build(deps): bump the dependabot group across 1 directory with 4 updates #548

	name: Nextflow Test

	on:
	push:
	branches:
	- main
	- master
	pull_request:

	jobs:
	build:
	uses: ./.github/workflows/build.yml

	nextflow:
	needs: build
	runs-on: ubuntu-latest
	steps:
	- name: Download Funnel
	uses: actions/download-artifact@v4
	with:
	name: funnel

	- name: Start Funnel
	run: \|
	chmod +x ./funnel
	./funnel server --LocalStorage.AllowedDirs $HOME run &

	- name: Install Nextflow
	run: \|
	echo "Installing Nextflow: https://www.nextflow.io/docs/latest/install.html"

	# Install Java 17
	curl -s https://get.sdkman.io \| bash
	source "/home/runner/.sdkman/bin/sdkman-init.sh"
	sdk install java 17.0.10-tem
	java -version

	# Install Nextflow
	curl -s https://get.nextflow.io \| bash
	chmod +x nextflow
	mkdir -p $HOME/.local/bin/
	mv nextflow $HOME/.local/bin/

	# Ensure Nextflow is in PATH
	export PATH=$HOME/.local/bin:$PATH
	echo "PATH=$HOME/.local/bin:$PATH" >> $GITHUB_ENV

	nextflow info

	- name: Install nf-canary and GA4GH-TES plugin
	run: \|
	git clone https://github.com/seqeralabs/nf-canary
	cd nf-canary
	cat <<EOF >> nextflow.config
	plugins {
	id 'nf-ga4gh'
	}
	process.executor = 'tes'
	tes.endpoint = 'http://localhost:8000'
	EOF

	- name: Run nf-canary tests
	run: \|
	nextflow run nf-canary/main.nf

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