAACATCTATTGAAATGGGGAT
TTACCACACCAGATAAAAAACATCAGAAAGAACCCCCATTTCTTTGGATGGGGTATGAACTCCATCCTGACAAATGGACA
GTGCAGCCTATACAACTGCCAGAC
>EU743724.1:1-759 HIV-1 isolate 0506 from Algeria reverse transcriptase (pol) gene, partial cds
ATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAGRTTAAACARTGGCCATTGACAGA
AGAGAAAATCAGAGCATTAACAGAAATCTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGACAACC
CATACAATACTCCAATATTTGCTATAAAGAAAAAAGATAGTACAAAATGGAGAAAATTAGTAGATTTCAGAGAGCTTAAT
AAAAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGCTGAAGAAGAAAAAATCAGTAACAGT
ATTAGATGTGGGAGATGCATATTTTTCAGTTCCTTTAGATGAAGATTTTAGGAAGTACACAGCATTTACTATACCTAGTG
TAAATAATGAAACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATCTTTCAG
GCAAGCATGACAAAAATCTTAGAGCCTTTTAGAACAAAAAATCCAGAGATAGTGATCTACCAATACATGGATGATTTATA
TGTAGGGTCTGACTTAGAAATAGGGCAACATAGAGCAAAAATAGAAGAGTTAAGAGAGCATCTATTGAAGTGGGGATTTA
CCACACCAGATAAAAAACATCAGAAAGAACCCCCATTTCTTTGGATGGGGTATGAACTCCATCCTGACAAATGGACAGTG
CAGCCTATACAACTGCCAGACAAAGATAGCTGGACTGTC
>EU743701.1:1-762 HIV-1 isolate 16305 from Algeria reverse transcriptase (pol) gene, partial cds
CCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAGATTAAACAATGGCCATTGAC
AGACGAGAAAATCAAAGCATTAACAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAA
ACCCATACAATACTCCAATATTTGCTATAAAGAAAAAAGATAGTACTAAATGGAGAAAGTTAGTAGATTTCAGAGAACTT
AATAAAAGAACTCAAGACTTTTGGGAARTTCAATTAGGAATACCACATCCTGCAGGGCTGAAGAAGAAAAAATCAGTAAC
AGTGTTAGATGTGGGGGATGCATATTTTTCAGTTCCCTTAGATAAAGACTTTAGAAAGTAYACAGCATTCACTATACCTA
GTAGAAATAATGAAACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGMTGGAAAGGATCACCAGCAATCTTT
CAGGCAAGCATGACAAAAATCTTAGAGCCTTTTAGARCAAAAAATCCAGAGGTGGTGATCTACCAATACATGGATGATTT
ATATGTAGGATCTGACTTAGAAATAGGGCAACATAGAGCAAAAATAGAGGAATTAAGAGACCATCTATTGAAATGGGGAT
TTACTACACCAGATAAAAAGCATCAGAAAGAACCCCCATTTCTTTGGATGGGGTATGAACTCCATCCTGACAAATGGACA
GTGCAGCCTATACAACTGCCAGACAAAGATAGCTGGACTGTC
>EU743736.1:1-747 HIV-1 isolate 8706 from Algeria reverse transcriptase (pol) gene, partial cds
CCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAGATTAAACAATGGCCATTGAC
AGAAGAGAAAATCAGAGCATTAAAAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAA
ACCCATACAATACTCCAATATTTGCTATAAAGAAAAAAGATAGTACCAAATGGAGAAAATTAGTAGATTTCAGAGAACTT
AATAAAAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCTGGGCTGAAAAAGAAAAAATCAGTAAC
AGTATTAGATGTGGGAGATGCATATTTTTCAGTTCCCTTAGATAAAGACTTTAGAAAGTACACAGCATTCACTATACCTA
GTACAAATAATGAAACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATCTTT
CAGGCAAGCATGACAAAAATCTTAGAGCCTTTTAGAATAAAAAATCCAGAGATAGTGATCTACCAATACATGGATGATTT
ATATGTAGGATCTGACTTAGAAATAGAGCAACATAGAGCAAAAATAGAGGAGCTAAGAGGACATCTGYTGAAATGGGGAT
TTACCACACCAGATAAAAAGCATCAGAAAGAACCCCCATTTCTTTGGATGGGGTATGAACTCCATCCTGACAAATGGACA
GTGCAGCCTATACAACTGCCAGACAAA
>EU743729.1:1-762 HIV-1 isolate 2306 from Algeria reverse transcriptase (pol) gene, partial cds
CCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAGATTAAACAATGGCCATTGAC
AGAAGAGAAAATCAGASCATTAACAGARATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAA
ACCCATACAATACTCCAATATTTGCTATAAAGAAAAAAGATAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTT
AATAAAAGAACTCAAGACTTYTGGGAGGTTCAATTAGGAATACCACATCCTGCAGGRCTGAGGAAGAAAAAATCAGTAAC
AGTGTTAGATGTGGGAGATGCATAYTTTTCAGTTCCCTTAGATAAAGACTTTAGAAAGTACACAGCATTCACTATACCTA
GTAGAAATAATGAAACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATCTTT
CAGGCAAGCATGACAAAAATCTTAGAGCCTTTTAGAATAAAAAATCCAGAGATGGTGATCTACCAATACATGGATGATTT
ATATGTAGGATCTGACTTAGAAATAGGGCAACATAGAGCAAAAATAGAGGAGTTAAGAGAACATCTATTGAAATGGGGAT
TTACTACACCAGATAAAAAGCATCAGAAAGAACCCCCATTTCTTTGGATGGGGTATGAACTCCATCCTGACAAATGGACA
GTGCAGCCTATACAACTGCCAGAYAAGGATAGCTGGACTGTC
>KT339153.1:1-762 HIV-1 isolate 14910 from Algeria reverse transcriptase (pol) gene, partial cds
CCAATTAGTCCTATTGARACTGTACCAGTAAAATTAAAACCAGGAATGGATGGCCCAAAGATTAAACAATGGCCATTGAC
AGAAGAGRAAATCARAGCATTAACAGAAATTTGTACAGATATGGAAAAGGAAGGAAAAATTTCAAGAATTGGGCCTGAAA
ACCCATACAATACTCCAATATTTGCTATAAAGAAAAAAGATAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTT
AATAAAAGAACTCAAGACTTTTGGGAAATTCAATTAGGAATACCACATCCTGCTGGGCTRAAGAAGAAAAAATCAGTAAC
AGTGTTAGATGTGGGAGATGCATATTTTTCAGTGCCCTTAGATAAAGATTTTAGAAAGTATACAGCATTCACTATACCTA
GTACAAATAATGAAACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATCTTT
CAAGCAACCATGATAAAAATCTTAGAGCCTTTTAGAACAAAAAATCCAGAGATGGTGATCTACCAATACATGGATGATTT
ATATGTAGGATCTGACTTAGAAATAGGACAACATAGAGCAAAAATAGAGGAGTTAAGAGAGCATCTCTTGAAATGGGGAT
TTACCACACCAGATAAAAAACATCAGAAAGAACCCCCATTTCTTTGGATGGGGTATGAACTCCATCCTGACAAATGGACA
GTGCAGCCCATACAACTGCCAGACAAGGATAGCTGGACTGTC
>KT339094.1:1-762 HIV-1 isolate 18622BS from Algeria reverse transcriptase (pol) gene, partial cds
CCAATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAGATTAAACAATGGCCATTGAC
AGACGAGAAAATCAGAGCATTAACAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAA
ACCCATACAATACTCCAATATTTGCTATAAAGAAGAAAGATAGTACTAAATGGAGAAAGTTAGTAGATTTCAGAGAACTT
AATAAAAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACACCCTGCAGGGCTGAAAAAGAAAAAATCAGTAAC
AGTGTTAGATGTGGGAGATGCATATTTTTCAGTTCCCTTAGATAAAGACTTTAGAAAGTACACAGCATTCACTATACCTA
GTAGAAATAATGAAACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATCTTY
CAGGCAAGCATGACAAAAATCTTAGAGCCTTTTAGAACAAAAAATCCAGAGCTGGTGATCTACCAATACATGGATGATTT
ATATGTAGGATCTGACTTAGAAATAGGGCAACATAGAGCAAAAATAGAGGAATTAAGAGRACATCTATTGARATGGGGAT
TTACTACACCAGATAAAAAGCATCAGAAAGAACCYCCATTTCTTTGGATGGGGTATGAACTCCATCCTGACAAATGGACA
GTGCAGCCYATACAACTGCCAGACAAGGATAGCTGGACTGTC
>KT339135.1:1-762 HIV-1 isolate 16317 from Algeria reverse transcriptase (pol) gene, partial cds
CCAATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAGATTAAACAATGGCCATTGAC
AGAAGARAAAATCAAAGCATTAAYAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAA
AYCCATACAAYACCCCAATATTTGCTATAAAGAAAAAAGAYAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTT
AATAAAAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCTGGGCTGAAGAAGAARAAATCAGTAAC
AGTATTAGATGTGGGAGATGCATATTTTTCAGTTCCCTTAGATAAAGACTTTAGAAAGTACACAGCATTCACTATACCTA
GTTTAAATAATGCAACACCAGGGATTAGATATCAATAYAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATTTTT
CAGGCAAGCATGACAAAAATCTTAGAGCCTTTTAGAACAAAAAATCCAGATATAGTGATCTACCAATACATGGATGATTT
ATATGTAGGATCTGACTTAGAAATAAAGCAACATAGAGCAAAAATAGAGGAGTTRAGACAGCATCTRTTGAAATGGGGGT
TTACCACACCAGATAARAAACATCAGAAAGAACCTCCATTTCTTTGGATGGGGTATGAACTCCATCCTGACAAATGGACA
GTGCAGCCCATACAACTGCCAGACAAAGATAGCTGGACTGTC
>EU743702.1:1-735 HIV-1 isolate 17405 from Algeria reverse transcriptase (pol) gene, partial cds
CCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAATTAAACAATGGCCATTGAC
AGAAGAAAAAATCAGAGCATTAACAGAAATTTGTAAAGAAATGGAAGAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAA
ACCCATACAATACTCCAATATTTGCTATAAAGAAAAAAGATAGTACTAAATGGAGAAAATTGGTAGATTTCAGAGAACTT
AATAAAAGAACTCAAGATTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCTGGGCTGAAGAAGAAAAAATCAGTAAC
AGTATTAGATGTGGGAGATGCATATTTTTCAGTTCCCTTAGATAAAGATTTTAGAAAGTACACAGCATTCACTATACCTA
GTGTAAATAATGAAACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATCTTT
CAGGCAAGCATGACAAAAATCTTAGAACCTTTTAGAAAACAAAATCCAGAGATGGTGATCTACCAATACATGGATGATTT
ATATGTAGGATCTGACTTAGAAATAGGGCAACATAGAGCAAAAATAGAGGAGTTAAGAGAACATCTATTGAAATGGGGAT
TTACCACACCAGATAAAAAACATCAGAAAGAACCCCCATTACTTTGGATGGGGTATGAACTCCATCCTGACAAATGGACA
GTGCAGCCTATACAA
>KT339118.1:1-762 HIV-1 isolate 18366BH from Algeria reverse transcriptase (pol) gene, partial cds
CCAATTAGTCCTATTAAAACTGTACCAGTAAAATTAAAACCAGGAATGGATGGCCCAAGGATTAAACAATGGCCATTGAC
AGAAGAGAAAATCAGAGCATTAACAGAAATTTGTACAGAAATGGAAAAAGAAGGAAAAATTTCAAAAATTGGGCCTGAAA
ACCCATACAATACTCCAATATTTGCTATAAAGAAAAAAGATAGTACTAAATGGAGAAAATTAGTAGATTTTAGGGAACTT
AATAAAAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCTGGATTGAAGAAGAAAAAATCAGTAAC
AGTATTAGATGTGGGAGATGCATATTTTTCAGTTCCCCTAGATGAAGAATTTAGAAAGTATACAGCATTCACTATACCTA
GTGTGAATAATGAAACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATCTTT
CAGGCAAGCATGACAAAAATCTTAGAGCCTTTTAGAATAAAAAATCCAGAGATGGTGATTTACCAGTACATGGATGATTT
ATATGTAGGATCTGACTTAGAAATAGGGCAACATAGAGCAAAAATAGAGGAGCTAAGAGAACATCTATTGAGATGGGGAT
TTACCACACCAGATAAAAAACATCAGAAAGAACCCCCATTTCTTTGGATGGGGTATGAACTCCATCCTGACAAATGGACA
GTGCAGCCTATACAACTGCCAGACAAGGATAGCTGGACTGTC