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b/src/dendrograms/nomenclature_table_CCN202002013.csv index 9c84c3ac..85e8342f 100644 --- a/src/dendrograms/nomenclature_table_CCN202002013.csv +++ b/src/dendrograms/nomenclature_table_CCN202002013.csv @@ -1,262 +1,258 @@ -"cell_set_preferred_alias","original_label","cell_set_label","cell_set_accession","cell_set_aligned_alias","cell_set_additional_alias","cell_set_alias_assignee","cell_set_alias_citation","cell_set_structure","cell_set_ontology_tag","taxonomy_id","species","modality","child_cell_set_accessions" -"Lamp5 Pax6","Lamp5 Pax6","RNAseq 001","CS202002013_1","","Lamp5_4","Zizhen Yao|Nikolas Jorstad","10.1101/2020.02.29.970558|10.1101/2020.03.31.016972","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Lamp5 Egln3_1","Lamp5 Egln3_1","RNAseq 002","CS202002013_2","","Sncg_4|Alpha7 cell","Zizhen Yao|Nikolas Jorstad|Federico Scala","10.1101/2020.02.29.970558|10.1101/2020.03.31.016972|10.1101/2020.02.03.929158","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Lamp5 Egln3_2","Lamp5 Egln3_2","RNAseq 003","CS202002013_3","","Canopy cell","Zizhen Yao|Federico Scala","10.1101/2020.02.29.970558|10.1101/2020.02.03.929158","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Lamp5 Egln3_3","Lamp5 Egln3_3","RNAseq 004","CS202002013_4","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Lamp5 Pdlim5_1","Lamp5 Pdlim5_1","RNAseq 005","CS202002013_5","","Lamp5_1","Zizhen Yao|Nikolas Jorstad","10.1101/2020.02.29.970558|10.1101/2020.03.31.016972","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Lamp5 Pdlim5_2","Lamp5 Pdlim5_2","RNAseq 006","CS202002013_6","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Lamp5 Slc35d3","Lamp5 Slc35d3","RNAseq 007","CS202002013_7","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Lamp5 Lhx6","Lamp5 Lhx6","RNAseq 008","CS202002013_8","Lamp5 Lhx6","Lamp5_3|L5/6 neurogliaform cell","Zizhen Yao||Nikolas Jorstad|Federico Scala","10.1101/2020.02.29.970558||10.1101/2020.03.31.016972|10.1101/2020.02.03.929158","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Sncg Col14a1","Sncg Col14a1","RNAseq 009","CS202002013_9","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Sncg Slc17a8","Sncg Slc17a8","RNAseq 010","CS202002013_10","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Sncg Calb1_1","Sncg Calb1_1","RNAseq 011","CS202002013_11","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Sncg Calb1_2","Sncg Calb1_2","RNAseq 012","CS202002013_12","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Sncg Npy2r","Sncg Npy2r","RNAseq 013","CS202002013_13","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Vip Sncg","Vip Sncg","RNAseq 014","CS202002013_14","","Small CCK basket cell","Zizhen Yao|Federico Scala","10.1101/2020.02.29.970558|10.1101/2020.02.03.929158","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Vip Serpinf1_1","Vip Serpinf1_1","RNAseq 015","CS202002013_15","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Vip Serpinf1_2","Vip Serpinf1_2","RNAseq 016","CS202002013_16","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Vip Serpinf1_3","Vip Serpinf1_3","RNAseq 017","CS202002013_17","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Vip Htr1f","Vip Htr1f","RNAseq 018","CS202002013_18","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Vip Gpc3","Vip Gpc3","RNAseq 019","CS202002013_19","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Vip C1ql1","Vip C1ql1","RNAseq 020","CS202002013_20","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Vip Mybpc1_2","Vip Mybpc1_2","RNAseq 021","CS202002013_21","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Vip Mybpc1_1","Vip Mybpc1_1","RNAseq 022","CS202002013_22","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Vip Chat_1","Vip Chat_1","RNAseq 023","CS202002013_23","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Vip Mybpc1_3","Vip Mybpc1_3","RNAseq 024","CS202002013_24","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Vip Chat_2","Vip Chat_2","RNAseq 025","CS202002013_25","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Vip Igfbp6_1","Vip Igfbp6_1","RNAseq 026","CS202002013_26","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Vip Igfbp6_2","Vip Igfbp6_2","RNAseq 027","CS202002013_27","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Sst Chodl","Sst Chodl","RNAseq 028","CS202002013_28","Sst Chodl","Sst Chodl|Long-projecting SST cell","Zizhen Yao||Nikolas Jorstad|Federico Scala","10.1101/2020.02.29.970558||10.1101/2020.03.31.016972|10.1101/2020.02.03.929158","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Sst Penk","Sst Penk","RNAseq 029","CS202002013_29","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Sst Myh8_1","Sst Myh8_1","RNAseq 030","CS202002013_30","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Sst Myh8_2","Sst Myh8_2","RNAseq 031","CS202002013_31","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Sst Myh8_3","Sst Myh8_3","RNAseq 032","CS202002013_32","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Sst Htr1a","Sst Htr1a","RNAseq 033","CS202002013_33","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Sst Etv1","Sst Etv1","RNAseq 034","CS202002013_34","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Sst Pvalb Etv1","Sst Pvalb Etv1","RNAseq 035","CS202002013_35","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Sst Crhr2_1","Sst Crhr2_1","RNAseq 036","CS202002013_36","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Sst Crhr2_2","Sst Crhr2_2","RNAseq 037","CS202002013_37","","Sst_4","Zizhen Yao|Nikolas Jorstad","10.1101/2020.02.29.970558|10.1101/2020.03.31.016972","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Sst Hpse","Sst Hpse","RNAseq 038","CS202002013_38","","L4 SST cell","Zizhen Yao|Federico Scala","10.1101/2020.02.29.970558|10.1101/2020.02.03.929158","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Sst Calb2","Sst Calb2","RNAseq 039","CS202002013_39","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Sst Pappa","Sst Pappa","RNAseq 040","CS202002013_40","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Sst Pvalb Calb2","Sst Pvalb Calb2","RNAseq 041","CS202002013_41","","L2/3 PV-like cell","Zizhen Yao|Federico Scala","10.1101/2020.02.29.970558|10.1101/2020.02.03.929158","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Sst C1ql3_1","Sst C1ql3_1","RNAseq 042","CS202002013_42","","Sst_5","Zizhen Yao|Nikolas Jorstad","10.1101/2020.02.29.970558|10.1101/2020.03.31.016972","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Sst C1ql3_2","Sst C1ql3_2","RNAseq 043","CS202002013_43","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Sst Tac2","Sst Tac2","RNAseq 044","CS202002013_44","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Sst Th_1","Sst Th_1","RNAseq 045","CS202002013_45","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Sst Th_2","Sst Th_2","RNAseq 046","CS202002013_46","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Sst Th_3","Sst Th_3","RNAseq 047","CS202002013_47","","Sst_7","Zizhen Yao|Nikolas Jorstad","10.1101/2020.02.29.970558|10.1101/2020.03.31.016972","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Pvalb Gabrg1","Pvalb Gabrg1","RNAseq 048","CS202002013_48","","L6 FS cell w/ large sag","Zizhen Yao|Federico Scala","10.1101/2020.02.29.970558|10.1101/2020.02.03.929158","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Pvalb Egfem1","Pvalb Egfem1","RNAseq 049","CS202002013_49","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Pvalb Gpr149","Pvalb Gpr149","RNAseq 050","CS202002013_50","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Pvalb Kank4","Pvalb Kank4","RNAseq 051","CS202002013_51","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Pvalb Calb1_1","Pvalb Calb1_1","RNAseq 052","CS202002013_52","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Pvalb Calb1_2","Pvalb Calb1_2","RNAseq 053","CS202002013_53","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Pvalb Reln","Pvalb Reln","RNAseq 054","CS202002013_54","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Pvalb Il1rapl2","Pvalb Il1rapl2","RNAseq 055","CS202002013_55","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Pvalb Vipr2_1","Pvalb Vipr2_1","RNAseq 056","CS202002013_56","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Pvalb Vipr2_2","Pvalb Vipr2_2","RNAseq 057","CS202002013_57","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"L2/3 IT_1","L2/3 IT_1","RNAseq 058","CS202002013_58","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"L2/3 IT_2","L2/3 IT_2","RNAseq 059","CS202002013_59","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"L2/3 IT_3","L2/3 IT_3","RNAseq 060","CS202002013_60","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"L4/5 IT_1","L4/5 IT_1","RNAseq 061","CS202002013_61","","L4 IT","Zizhen Yao|Nikolas Jorstad","10.1101/2020.02.29.970558|10.1101/2020.03.31.016972","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"L4/5 IT_2","L4/5 IT_2","RNAseq 062","CS202002013_62","","L4/5 IT","Zizhen Yao|Nikolas Jorstad","10.1101/2020.02.29.970558|10.1101/2020.03.31.016972","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"L5 IT_1","L5 IT_1","RNAseq 063","CS202002013_63","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"L5 IT_2","L5 IT_2","RNAseq 064","CS202002013_64","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"L5 IT_3","L5 IT_3","RNAseq 065","CS202002013_65","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"L5 IT_4","L5 IT_4","RNAseq 066","CS202002013_66","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"L6 IT_1","L6 IT_1","RNAseq 067","CS202002013_67","","L6 IT_1","Zizhen Yao|Nikolas Jorstad","10.1101/2020.02.29.970558|10.1101/2020.03.31.016972","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"L6 IT_2","L6 IT_2","RNAseq 068","CS202002013_68","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"L6 IT Car3","L6 IT Car3","RNAseq 069","CS202002013_69","L6 IT Car3","L6 IT_3|Claustrum-like IT","Zizhen Yao||Nikolas Jorstad|Federico Scala","10.1101/2020.02.29.970558||10.1101/2020.03.31.016972|10.1101/2020.02.03.929158","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"L5 PT_1","L5 ET_1","RNAseq 070","CS202002013_70","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"L5 PT_2","L5 ET_2","RNAseq 071","CS202002013_71","","L5 ET_2","Zizhen Yao|Nikolas Jorstad","10.1101/2020.02.29.970558|10.1101/2020.03.31.016972","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"L5 PT_3","L5 ET_3","RNAseq 072","CS202002013_72","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"L5 PT_4","L5 ET_4","RNAseq 073","CS202002013_73","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"L5/6 NP CT","L5/6 NP CT","RNAseq 074","CS202002013_74","","L5 IT_3","Zizhen Yao|Nikolas Jorstad","10.1101/2020.02.29.970558|10.1101/2020.03.31.016972","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"L6 CT Gpr139","L6 CT Gpr139","RNAseq 075","CS202002013_75","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"L6 CT Cpa6","L6 CT Cpa6","RNAseq 076","CS202002013_76","","L6 CT_2","Zizhen Yao|Nikolas Jorstad","10.1101/2020.02.29.970558|10.1101/2020.03.31.016972","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"L6 CT Grp","L6 CT Grp","RNAseq 077","CS202002013_77","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"L6 CT Pou3f2","L6 CT Pou3f2","RNAseq 078","CS202002013_78","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"L6 CT Kit_1","L6 CT Kit_1","RNAseq 079","CS202002013_79","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"L6 CT Kit_2","L6 CT Kit_2","RNAseq 080","CS202002013_80","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"L6b Col6a1","L6b Col6a1","RNAseq 081","CS202002013_81","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"L6b Shisa6_1","L6b Shisa6_1","RNAseq 082","CS202002013_82","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"L6b Shisa6_2","L6b Shisa6_2","RNAseq 083","CS202002013_83","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"L6b Ror1","L6b Ror1","RNAseq 084","CS202002013_84","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"L6b Kcnip1","L6b Kcnip1","RNAseq 085","CS202002013_85","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"L5/6 NP_1","L5/6 NP_1","RNAseq 086","CS202002013_86","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"L5/6 NP_2","L5/6 NP_2","RNAseq 087","CS202002013_87","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"L5/6 NP_3","L5/6 NP_3","RNAseq 088","CS202002013_88","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Meis2","Meis2","RNAseq 089","CS202002013_89","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Meis2_Top2a","Meis2_Top2a","RNAseq 090","CS202002013_90","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"OPC Pdgfra","OPC Pdgfra","RNAseq 091","CS202002013_91","OPC","OPC","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Astro_Top2a","Astro_Top2a","RNAseq 092","CS202002013_92","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Astro Aqp4_Gfap","Astro Aqp4_Gfap","RNAseq 093","CS202002013_93","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Astro Aqp4_Slc7a10","Astro Aqp4_Slc7a10","RNAseq 094","CS202002013_94","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Oligo Enpp6_1","Oligo Enpp6_1","RNAseq 095","CS202002013_95","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Oligo Enpp6_2","Oligo Enpp6_2","RNAseq 096","CS202002013_96","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Oligo Enpp6_3","Oligo Enpp6_3","RNAseq 097","CS202002013_97","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Oligo Enpp6_4","Oligo Enpp6_4","RNAseq 098","CS202002013_98","","","Zizhen Yao","10.1101/2020.02.29.970558","primary motor cortex","UBERON:0001384","CCN202002013","Mouse","RNAseq","" -"Oligo Opalin_1","Oligo Opalin_1","RNAseq 099","CS202002013_99","","Oligo_1","Zizhen Yao|Nikolas 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Egfem1,Pvalb Egfem1,RNAseq 049,CS202002013_49,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, +Pvalb Gpr149,Pvalb Gpr149,RNAseq 050,CS202002013_50,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, +Pvalb Kank4,Pvalb Kank4,RNAseq 051,CS202002013_51,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, +Pvalb Calb1_1,Pvalb Calb1_1,RNAseq 052,CS202002013_52,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, +Pvalb Calb1_2,Pvalb Calb1_2,RNAseq 053,CS202002013_53,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, +Pvalb Reln,Pvalb Reln,RNAseq 054,CS202002013_54,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, +Pvalb Il1rapl2,Pvalb Il1rapl2,RNAseq 055,CS202002013_55,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, +Pvalb Vipr2_1,Pvalb Vipr2_1,RNAseq 056,CS202002013_56,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, +Pvalb Vipr2_2,Pvalb Vipr2_2,RNAseq 057,CS202002013_57,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, +L2/3 IT_1,L2/3 IT_1,RNAseq 058,CS202002013_58,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, +L2/3 IT_2,L2/3 IT_2,RNAseq 059,CS202002013_59,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, +L2/3 IT_3,L2/3 IT_3,RNAseq 060,CS202002013_60,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, +L4/5 IT_1,L4/5 IT_1,RNAseq 061,CS202002013_61,,L4 IT,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor 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Scala,10.1101/2020.02.29.970558||10.1101/2020.03.31.016972|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85 +,n88,RNAseq 081-084,CS202002013_204,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84 +,n89,RNAseq 082-084,CS202002013_205,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_82|CS202002013_83|CS202002013_84 +,n90,RNAseq 082-083,CS202002013_206,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_82|CS202002013_83 +L5/6 NP,n91,RNAseq 086-088,CS202002013_207,L5/6 NP,L5/6 NP|Near-projecting,Zizhen Yao||Nikolas Jorstad|Federico Scala,10.1101/2020.02.29.970558||10.1101/2020.03.31.016972|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_86|CS202002013_87|CS202002013_88 +,n92,RNAseq 086-087,CS202002013_208,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_86|CS202002013_87 +Meis2,n93,RNAseq 089-090,CS202002013_209,Meis2,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_89|CS202002013_90 +Astro,n94,RNAseq 092-094,CS202002013_210,Astrocyte,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_92|CS202002013_93|CS202002013_94 +Astro_C1,n95,RNAseq 093-094,CS202002013_211,,Astro_1,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_93|CS202002013_94 +Oligo,n96,RNAseq 095-102,CS202002013_212,Oligodendrocyte,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_95|CS202002013_96|CS202002013_97|CS202002013_98|CS202002013_99|CS202002013_100|CS202002013_101|CS202002013_102 +,n97,RNAseq 095-098,CS202002013_213,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_95|CS202002013_96|CS202002013_97|CS202002013_98 +,n98,RNAseq 095-096,CS202002013_214,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_95|CS202002013_96 +,n99,RNAseq 097-098,CS202002013_215,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_97|CS202002013_98 +,n100,RNAseq 099-102,CS202002013_216,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_99|CS202002013_100|CS202002013_101|CS202002013_102 +,n101,RNAseq 099-100,CS202002013_217,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_99|CS202002013_100 +,n102,RNAseq 101-102,CS202002013_218,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_101|CS202002013_102 +Non-neural,n103,RNAseq 103-116,CS202002013_219,Non-neural,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_103|CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_108|CS202002013_109|CS202002013_110|CS202002013_111|CS202002013_112|CS202002013_113|CS202002013_114|CS202002013_115|CS202002013_116 +,n104,RNAseq 103-112,CS202002013_220,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_103|CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_108|CS202002013_109|CS202002013_110|CS202002013_111|CS202002013_112 +,n105,RNAseq 104-112,CS202002013_221,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_108|CS202002013_109|CS202002013_110|CS202002013_111|CS202002013_112 +VLMC,n106,RNAseq 104-110,CS202002013_222,VLMC,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_108|CS202002013_109|CS202002013_110 +,n107,RNAseq 104-107,CS202002013_223,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107 +,n108,RNAseq 104-105,CS202002013_224,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_104|CS202002013_105 +,n109,RNAseq 106-107,CS202002013_225,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_106|CS202002013_107 +,n110,RNAseq 108-110,CS202002013_226,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_108|CS202002013_109|CS202002013_110 +,n111,RNAseq 108-109,CS202002013_227,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_108|CS202002013_109 +,n112,RNAseq 111-112,CS202002013_228,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_111|CS202002013_112 +Micro-PVM,n113,RNAseq 113-116,CS202002013_229,Microglia-PVM,Microglia/PVM,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_113|CS202002013_114|CS202002013_115|CS202002013_116 +,n114,RNAseq 113-115,CS202002013_230,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_113|CS202002013_114|CS202002013_115 +,n115,RNAseq 114-115,CS202002013_231,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_114|CS202002013_115 +Sst,,RNAseq 028-047,CS202002013_232,Sst,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_28|CS202002013_29|CS202002013_30|CS202002013_31|CS202002013_32|CS202002013_33|CS202002013_34|CS202002013_35|CS202002013_36|CS202002013_37|CS202002013_38|CS202002013_39|CS202002013_40|CS202002013_41|CS202002013_42|CS202002013_43|CS202002013_44|CS202002013_45|CS202002013_46|CS202002013_47 +Pvalb,,RNAseq 048-057,CS202002013_233,Pvalb,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_48|CS202002013_49|CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53|CS202002013_54|CS202002013_55|CS202002013_56|CS202002013_57 +Non-IT projecting,,RNAseq 070-088,CS202002013_234,Non-IT projecting,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_70|CS202002013_71|CS202002013_72|CS202002013_73|CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80|CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85|CS202002013_86|CS202002013_87|CS202002013_88 +Non-Neuronal,,RNAseq 091-102,CS202002013_235,Non-neuronal,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_91|CS202002013_92|CS202002013_93|CS202002013_94|CS202002013_95|CS202002013_96|CS202002013_97|CS202002013_98|CS202002013_99|CS202002013_100|CS202002013_101|CS202002013_102|CS202002013_103|CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_108|CS202002013_109|CS202002013_110|CS202002013_111|CS202002013_112|CS202002013_113|CS202002013_114|CS202002013_115|CS202002013_116 +Oligo-OPC,,"RNAseq 091,095-102",CS202002013_236,Oligodendrocyte-OPC,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_91|CS202002013_95|CS202002013_96|CS202002013_97|CS202002013_98|CS202002013_99|CS202002013_100|CS202002013_101|CS202002013_102 +PVM,,RNAseq 114-116,CS202002013_237,PVM,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_114|CS202002013_115|CS202002013_116 +Lamp5_C2,,RNAseq 006-007,CS202002013_239,,Lamp5_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_6|CS202002013_7 +Sncg_C3,,RNAseq 011-013,CS202002013_240,,Sncg_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_11|CS202002013_12|CS202002013_13 +Sncg_C1,,"RNAseq 014, 016",CS202002013_241,,Sncg_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_14|CS202002013_16 +Vip_C3,,"RNAseq 015, 019, 022",CS202002013_242,,Vip_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_15|CS202002013_19|CS202002013_22 +Vip_C2,,"RNAseq 017-018, 020-021",CS202002013_243,,Vip_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_17|CS202002013_18|CS202002013_20|CS202002013_21 +Vip_C1,,RNAseq 023-025,CS202002013_244,,Vip_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_23|CS202002013_24|CS202002013_25 +Sst_C2,,"RNAseq 029-030, 034",CS202002013_245,,Sst_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_29|CS202002013_30|CS202002013_34 +Sst_C3,,"RNAseq 035-036, 038-041",CS202002013_246,,Sst_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_35|CS202002013_36|CS202002013_38|CS202002013_39|CS202002013_40|CS202002013_41 +Sst_C6,,RNAseq 043-045,CS202002013_247,,Sst_6,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_43|CS202002013_44|CS202002013_45 +Pvalb_C1,,"RNAseq 046, 050-055",CS202002013_248,,Pvalb_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_46|CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53|CS202002013_54|CS202002013_55 +Pvalb_C2,,RNAseq 048-049,CS202002013_249,,Pvalb_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_48|CS202002013_49 +L5 IT_C1,,"RNAseq 061-062, 065",CS202002013_250,,L5 IT_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_61|CS202002013_62|CS202002013_65 +L6 IT_C2,,"RNAseq 066, 068",CS202002013_251,,L6 IT_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_66|CS202002013_68 +L5 ET_C1,,"RNAseq 070, 072-073",CS202002013_252,,L5 ET_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_70|CS202002013_72|CS202002013_73 +L6 CT_C1,,"RNAseq 075, 077-081",CS202002013_253,,L6 CT_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_75|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80|CS202002013_81 +Oligo_C2,,"RNAseq 098, 110-112",CS202002013_254,,Oligo_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_98|CS202002013_110|CS202002013_111|CS202002013_112 +VLMC(i),,"RNAseq 104-107, 110",CS202002013_255,,VLMC(i),Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_110 +Large CCK basket cell,,RNAseq 009-012,CS202002013_256,,Large CCK basket cell,Federico Scala,10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_9|CS202002013_10|CS202002013_11|CS202002013_12 +L5 T Martinotti cell,,RNAseq 030-032,CS202002013_258,,L5 T Martinotti cell,Federico Scala,10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_30|CS202002013_31|CS202002013_32 +Lower FS Basket cell,,RNAseq 049-053,CS202002013_259,,Lower FS Basket cell,Federico Scala,10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, \ No newline at end of file From 3b4bd3602853a9ae676e584be60baf3960c684ea Mon Sep 17 00:00:00 2001 From: Shawn Tan <76212760+shawntanzk@users.noreply.github.com> Date: Mon, 19 Jul 2021 08:20:05 +0100 Subject: [PATCH 02/17] Added nomeclature_table csv for other taxonomies Currently still missing child_cell_set_accessions column --- .../nomenclature_table_CCN201912131.csv | 180 ++++++++++++++++++ .../nomenclature_table_CCN201912132.csv | 135 +++++++++++++ .../nomenclature_table_CCN202002011.csv | 110 +++++++++++ .../nomenclature_table_CCN202002012.csv | 107 +++++++++++ .../nomenclature_table_CCN202002270.csv | 66 +++++++ .../nomenclature_table_CCN202002271.csv | 66 +++++++ .../nomenclature_table_CCN202002272.csv | 66 +++++++ .../nomenclature_table_CCN202002273.csv | 66 +++++++ .../nomenclature_table_CCN202002274.csv | 66 +++++++ .../nomenclature_table_CCN202002275.csv | 66 +++++++ .../nomenclature_table_CCN202002276.csv | 66 +++++++ .../nomenclature_table_CCN202002277.csv | 66 +++++++ .../nomenclature_table_CCN202103210.csv | 126 ++++++++++++ .../nomenclature_table_CCN202103220.csv | 66 +++++++ 14 files changed, 1252 insertions(+) create mode 100644 src/dendrograms/nomenclature_table_CCN201912131.csv create mode 100644 src/dendrograms/nomenclature_table_CCN201912132.csv create mode 100644 src/dendrograms/nomenclature_table_CCN202002011.csv create mode 100644 src/dendrograms/nomenclature_table_CCN202002012.csv create mode 100644 src/dendrograms/nomenclature_table_CCN202002270.csv create mode 100644 src/dendrograms/nomenclature_table_CCN202002271.csv create mode 100644 src/dendrograms/nomenclature_table_CCN202002272.csv create mode 100644 src/dendrograms/nomenclature_table_CCN202002273.csv create mode 100644 src/dendrograms/nomenclature_table_CCN202002274.csv create mode 100644 src/dendrograms/nomenclature_table_CCN202002275.csv create mode 100644 src/dendrograms/nomenclature_table_CCN202002276.csv create mode 100644 src/dendrograms/nomenclature_table_CCN202002277.csv create mode 100644 src/dendrograms/nomenclature_table_CCN202103210.csv create mode 100644 src/dendrograms/nomenclature_table_CCN202103220.csv diff --git a/src/dendrograms/nomenclature_table_CCN201912131.csv b/src/dendrograms/nomenclature_table_CCN201912131.csv new file mode 100644 index 00000000..bc6a38ab --- /dev/null +++ b/src/dendrograms/nomenclature_table_CCN201912131.csv @@ -0,0 +1,180 @@ +cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions +Inh L1 LAMP5 PVRL2,Inh L1 LAMP5 PVRL2,RNAseq 001,CS201912131_1,,Lamp5_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L1 LAMP5 RAB11FIP1,Inh L1 LAMP5 RAB11FIP1,RNAseq 002,CS201912131_2,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L1-6 LAMP5 AARD,Inh L1-6 LAMP5 AARD,RNAseq 003,CS201912131_3,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L1-6 LAMP5 NES,Inh L1-6 LAMP5 NES,RNAseq 004,CS201912131_4,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L1-6 LAMP5 CA1,Inh L1-6 LAMP5 CA1,RNAseq 005,CS201912131_5,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L5-6 LAMP5 CRABP1,Inh L5-6 LAMP5 CRABP1,RNAseq 006,CS201912131_6,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L3-6 PAX6 LINC01497,Inh L3-6 PAX6 LINC01497,RNAseq 007,CS201912131_7,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L1 PAX6 MIR101-1,Inh L1 PAX6 MIR101-1,RNAseq 008,CS201912131_8,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L1 PAX6 CHRFAM7A,Inh L1 PAX6 CHRFAM7A,RNAseq 009,CS201912131_9,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L1-6 VIP SLC7A6OS,Inh L1-6 VIP SLC7A6OS,RNAseq 010,CS201912131_10,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L2 PAX6 FREM2,Inh L2 PAX6 FREM2,RNAseq 011,CS201912131_11,,Sncg_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L1-2 VIP HTR3A,Inh L1-2 VIP HTR3A,RNAseq 012,CS201912131_12,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L1-2 VIP WNT4,Inh L1-2 VIP WNT4,RNAseq 013,CS201912131_13,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L1 LAMP5 BMP2,Inh L1 LAMP5 BMP2,RNAseq 014,CS201912131_14,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L1 LAMP5 NMBR,Inh L1 LAMP5 NMBR,RNAseq 015,CS201912131_15,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L1 PVALB SST ASIC4,Inh L1 PVALB SST ASIC4,RNAseq 016,CS201912131_16,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L1 SST P4HA3,Inh L1 SST P4HA3,RNAseq 017,CS201912131_17,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L1 SST DEFB108B,Inh L1 SST DEFB108B,RNAseq 018,CS201912131_18,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L1-3 VIP CBLN1,Inh L1-3 VIP CBLN1,RNAseq 019,CS201912131_19,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L1-2 VIP EXPH5,Inh L1-2 VIP EXPH5,RNAseq 020,CS201912131_20,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L1-3 VIP HSPB6,Inh L1-3 VIP HSPB6,RNAseq 021,CS201912131_21,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L1-2 VIP PTGER3,Inh L1-2 VIP PTGER3,RNAseq 022,CS201912131_22,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L1-2 VIP SCML4,Inh L1-2 VIP SCML4,RNAseq 023,CS201912131_23,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L1-3 VIP FNDC1,Inh L1-3 VIP FNDC1,RNAseq 024,CS201912131_24,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L1-3 VIP CHRNA2,Inh L1-3 VIP CHRNA2,RNAseq 025,CS201912131_25,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L2 VIP SLC6A16,Inh L2 VIP SLC6A16,RNAseq 026,CS201912131_26,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L1 VIP KLHDC8B,Inh L1 VIP KLHDC8B,RNAseq 027,CS201912131_27,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L3-5 VIP IGDCC3,Inh L3-5 VIP IGDCC3,RNAseq 028,CS201912131_28,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L1-5 VIP SMOC1,Inh L1-5 VIP SMOC1,RNAseq 029,CS201912131_29,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L3-5 VIP HS3ST3A1,Inh L3-5 VIP HS3ST3A1,RNAseq 030,CS201912131_30,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L5-6 VIP COL4A3,Inh L5-6 VIP COL4A3,RNAseq 031,CS201912131_31,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L1-5 VIP CD27-AS1,Inh L1-5 VIP CD27-AS1,RNAseq 032,CS201912131_32,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L2-5 VIP BSPRY,Inh L2-5 VIP BSPRY,RNAseq 033,CS201912131_33,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L2-5 VIP SOX11,Inh L2-5 VIP SOX11,RNAseq 034,CS201912131_34,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L3-6 VIP ZIM2-AS1,Inh L3-6 VIP ZIM2-AS1,RNAseq 035,CS201912131_35,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L1-5 VIP PHLDB3,Inh L1-5 VIP PHLDB3,RNAseq 036,CS201912131_36,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L1-5 VIP LINC01013,Inh L1-5 VIP LINC01013,RNAseq 037,CS201912131_37,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L3-6 VIP UG0898H09,Inh L3-6 VIP UG0898H09,RNAseq 038,CS201912131_38,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L3-5 VIP TAC3,Inh L3-5 VIP TAC3,RNAseq 039,CS201912131_39,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L1-6 SST NPY,Inh L1-6 SST NPY,RNAseq 040,CS201912131_40,Sst Chodl,Sst Chodl,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L3-5 SST CDH3,Inh L3-5 SST CDH3,RNAseq 041,CS201912131_41,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L5 SST RPL35AP11,Inh L5 SST RPL35AP11,RNAseq 042,CS201912131_42,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L5-6 SST ISX,Inh L5-6 SST ISX,RNAseq 043,CS201912131_43,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L5-6 PVALB SST CRHR2,Inh L5-6 PVALB SST CRHR2,RNAseq 044,CS201912131_44,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L3-5 SST OR5AH1P,Inh L3-5 SST OR5AH1P,RNAseq 045,CS201912131_45,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L3-5 SST GGTLC3,Inh L3-5 SST GGTLC3,RNAseq 046,CS201912131_46,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L2-3 SST NMU,Inh L2-3 SST NMU,RNAseq 047,CS201912131_47,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L5-6 SST PAWR,Inh L5-6 SST PAWR,RNAseq 048,CS201912131_48,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L5-6 SST PIK3CD,Inh L5-6 SST PIK3CD,RNAseq 049,CS201912131_49,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L1-2 SST CCNJL,Inh L1-2 SST CCNJL,RNAseq 050,CS201912131_50,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L1-3 SST FAM20A,Inh L1-3 SST FAM20A,RNAseq 051,CS201912131_51,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L1-2 SST PRRT4,Inh L1-2 SST PRRT4,RNAseq 052,CS201912131_52,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L5-6 SST BEAN1,Inh L5-6 SST BEAN1,RNAseq 053,CS201912131_53,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L5-6 SST DNAJC14,Inh L5-6 SST DNAJC14,RNAseq 054,CS201912131_54,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L5-6 SST C4orf26,Inh L5-6 SST C4orf26,RNAseq 055,CS201912131_55,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L5-6 SST FBN2,Inh L5-6 SST FBN2,RNAseq 056,CS201912131_56,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L5-6 SST KLHL1,Inh L5-6 SST KLHL1,RNAseq 057,CS201912131_57,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L6 SST TH,Inh L6 SST TH,RNAseq 058,CS201912131_58,,Sst_7,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L5-6 PVALB KCNIP2,Inh L5-6 PVALB KCNIP2,RNAseq 059,CS201912131_59,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L5-6 PVALB ZFPM2-AS1,Inh L5-6 PVALB ZFPM2-AS1,RNAseq 060,CS201912131_60,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L3-5 PVALB ISG20,Inh L3-5 PVALB ISG20,RNAseq 061,CS201912131_61,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L5 PVALB LRIG3,Inh L5 PVALB LRIG3,RNAseq 062,CS201912131_62,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L2-5 PVALB HHIPL1,Inh L2-5 PVALB HHIPL1,RNAseq 063,CS201912131_63,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L2-5 PVALB RPH3AL,Inh L2-5 PVALB RPH3AL,RNAseq 064,CS201912131_64,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L3 PVALB SAMD13,Inh L3 PVALB SAMD13,RNAseq 065,CS201912131_65,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L1-2 PVALB CDK20,Inh L1-2 PVALB CDK20,RNAseq 066,CS201912131_66,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L2 PVALB FRZB,Inh L2 PVALB FRZB,RNAseq 067,CS201912131_67,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L1-2 SST CLIC6,Inh L1-2 SST CLIC6,RNAseq 068,CS201912131_68,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L5-6 PVALB GAPDHP60,Inh L5-6 PVALB GAPDHP60,RNAseq 069,CS201912131_69,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L5-6 PVALB FAM150B,Inh L5-6 PVALB FAM150B,RNAseq 070,CS201912131_70,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L5-6 PVALB MEPE,Inh L5-6 PVALB MEPE,RNAseq 071,CS201912131_71,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Inh L1-6 PVALB COL15A1,Inh L1-6 PVALB COL15A1,RNAseq 072,CS201912131_72,Chandelier,Chandelier cell,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L2 LAMP5 KCNG3,Exc L2 LAMP5 KCNG3,RNAseq 073,CS201912131_73,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L2 LINC00507 ATP7B,Exc L2 LINC00507 ATP7B,RNAseq 074,CS201912131_74,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L2 LINC00507 GLRA3,Exc L2 LINC00507 GLRA3,RNAseq 075,CS201912131_75,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L2-3 RORB RTKN2,Exc L2-3 RORB RTKN2,RNAseq 076,CS201912131_76,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L2-3 LINC00507 DSG3,Exc L2-3 LINC00507 DSG3,RNAseq 077,CS201912131_77,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L3 LAMP5 CARM1P1,Exc L3 LAMP5 CARM1P1,RNAseq 078,CS201912131_78,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Oligo L2-6 OPALIN MAP6D1,Oligo L2-6 OPALIN MAP6D1,RNAseq 117,CS201912131_79,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L2-3 RORB CCDC68,Exc L2-3 RORB CCDC68,RNAseq 079,CS201912131_80,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L2-3 RORB PTPN3,Exc L2-3 RORB PTPN3,RNAseq 080,CS201912131_81,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L3 THEMIS ENPEP,Exc L3 THEMIS ENPEP,RNAseq 081,CS201912131_82,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L3-5 RORB TNNT2,Exc L3-5 RORB TNNT2,RNAseq 082,CS201912131_83,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L3-5 RORB LAMA4,Exc L3-5 RORB LAMA4,RNAseq 083,CS201912131_84,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L5 THEMIS VILL,Exc L5 THEMIS VILL,RNAseq 084,CS201912131_85,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L3 RORB OTOGL,Exc L3 RORB OTOGL,RNAseq 085,CS201912131_86,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L3-5 RORB LINC01202,Exc L3-5 RORB LINC01202,RNAseq 086,CS201912131_87,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L5 THEMIS SLC22A18,Exc L5 THEMIS SLC22A18,RNAseq 087,CS201912131_88,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L5-6 THEMIS TNFAIP6,Exc L5-6 THEMIS TNFAIP6,RNAseq 088,CS201912131_89,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L3-5 RORB LNX2,Exc L3-5 RORB LNX2,RNAseq 089,CS201912131_90,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L3-5 RORB RPRM,Exc L3-5 RORB RPRM,RNAseq 090,CS201912131_91,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L5 RORB MED8,Exc L5 RORB MED8,RNAseq 091,CS201912131_92,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L5 THEMIS FGF10,Exc L5 THEMIS FGF10,RNAseq 092,CS201912131_93,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L6 THEMIS LINC00343,Exc L6 THEMIS LINC00343,RNAseq 093,CS201912131_94,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L6 THEMIS SLN,Exc L6 THEMIS SLN,RNAseq 094,CS201912131_95,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L6 THEMIS SNTG2,Exc L6 THEMIS SNTG2,RNAseq 095,CS201912131_96,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L5-6 THEMIS SMYD1,Exc L5-6 THEMIS SMYD1,RNAseq 096,CS201912131_97,L6 IT Car3,L6 IT_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L5-6 FEZF2 OR1L8,Exc L5-6 FEZF2 OR1L8,RNAseq 097,CS201912131_98,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L5 THEMIS LINC01116,Exc L5 THEMIS LINC01116,RNAseq 098,CS201912131_99,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L5 THEMIS RGPD6,Exc L5 THEMIS RGPD6,RNAseq 099,CS201912131_100,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L5-6 FEZF2 C9orf135-AS1,Exc L5-6 FEZF2 C9orf135-AS1,RNAseq 100,CS201912131_101,,L6 CT_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L5-6 FEZF2 FILIP1L,Exc L5-6 FEZF2 FILIP1L,RNAseq 101,CS201912131_102,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L5-6 FEZF2 SH2D1B,Exc L5-6 FEZF2 SH2D1B,RNAseq 102,CS201912131_103,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L6 FEZF2 PDYN,Exc L6 FEZF2 PDYN,RNAseq 103,CS201912131_104,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L6 FEZF2 FFAR4,Exc L6 FEZF2 FFAR4,RNAseq 104,CS201912131_105,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L6 FEZF2 PROKR2,Exc L6 FEZF2 PROKR2,RNAseq 105,CS201912131_106,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L5-6 FEZF2 CFTR,Exc L5-6 FEZF2 CFTR,RNAseq 106,CS201912131_107,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L6 FEZF2 KLK7,Exc L6 FEZF2 KLK7,RNAseq 107,CS201912131_108,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L6 FEZF2 POGK,Exc L6 FEZF2 POGK,RNAseq 108,CS201912131_109,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L5 FEZF2 CSN1S1,Exc L5 FEZF2 CSN1S1,RNAseq 109,CS201912131_110,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L3-5 FEZF2 ASGR2,Exc L3-5 FEZF2 ASGR2,RNAseq 110,CS201912131_111,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L3-5 FEZF2 LINC01107,Exc L3-5 FEZF2 LINC01107,RNAseq 111,CS201912131_112,,L5 ET_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L5 FEZF2 PKD2L1,Exc L5 FEZF2 PKD2L1,RNAseq 112,CS201912131_113,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L5 FEZF2 NREP-AS1,Exc L5 FEZF2 NREP-AS1,RNAseq 113,CS201912131_114,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L5 FEZF2 RNF144A-AS1,Exc L5 FEZF2 RNF144A-AS1,RNAseq 114,CS201912131_115,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L5-6 FEZF2 IFNG-AS1,Exc L5-6 FEZF2 IFNG-AS1,RNAseq 115,CS201912131_116,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Exc L5-6 FEZF2 LPO,Exc L5-6 FEZF2 LPO,RNAseq 116,CS201912131_117,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +OPC L1-6 PDGFRA COL20A1,OPC L1-6 PDGFRA COL20A1,RNAseq 118,CS201912131_118,OPC,OPC,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Oligo L3-6 OPALIN ENPP6,Oligo L3-6 OPALIN ENPP6,RNAseq 119,CS201912131_119,,Oligo_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Oligo L2-6 OPALIN FTH1P3,Oligo L2-6 OPALIN FTH1P3,RNAseq 120,CS201912131_120,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Oligo L5-6 OPALIN LDLRAP1,Oligo L5-6 OPALIN LDLRAP1,RNAseq 121,CS201912131_121,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Astro L1-6 FGFR3 AQP1,Astro L1-6 FGFR3 AQP1,RNAseq 122,CS201912131_122,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Astro L1 FGFR3 SERPINI2,Astro L1 FGFR3 SERPINI2,RNAseq 123,CS201912131_123,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Astro L1-6 FGFR3 PLCG1,Astro L1-6 FGFR3 PLCG1,RNAseq 124,CS201912131_124,,Astro_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Endo L2-5 NOSTRIN SRGN,Endo L2-5 NOSTRIN SRGN,RNAseq 125,CS201912131_125,Endothelial,Endo,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +VLMC L1-5 PDGFRA COLEC12,VLMC L1-5 PDGFRA COLEC12,RNAseq 126,CS201912131_126,VLMC,VLMC,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Micro L1-6 TYROBP CD74,Micro L1-6 TYROBP CD74,RNAseq 127,CS201912131_127,Microglia-PVM,Microglia/PVM,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Lamp5,Lamp5,"RNAseq 001-008, 014-015",CS201912131_128,Lamp5,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Sncg,Sncg,"RNAseq 009-013, 016-018",CS201912131_129,Sncg,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Vip,Vip,RNAseq 019-039,CS201912131_130,Vip,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Sst,Sst,RNAseq 041-058,CS201912131_131,Sst,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Pvalb,Pvalb,RNAseq 059-072,CS201912131_132,Pvalb,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +L2/3 IT,L2/3 IT,RNAseq 073-080,CS201912131_133,L2/3 IT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +L5 IT,L5 IT,RNAseq 081-092,CS201912131_134,L5 IT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +L6 IT,L6 IT,RNAseq 093-095,CS201912131_135,L6 IT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +L6 CT,L6 CT,RNAseq 097-102,CS201912131_136,L6 CT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +L6b,L6b,RNAseq 103-108,CS201912131_137,L6b,L6b,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +L5 ET,L5 ET,RNAseq 109-111,CS201912131_138,L5 ET,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +L5/6 NP,L5/6 NP,RNAseq 112-116,CS201912131_139,L5/6 NP,L5/6 NP,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Oligo,Oligo,"RNAseq 117, 119-121",CS201912131_140,Oligodendrocyte,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Astro,Astro,RNAseq 122-124,CS201912131_142,Astrocyte,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +CGE/PoA,CGE/PoA,RNAseq 001-039,CS201912131_143,CGE/PoA,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +MGE,MGE,RNAseq 040-072,CS201912131_144,MGE,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +IT projecting,IT projecting,RNAseq 073-096,CS201912131_145,IT projecting,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Non-IT projecting,Non-IT projecting,RNAseq 097-116,CS201912131_146,Non-IT projecting,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Oligo-OPC,Oligo-OPC,RNAseq 116-120,CS201912131_147,Oligodendrocyte-OPC,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Other NN,Other NN,RNAseq 125-127,CS201912131_148,Non-neural,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +GABAergic,GABAergic,RNAseq 001-072,CS201912131_149,Neuronal: GABAergic,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Glutamatergic,Glutamatergic,RNAseq 073-116,CS201912131_150,Neuronal: Glutamatergic,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Non-Neuronal,Non-Neuronal,RNAseq 117-124,CS201912131_151,Non-neuronal,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Lamp5_C2,Lamp5_C2,RNAseq 002-004,CS201912131_152,,Lamp5_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Lamp5_C3,Lamp5_C3,RNAseq 005-006,CS201912131_153,Lamp5 Lhx6,Lamp5_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Lamp5_C4,Lamp5_C4,RNAseq 007-008,CS201912131_154,,Lamp5_4,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Sncg_C1,Sncg_C1,RNAseq 009-010,CS201912131_155,,Sncg_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Sncg_C3,Sncg_C3,RNAseq 012-013,CS201912131_156,,Sncg_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Lamp5_C5,Lamp5_C5,RNAseq 014-015,CS201912131_157,,Lamp5_5,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Sncg_C4,Sncg_C4,RNAseq 016-018,CS201912131_158,,Sncg_4,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Vip_C1,Vip_C1,RNAseq 019-021,CS201912131_159,,Vip_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Vip_C2,Vip_C2,"RNAseq 022-028, 039",CS201912131_160,,Vip_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Vip_C3,Vip_C3,RNAseq 029-033,CS201912131_161,,Vip_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Vip_C4,Vip_C4,RNAseq 034-038,CS201912131_162,,Vip_4,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Sst_C1,Sst_C1,RNAseq 041-042,CS201912131_163,,Sst_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Sst_C2,Sst_C2,RNAseq 043-045,CS201912131_164,,Sst_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Sst_C3,Sst_C3,"RNAseq 046-047, 050-052",CS201912131_165,,Sst_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Sst_C4,Sst_C4,RNAseq 048-049,CS201912131_166,,Sst_4,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Sst_C5,Sst_C5,RNAseq 053-054,CS201912131_167,,Sst_5,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Sst_C6,Sst_C6,RNAseq 055-057,CS201912131_168,,Sst_6,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Pvalb_C1,Pvalb_C1,RNAseq 059-068,CS201912131_169,,Pvalb_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Pvalb_C2,Pvalb_C2,RNAseq 069-071,CS201912131_170,,Pvalb_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +L2/3 IT(i),L2/3 IT(i),RNAseq 073-078,CS201912131_171,,L2/3 IT,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +L5 IT_C1,L5 IT_C1,RNAseq 079-086,CS201912131_172,,L5 IT_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +L5 IT_C2,L5 IT_C2,"RNAseq 087, 089-090",CS201912131_173,,L5 IT_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +L6 IT_C2,L6 IT_C2,"RNAseq 088, 095",CS201912131_174,,L6 IT_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +L5 IT_C3,L5 IT_C3,RNAseq 091-092,CS201912131_175,,L5 IT_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +L6 IT_C1,L6 IT_C1,RNAseq 093-094,CS201912131_176,,L6 IT_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +L6 CT_C1,L6 CT_C1,"RNAseq 097-099, 101-102",CS201912131_177,,L6 CT_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +L5 ET_C1,L5 ET_C1,RNAseq 109-110,CS201912131_178,,L5 ET_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Oligo_C2,Oligo_C2,RNAseq 120-121,CS201912131_179,,Oligo_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, +Astro_C1,Astro_C1,RNAseq 122-123,CS201912131_180,,Astro_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN201912132.csv b/src/dendrograms/nomenclature_table_CCN201912132.csv new file mode 100644 index 00000000..a448f9a9 --- /dev/null +++ b/src/dendrograms/nomenclature_table_CCN201912132.csv @@ -0,0 +1,135 @@ +cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions +Inh SST NPY,Inh SST NPY,RNAseq 01,CS201912132_1,Sst Chodl,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh LAMP5 COL5A2,Inh LAMP5 COL5A2,RNAseq 02,CS201912132_2,,Lamp5_5,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh LAMP5 TOX2,Inh LAMP5 TOX2,RNAseq 03,CS201912132_3,,Lamp5_1,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh LAMP5 TRPC6,Inh LAMP5 TRPC6,RNAseq 04,CS201912132_4,Lamp5 Lhx6,Lamp5_3,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh LAMP5 WWP1,Inh LAMP5 WWP1,RNAseq 05,CS201912132_5,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh LAMP5 LOC108591196,Inh LAMP5 LOC108591196,RNAseq 06,CS201912132_6,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh PAX6 HMBOX1,Inh PAX6 HMBOX1,RNAseq 07,CS201912132_7,,Lamp5_4,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh SNCG PLPPR1,Inh SNCG PLPPR1,RNAseq 08,CS201912132_8,,Sncg_2,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh PAX6 ANKRD6,Inh PAX6 ANKRD6,RNAseq 09,CS201912132_9,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh VIP CYP19A1,Inh VIP CYP19A1,RNAseq 10,CS201912132_10,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh SNCG CNTN4,Inh SNCG CNTN4,RNAseq 11,CS201912132_11,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh PAX6 CDH4,Inh PAX6 CDH4,RNAseq 12,CS201912132_12,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh GAD1 PCP4,Inh GAD1 PCP4,RNAseq 13,CS201912132_13,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh GAD1 LOC108589948,Inh GAD1 LOC108589948,RNAseq 14,CS201912132_14,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh VIP THSD7B,Inh VIP THSD7B,RNAseq 15,CS201912132_15,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh VIP LOC100397259,Inh VIP LOC100397259,RNAseq 16,CS201912132_16,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh GAD1 NPSR1,Inh GAD1 NPSR1,RNAseq 17,CS201912132_17,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh SNCG LOC108587895,Inh SNCG LOC108587895,RNAseq 18,CS201912132_18,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh VIP LOC108589153,Inh VIP LOC108589153,RNAseq 19,CS201912132_19,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh VIP FIGN,Inh VIP FIGN,RNAseq 20,CS201912132_20,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh VIP GPR149,Inh VIP GPR149,RNAseq 21,CS201912132_21,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh VIP LOC108588071,Inh VIP LOC108588071,RNAseq 22,CS201912132_22,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh VIP VAT1L,Inh VIP VAT1L,RNAseq 23,CS201912132_23,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh VIP CIT,Inh VIP CIT,RNAseq 24,CS201912132_24,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh VIP LOC108588539,Inh VIP LOC108588539,RNAseq 25,CS201912132_25,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh PAX6 MEIS2,Inh PAX6 MEIS2,RNAseq 26,CS201912132_26,Meis2,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh SST LOC108589054,Inh SST LOC108589054,RNAseq 27,CS201912132_27,,Sst_5,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh SST LOC108588801,Inh SST LOC108588801,RNAseq 28,CS201912132_28,,Sst_6,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh SST LOC103788138,Inh SST LOC103788138,RNAseq 29,CS201912132_29,,Sst_7,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh SST MPP5,Inh SST MPP5,RNAseq 30,CS201912132_30,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh SST KIRREL3,Inh SST KIRREL3,RNAseq 31,CS201912132_31,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh SST LOC103788660,Inh SST LOC103788660,RNAseq 32,CS201912132_32,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh SST CBLN4,Inh SST CBLN4,RNAseq 33,CS201912132_33,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh SST ABI3BP,Inh SST ABI3BP,RNAseq 34,CS201912132_34,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh SST TMEFF2,Inh SST TMEFF2,RNAseq 35,CS201912132_35,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh SST P4HA1,Inh SST P4HA1,RNAseq 36,CS201912132_36,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh SST LTBP1,Inh SST LTBP1,RNAseq 37,CS201912132_37,,Sst_4,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh SST AIM1,Inh SST AIM1,RNAseq 38,CS201912132_38,,Sst_1,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh SST VAPA,Inh SST VAPA,RNAseq 39,CS201912132_39,,Sst_2,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh SST PCSK5,Inh SST PCSK5,RNAseq 40,CS201912132_40,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh PVALB OTOGL,Inh PVALB OTOGL,RNAseq 41,CS201912132_41,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh PVALB LOC103790362,Inh PVALB LOC103790362,RNAseq 42,CS201912132_42,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh PVALB OSBP2,Inh PVALB OSBP2,RNAseq 43,CS201912132_43,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh PVALB LOC103789439,Inh PVALB LOC103789439,RNAseq 44,CS201912132_44,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh PVALB GSTK1,Inh PVALB GSTK1,RNAseq 45,CS201912132_45,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh PVALB C8H7orf62,Inh PVALB C8H7orf62,RNAseq 46,CS201912132_46,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh PVALB SST LRRC6,Inh PVALB SST LRRC6,RNAseq 47,CS201912132_47,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh PVALB ADAMTS3,Inh PVALB ADAMTS3,RNAseq 48,CS201912132_48,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh PVALB SST EYS,Inh PVALB SST EYS,RNAseq 49,CS201912132_49,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh PVALB PCDH19,Inh PVALB PCDH19,RNAseq 50,CS201912132_50,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh PVALB KLHL29,Inh PVALB KLHL29,RNAseq 51,CS201912132_51,,Pvalb_2,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Inh PVALB FAM19A4,Inh PVALB FAM19A4,RNAseq 52,CS201912132_52,Chandelier,Chandelier cell,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Exc THEMIS ANO3,Exc THEMIS ANO3,RNAseq 53,CS201912132_53,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Exc RORB LOC108588466,Exc RORB LOC108588466,RNAseq 54,CS201912132_54,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Exc RORB SERPINE2,Exc RORB SERPINE2,RNAseq 55,CS201912132_55,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Exc RORB NDST3,Exc RORB NDST3,RNAseq 56,CS201912132_56,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Exc RORB KNL1,Exc RORB KNL1,RNAseq 57,CS201912132_57,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Exc RORB CAV3,Exc RORB CAV3,RNAseq 58,CS201912132_58,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Exc THEMIS KCTD16,Exc THEMIS KCTD16,RNAseq 59,CS201912132_59,,L6 IT_2,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Exc THEMIS COBL,Exc THEMIS COBL,RNAseq 60,CS201912132_60,,L6 IT_1,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Exc RORB LOC108593203,Exc RORB LOC108593203,RNAseq 61,CS201912132_61,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Exc RORB ANKRD27,Exc RORB ANKRD27,RNAseq 62,CS201912132_62,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Exc RORB ACTA2,Exc RORB ACTA2,RNAseq 63,CS201912132_63,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Exc RORB USH1C,Exc RORB USH1C,RNAseq 64,CS201912132_64,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Exc RORB SLC38A11,Exc RORB SLC38A11,RNAseq 65,CS201912132_65,,L5 IT_3,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Exc RORB PPA2,Exc RORB PPA2,RNAseq 66,CS201912132_66,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Exc RORB CHGA,Exc RORB CHGA,RNAseq 67,CS201912132_67,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Exc RORB HACL1,Exc RORB HACL1,RNAseq 68,CS201912132_68,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Oligo SLC1A3 LOC103793418,Oligo SLC1A3 LOC103793418,RNAseq 77,CS201912132_69,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Exc THEMIS ARL13B,Exc THEMIS ARL13B,RNAseq 69,CS201912132_70,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Exc FEZF2 PIEZO2,Exc FEZF2 PIEZO2,RNAseq 70,CS201912132_71,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Exc FEZF2 PDZRN4,Exc FEZF2 PDZRN4,RNAseq 71,CS201912132_72,,L5 ET_2,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Exc FEZF2 RGS4,Exc FEZF2 RGS4,RNAseq 72,CS201912132_73,,L6 CT_1,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Exc FEZF2 NRP1,Exc FEZF2 NRP1,RNAseq 73,CS201912132_74,,L6 CT_2,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Exc FEZF2 ARSJ,Exc FEZF2 ARSJ,RNAseq 74,CS201912132_75,L6b,L6b,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Exc THEMIS NTNG2,Exc THEMIS NTNG2,RNAseq 75,CS201912132_76,L6 IT Car3,L6 IT_3,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Exc FEZF2 CRYM,Exc FEZF2 CRYM,RNAseq 76,CS201912132_77,L5/6 NP,L5/6 NP,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +OPC PDGFRA VCAN,OPC PDGFRA VCAN,RNAseq 78,CS201912132_78,OPC,OPC,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Astro FGFR3 EPHB1,Astro FGFR3 EPHB1,RNAseq 79,CS201912132_79,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Astro FGFR3 NWD1,Astro FGFR3 NWD1,RNAseq 80,CS201912132_80,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Astro FGFR3 RCN2,Astro FGFR3 RCN2,RNAseq 81,CS201912132_81,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Astro FGFR3 GFAP,Astro FGFR3 GFAP,RNAseq 82,CS201912132_82,,Astro_1,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Oligo OPALIN LOC103790018,Oligo OPALIN LOC103790018,RNAseq 83,CS201912132_83,,Oligo_2,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Oligo OPALIN MOBP,Oligo OPALIN MOBP,RNAseq 84,CS201912132_84,,Oligo_1,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Endo NOSTRIN IL1R1,Endo NOSTRIN IL1R1,RNAseq 85,CS201912132_85,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Endo NOSTRIN CXCL12,Endo NOSTRIN CXCL12,RNAseq 86,CS201912132_86,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Glia SLC1A3 FBLN5,Glia SLC1A3 FBLN5,RNAseq 87,CS201912132_87,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Peri SLC1A3 CHST3,Peri SLC1A3 CHST3,RNAseq 88,CS201912132_88,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Peri SLC1A3 EPSTI1,Peri SLC1A3 EPSTI1,RNAseq 89,CS201912132_89,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +VLMC PDGFRA C7,VLMC PDGFRA C7,RNAseq 90,CS201912132_90,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +VLMC SLC1A3 CEMIP,VLMC SLC1A3 CEMIP,RNAseq 91,CS201912132_91,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +VLMC SLC1A3 SLC13A3,VLMC SLC1A3 SLC13A3,RNAseq 92,CS201912132_92,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +VLMC SLC1A3 SLC47A1,VLMC SLC1A3 SLC47A1,RNAseq 93,CS201912132_93,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Micro TYROBP LOC103788313,Micro TYROBP LOC103788313,RNAseq 94,CS201912132_94,Microglia-PVM,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Lamp5,Lamp5,RNAseq 02-07,CS201912132_95,Lamp5,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Sncg,Sncg,RNAseq 08-14,CS201912132_96,Sncg,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Vip,Vip,RNAseq 15-25,CS201912132_97,Vip,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Sst,Sst,"RNAseq 27-40, 47",CS201912132_98,Sst,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Pvalb,Pvalb,"RNAseq 41-46, 48-52",CS201912132_99,Pvalb,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +L2/3 IT,L2/3 IT,RNAseq 53-56,CS201912132_100,L2/3 IT,L2/3 IT,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +L5 IT,L5 IT,"RNAseq 57-58, 61-68",CS201912132_101,L5 IT,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +L6 IT,L6 IT,RNAseq 59-60,CS201912132_102,L6 IT,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +L5 ET,L5 ET,RNAseq 69-71,CS201912132_103,L5 ET,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +L6 CT,L6 CT,RNAseq 72-73,CS201912132_104,L6 CT,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Oligo,Oligo,"RNAseq 77, 83-84",CS201912132_105,Oligodendrocyte,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Astro,Astro,RNAseq 79-82,CS201912132_106,Astrocyte,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Endo,Endo,RNAseq 85-87,CS201912132_107,Endothelial,Endo,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Peri,Peri,RNAseq 88-89,CS201912132_108,Pericyte,Peri,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +VLMC,VLMC,RNAseq 90-93,CS201912132_109,VLMC,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +MGE,MGE,"RNAseq 01, 27-52",CS201912132_110,MGE,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +CGE/PoA,CGE/PoA,RNAseq 02-26,CS201912132_111,CGE/PoA,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +IT projecting,IT projecting,"RNAseq 53-68, 75",CS201912132_112,IT projecting,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Non-IT projecting,Non-IT projecting,RNAseq 69-76,CS201912132_113,Non-IT projecting,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Oligo-OPC,Oligo-OPC,"RNAseq 77-78, 83-84",CS201912132_114,Oligodendrocyte-OPC,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Other NN,Other NN,RNAseq 85-94,CS201912132_115,Non-neural,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +GABAergic,GABAergic,RNAseq 01-52,CS201912132_116,Neuronal: GABAergic,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Glutamatergic,Glutamatergic,RNAseq 53-76,CS201912132_117,Neuronal: Glutamatergic,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Non-Neuronal,Non-Neuronal,RNAseq 77-84,CS201912132_118,Non-neuronal,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Sst Chodl(i),Sst Chodl(i),"RNAseq 01, 30",CS201912132_119,,Sst Chodl,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Lamp5_C2,Lamp5_C2,RNAseq 05-06,CS201912132_120,,Lamp5_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Sncg_C1,Sncg_C1,"RNAseq 09, 12",CS201912132_121,,Sncg_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Sncg_C3,Sncg_C3,RNAseq 10-11,CS201912132_122,,Sncg_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Sncg_C4,Sncg_C4,RNAseq 13-14,CS201912132_123,,Sncg_4,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Vip_C4,Vip_C4,"RNAseq 15, 25",CS201912132_124,,Vip_4,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Vip_C2,Vip_C2,"RNAseq 16-18, 24",CS201912132_125,,Vip_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Vip_C1,Vip_C1,RNAseq 19-20,CS201912132_126,,Vip_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Vip_C3,Vip_C3,RNAseq 21-23,CS201912132_127,,Vip_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Sst_C3,Sst_C3,"RNAseq 31-36, 40, 47",CS201912132_128,,Sst_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Pvalb_C1,Pvalb_C1,"RNAseq 41-46, 48-50",CS201912132_129,,Pvalb_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +L5 IT_C1,L5 IT_C1,"RNAseq 57-58, 61-64",CS201912132_130,,L5 IT_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +L5 IT_C2,L5 IT_C2,RNAseq 66-68,CS201912132_131,,L5 IT_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +L5 ET_C1,L5 ET_C1,RNAseq 69-70,CS201912132_132,,L5 ET_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +Astro_C2,Astro_C2,RNAseq 79-81,CS201912132_133,,Astro_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, +VLMC(i),VLMC(i),RNAseq 90-92,CS201912132_134,,VLMC,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202002011.csv b/src/dendrograms/nomenclature_table_CCN202002011.csv new file mode 100644 index 00000000..3417dde7 --- /dev/null +++ b/src/dendrograms/nomenclature_table_CCN202002011.csv @@ -0,0 +1,110 @@ +cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions +L2/3 IT (1),L2/3 IT (1),SCF 01,CS202002011_1,,SCF-ENS2-C4_1_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L2/3 IT (2),L2/3 IT (2),SCF 02,CS202002011_2,,SCF-ENS2-C4_1_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L2/3 IT (3),L2/3 IT (3),SCF 03,CS202002011_3,,SCF-ENS2-C4_2_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L2/3 IT (4),L2/3 IT (4),SCF 04,CS202002011_4,,SCF-ENS2-C4_2_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L2/3 IT (5),L2/3 IT (5),SCF 05,CS202002011_5,,SCF-ENS2-C4_2_3,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L4/5 IT (1),L4/5 IT (1),SCF 06,CS202002011_6,,SCF-ENS2-C1_1_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L4/5 IT (2),L4/5 IT (2),SCF 07,CS202002011_7,,SCF-ENS2-C1_2_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L4/5 IT (3),L4/5 IT (3),SCF 08,CS202002011_8,,SCF-ENS2-C1_2_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L5 IT (1),L5 IT (1),SCF 09,CS202002011_9,,SCF-ENS2-C3_1_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L5 IT (2),L5 IT (2),SCF 10,CS202002011_10,,SCF-ENS2-C3_2_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L5 IT (3),L5 IT (3),SCF 11,CS202002011_11,,SCF-ENS2-C3_2_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L6 IT,L6 IT,SCF 12,CS202002011_12,L6 IT,SCF-ENS2-C3_1_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L6 IT Car3,L6 IT Car3,SCF 13,CS202002011_13,L6 IT Car3,SCF-ENS2-C3_3_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L5 ET (1),L5 ET (1),SCF 14,CS202002011_14,,SCF-ENS2-C9_1_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L5 ET (2),L5 ET (2),SCF 15,CS202002011_15,,SCF-ENS2-C9_2_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L5 ET (3),L5 ET (3),SCF 16,CS202002011_16,,SCF-ENS2-C9_2_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L6 CT Cpa6 (1),L6 CT Cpa6 (1),SCF 17,CS202002011_17,,SCF-ENS2-C2_1_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L6 CT Cpa6 (2),L6 CT Cpa6 (2),SCF 18,CS202002011_18,,SCF-ENS2-C2_1_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L6 CT Cpa6 (3),L6 CT Cpa6 (3),SCF 19,CS202002011_19,,SCF-ENS2-C2_2_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L6 CT Cpa6 (4),L6 CT Cpa6 (4),SCF 20,CS202002011_20,,SCF-ENS2-C2_2_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L6 CT Gpr139,L6 CT Gpr139,SCF 21,CS202002011_21,,SCF-ENS2-C2_2_3,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L6 CT Cpa6 (5),L6 CT Cpa6 (5),SCF 22,CS202002011_22,,SCF-ENS2-C2_2_4,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L6 CT Nxph2 Pou3f2 (1),L6 CT Nxph2 Pou3f2 (1),SCF 23,CS202002011_23,,SCF-ENS2-C2_3_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L6 CT Nxph2 Pou3f2 (2),L6 CT Nxph2 Pou3f2 (2),SCF 24,CS202002011_24,,SCF-ENS2-C2_3_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L6 CT Nxph2 Kit,L6 CT Nxph2 Kit,SCF 25,CS202002011_25,,SCF-ENS2-C2_3_3,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L5 NP Trh,L5 NP Trh,SCF 26,CS202002011_26,,SCF-ENS2-C7_1_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L5 NP Slc17a8 (2),L5 NP Slc17a8 (2),SCF 27,CS202002011_27,,SCF-ENS2-C7_2_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L5 NP Slc17a8 (1),L5 NP Slc17a8 (1),SCF 28,CS202002011_28,,SCF-ENS2-C7_2_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L6 NP Trh,L6 NP Trh,SCF 29,CS202002011_29,,SCF-ENS2-C7_1_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L6b Shisa6 (1),L6b Shisa6 (1),SCF 30,CS202002011_30,,SCF-ENS2-C8_1_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L6b Shisa6 (2),L6b Shisa6 (2),SCF 31,CS202002011_31,,SCF-ENS2-C8_1_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L6b Ror1,L6b Ror1,SCF 32,CS202002011_32,,SCF-ENS2-C8_2_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L6b Kcnip1 (2),L6b Kcnip1 (2),SCF 33,CS202002011_33,,SCF-ENS2-C8_3_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L6b Kcnip1 (1),L6b Kcnip1 (1),SCF 34,CS202002011_34,,SCF-ENS2-C8_3_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +Pvalb Reln,Pvalb Reln,SCF 35,CS202002011_35,,SCF-ENS2-C5_1_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +Pvalb Calb1,Pvalb Calb1,SCF 36,CS202002011_36,,SCF-ENS2-C5_1_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +Pvalb Gabrg1,Pvalb Gabrg1,SCF 37,CS202002011_37,,SCF-ENS2-C5_4_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +Pvalb Vipr2,Pvalb Vipr2,SCF 38,CS202002011_38,Chandelier,SCF-ENS2-C5_5_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +Sst Myh8,Sst Myh8,SCF 39,CS202002011_39,,SCF-ENS2-C5_2_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +Sst Crhr2 (1),Sst Crhr2 (1),SCF 40,CS202002011_40,,SCF-ENS2-C5_2_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +Sst Crhr2 (2),Sst Crhr2 (2),SCF 41,CS202002011_41,,SCF-ENS2-C5_2_3,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +Sst Calb2,Sst Calb2,SCF 42,CS202002011_42,,SCF-ENS2-C5_3_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +Sst Hspe,Sst Hspe,SCF 43,CS202002011_43,,SCF-ENS2-C5_3_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +Sst Chodl,Sst Chodl,SCF 44,CS202002011_44,Sst Chodl,SCF-ENS2-C10_1_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +Lamp5 Slc35d3,Lamp5 Slc35d3,SCF 45,CS202002011_45,,SCF-ENS2-C6_2_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +Lamp5 Pdlim5,Lamp5 Pdlim5,SCF 46,CS202002011_46,,SCF-ENS2-C6_4_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +Lamp5 Pax6,Lamp5 Pax6,SCF 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63,CS202002011_63,,SCF-ENS1-C3_3,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L5 ET (1) [level 1],L5 ET (1) [level 1],SCF 64,CS202002011_64,,SCF-ENS1-C9_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L5 ET (2_3) [level 1],L5 ET (2_3) [level 1],SCF 65,CS202002011_65,,SCF-ENS1-C9_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L6 CT Cpa6 [level 1],L6 CT Cpa6 [level 1],SCF 66,CS202002011_66,,SCF-ENS1-C2_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L6 CT Cpa6_Gpr139 [level 1],L6 CT Cpa6_Gpr139 [level 1],SCF 67,CS202002011_67,,SCF-ENS1-C2_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L6 CT Nxph2 [level 1],L6 CT Nxph2 [level 1],SCF 68,CS202002011_68,,SCF-ENS1-C2_3,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L5/6 NP [level 1],L5/6 NP [level 1],SCF 69,CS202002011_69,,SCF-ENS1-C7_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L5 NP Slc17a8 [level 1],L5 NP Slc17a8 [level 1],SCF 70,CS202002011_70,,SCF-ENS1-C7_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L6b Shisa6 [level 1],L6b Shisa6 [level 1],SCF 71,CS202002011_71,,SCF-ENS1-C8_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L6b Ror1 [level 1],L6b Ror1 [level 1],SCF 72,CS202002011_72,,SCF-ENS1-C8_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L6b Kcnip1 [level 1],L6b Kcnip1 [level 1],SCF 73,CS202002011_73,,SCF-ENS1-C8_3,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +Pvalb Reln_Calb1 [level 1],Pvalb Reln_Calb1 [level 1],SCF 74,CS202002011_74,,SCF-ENS1-C5_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +Pvalb Gabrg1 [level 1],Pvalb Gabrg1 [level 1],SCF 75,CS202002011_75,,SCF-ENS1-C5_4,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +Pvalb Vipr2 [level 1],Pvalb Vipr2 [level 1],SCF 76,CS202002011_76,,SCF-ENS1-C5_5,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +Sst Myh8_Crhr2 [level 1],Sst Myh8_Crhr2 [level 1],SCF 77,CS202002011_77,,SCF-ENS1-C5_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +Sst Calb2_Hspe [level 1],Sst Calb2_Hspe [level 1],SCF 78,CS202002011_78,,SCF-ENS1-C5_3,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +Sst Chodl [level 1],Sst Chodl [level 1],SCF 79,CS202002011_79,,SCF-ENS1-C10_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +Lamp5 Slc35d3 [level 1],Lamp5 Slc35d3 [level 1],SCF 80,CS202002011_80,,SCF-ENS1-C6_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +Lamp5 Pdlim5_Pax6 [level 1],Lamp5 Pdlim5_Pax6 [level 1],SCF 81,CS202002011_81,,SCF-ENS1-C6_4,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +Lamp5 Lhx6 [level 1],Lamp5 Lhx6 [level 1],SCF 82,CS202002011_82,,SCF-ENS1-C6_6,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +Sncg [level 1],Sncg [level 1],SCF 83,CS202002011_83,,SCF-ENS1-C6_5,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +Vip Chat_Crispld2 [level 1],Vip Chat_Crispld2 [level 1],SCF 84,CS202002011_84,,SCF-ENS1-C6_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +Vip Gpc3_Htr1f_lgfbp6 [level 1],Vip Gpc3_Htr1f_lgfbp6 [level 1],SCF 85,CS202002011_85,,SCF-ENS1-C6_3,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +Glutamatergic,Glutamatergic,SCF 01-34,CS202002011_86,Neuronal: Glutamatergic,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +IT projecting,IT projecting,SCF 01-13,CS202002011_87,IT projecting,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +Non-IT projecting,Non-IT projecting,SCF 14-34,CS202002011_88,Non-IT projecting,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +GABAergic,GABAergic,SCF 35-56,CS202002011_89,Neuronal: GABAergic,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +CGE/PoA,CGE/PoA,SCF 45-56,CS202002011_90,CGE/PoA,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +MGE,MGE,SCF 35-44,CS202002011_91,MGE,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L2/3 IT,L2/3 IT,SCF 01-05,CS202002011_92,L2/3 IT,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L4/5 IT,L4/5 IT,SCF 06-08,CS202002011_93,L4/5 IT,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L5 IT,L5 IT,SCF 09-11,CS202002011_94,L5 IT,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L5 ET,L5 ET,SCF 14-16,CS202002011_95,L5 ET,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L6 CT,L6 CT,SCF 17-25,CS202002011_96,L6 CT,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L6 CT Cpa6,L6 CT Cpa6,"SCF 17-20, 22",CS202002011_97,,RNAseq 076 in CCN202002013,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L6 CT Nxph2 Pou3f2,L6 CT Nxph2 Pou3f2,SCF 23-24,CS202002011_98,,RNAseq 078 in CCN202002013,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L5/6 NP,L5/6 NP,SCF 26-29,CS202002011_99,L5/6 NP,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L5 NP Slc17a8,L5 NP Slc17a8,SCF 27-28,CS202002011_100,,RNAseq 086-087 in CCN202002013,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L6b,L6b,SCF 30-34,CS202002011_101,L6b,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L6b Shisa6,L6b Shisa6,SCF 30-31,CS202002011_102,,RNAseq 082-083 in CCN202002013,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +L6b Kcnip1,L6b Kcnip1,SCF 33-34,CS202002011_103,,RNAseq 085 in CCN202002013,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +Pvalb,Pvalb,SCF 35-38,CS202002011_104,Pvalb,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +Sst,Sst,SCF 39-44,CS202002011_105,Sst,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +Sst Crhr2,Sst Crhr2,SCF 40-41,CS202002011_106,,RNAseq 036-037 in CCN202002013,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +Lamp5,Lamp5,SCF 45-48,CS202002011_107,Lamp5,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +Sncg,Sncg,SCF 49-50,CS202002011_108,Sncg,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, +Vip,Vip,SCF 51-56,CS202002011_109,Vip,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202002012.csv b/src/dendrograms/nomenclature_table_CCN202002012.csv new file mode 100644 index 00000000..0a2cd7ef --- /dev/null +++ b/src/dendrograms/nomenclature_table_CCN202002012.csv @@ -0,0 +1,107 @@ +cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions +L2/3 IT (it_0),L2/3 IT (it_0),LIGER 01,CS202002012_1,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +L2/3 IT (it_10),L2/3 IT (it_10),LIGER 02,CS202002012_2,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +L2/3 IT (it_5),L2/3 IT (it_5),LIGER 03,CS202002012_3,,RNAseq 060 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +L2/3 IT (it_7),L2/3 IT (it_7),LIGER 04,CS202002012_4,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +L2/3 IT (it_9),L2/3 IT (it_9),LIGER 05,CS202002012_5,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +L4/5 IT (it_1),L4/5 IT (it_1),LIGER 06,CS202002012_6,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +L4/5 IT (it_2),L4/5 IT (it_2),LIGER 07,CS202002012_7,,RNAseq 062 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +L4/5 IT (it_8),L4/5 IT (it_8),LIGER 08,CS202002012_8,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +L5 IT (it_3),L5 IT (it_3),LIGER 09,CS202002012_9,,RNAseq 064 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +L5 IT (it_6),L5 IT (it_6),LIGER 10,CS202002012_10,,RNAseq 063 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +L6 IT (it_4),L6 IT (it_4),LIGER 11,CS202002012_11,L6 IT,RNAseq 067-069 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +L5 ET (non_it_11),L5 ET (non_it_11),LIGER 12,CS202002012_12,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +L5 ET (non_it_12),L5 ET (non_it_12),LIGER 13,CS202002012_13,,RNAseq 070 in CCN202002013|L5 ET (MY-projecting),Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +L5 ET (non_it_4),L5 ET (non_it_4),LIGER 14,CS202002012_14,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +L5 ET (non_it_9),L5 ET (non_it_9),LIGER 15,CS202002012_15,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +L6 CT Cpa6 (non_it_0),L6 CT Cpa6 (non_it_0),LIGER 16,CS202002012_16,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +L6 CT Cpa6 (non_it_1),L6 CT Cpa6 (non_it_1),LIGER 17,CS202002012_17,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +L6 CT Cpa6 (non_it_10),L6 CT Cpa6 (non_it_10),LIGER 18,CS202002012_18,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +L6 CT Cpa6 (non_it_5),L6 CT Cpa6 (non_it_5),LIGER 19,CS202002012_19,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +L6 CT Cpa6 (non_it_8),L6 CT Cpa6 (non_it_8),LIGER 20,CS202002012_20,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +L6 CT Pou3f2 (non_it_2),L6 CT Pou3f2 (non_it_2),LIGER 21,CS202002012_21,,RNAseq 078 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +L6b Ror1 (non_it_7),L6b Ror1 (non_it_7),LIGER 22,CS202002012_22,L6b,RNAseq 084 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +L5/6 NP (non_it_3),L5/6 NP (non_it_3),LIGER 23,CS202002012_23,,RNAseq 088 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +L5/6 NP (non_it_6),L5/6 NP (non_it_6),LIGER 24,CS202002012_24,,RNAseq 087 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Pvalb Reln (mge_0),Pvalb Reln (mge_0),LIGER 25,CS202002012_25,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Pvalb Calb1 (mge_1),Pvalb Calb1 (mge_1),LIGER 26,CS202002012_26,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Pvalb Gabrg1 (mge_10),Pvalb Gabrg1 (mge_10),LIGER 27,CS202002012_27,,RNAseq 048 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Pvalb Il1rapl2 (mge_4),Pvalb Il1rapl2 (mge_4),LIGER 28,CS202002012_28,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Pvalb Gpr149 (mge_9),Pvalb Gpr149 (mge_9),LIGER 29,CS202002012_29,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Pvalb Vipr2 (mge_12),Pvalb Vipr2 (mge_12),LIGER 30,CS202002012_30,Chandelier,RNAseq 056-057 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Sst Pvalb Calb2 (mge_6),Sst Pvalb Calb2 (mge_6),LIGER 31,CS202002012_31,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Sst C1ql3 (mge_13),Sst C1ql3 (mge_13),LIGER 32,CS202002012_32,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Sst Calb2 (mge_14),Sst Calb2 (mge_14),LIGER 33,CS202002012_33,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Sst Hpse (mge_2),Sst Hpse (mge_2),LIGER 34,CS202002012_34,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Sst Myh8 (mge_3),Sst Myh8 (mge_3),LIGER 35,CS202002012_35,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Sst C1ql3 (mge_5),Sst C1ql3 (mge_5),LIGER 36,CS202002012_36,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Sst Crhr2 (mge_7),Sst Crhr2 (mge_7),LIGER 37,CS202002012_37,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Sst Myh8 (mge_8),Sst Myh8 (mge_8),LIGER 38,CS202002012_38,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Sst Chodl (mge_11),Sst Chodl (mge_11),LIGER 39,CS202002012_39,Sst Chodl,RNAseq 028 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Vip Chat (cge_15),Vip Chat (cge_15),LIGER 40,CS202002012_40,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Vip Chat (cge_3),Vip Chat (cge_3),LIGER 41,CS202002012_41,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Vip Chat (cge_7),Vip Chat (cge_7),LIGER 42,CS202002012_42,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Vip Chat (cge_10),Vip Chat (cge_10),LIGER 43,CS202002012_43,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Vip Serpinf1 (cge_11),Vip Serpinf1 (cge_11),LIGER 44,CS202002012_44,,RNAseq 015-017 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Vip Gpc3 (cge_9),Vip Gpc3 (cge_9),LIGER 45,CS202002012_45,,RNAseq 019 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Vip Igfbp6 (cge_6),Vip Igfbp6 (cge_6),LIGER 46,CS202002012_46,,RNAseq 026-027 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Vip Htr1f (cge_2),Vip Htr1f (cge_2),LIGER 47,CS202002012_47,,RNAseq 018 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Vip Mybpc1 (cge_4),Vip Mybpc1 (cge_4),LIGER 48,CS202002012_48,,"RNAseq 021-022, 024 in CCN202002013",Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Sncg Npy2r (cge_8),Sncg Npy2r (cge_8),LIGER 49,CS202002012_49,,RNAseq 013 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Sncg Slc17a8 (cge_13),Sncg Slc17a8 (cge_13),LIGER 50,CS202002012_50,,RNAseq 010 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Lamp5 Lhx6 (cge_14),Lamp5 Lhx6 (cge_14),LIGER 51,CS202002012_51,Lamp5 Lhx6,RNAseq 008 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Lamp5 Slc35d3 (cge_0),Lamp5 Slc35d3 (cge_0),LIGER 52,CS202002012_52,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Lamp5 Slc35d3 (cge_16),Lamp5 Slc35d3 (cge_16),LIGER 53,CS202002012_53,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Lamp5 Egln3_3 (cge_5),Lamp5 Egln3_3 (cge_5),LIGER 54,CS202002012_54,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Lamp5 Pdlim5_2 (cge_1),Lamp5 Pdlim5_2 (cge_1),LIGER 55,CS202002012_55,,RNAseq 006 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Lamp5 Pax6 (cge_12),Lamp5 Pax6 (cge_12),LIGER 56,CS202002012_56,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Astro_Top2a (nn_14),Astro_Top2a (nn_14),LIGER 57,CS202002012_57,,RNAseq 092 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Astro Aqp4_Gfap (nn_6),Astro Aqp4_Gfap (nn_6),LIGER 58,CS202002012_58,,RNAseq 093 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Astro Aqp4_Slc7a10 (nn_1),Astro Aqp4_Slc7a10 (nn_1),LIGER 59,CS202002012_59,,RNAseq 094 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +OPC Pdgfra (nn_3),OPC Pdgfra (nn_3),LIGER 60,CS202002012_60,OPC,RNAseq 091 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Oligo Enpp6_2 (nn_8),Oligo Enpp6_2 (nn_8),LIGER 61,CS202002012_61,,RNAseq 095 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Oligo Opalin_1 (nn_4),Oligo Opalin_1 (nn_4),LIGER 62,CS202002012_62,,RNAseq 099 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Oligo Opalin_2 (nn_0),Oligo Opalin_2 (nn_0),LIGER 63,CS202002012_63,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Oligo Opalin_2 (nn_11),Oligo Opalin_2 (nn_11),LIGER 64,CS202002012_64,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Endo (nn_5),Endo (nn_5),LIGER 65,CS202002012_65,Endothelial,RNAseq 103 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +VLMC_2 (nn_7),VLMC_2 (nn_7),LIGER 66,CS202002012_66,,RNAseq 105 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +VLMC_3 (nn_12),VLMC_3 (nn_12),LIGER 67,CS202002012_67,,RNAseq 106 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +VLMC_5 (nn_10),VLMC_5 (nn_10),LIGER 68,CS202002012_68,,RNAseq 108 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +SMC (nn_9),SMC (nn_9),LIGER 69,CS202002012_69,SMC,RNAseq 111 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Micro (nn_2),Micro (nn_2),LIGER 70,CS202002012_70,Microglia,RNAseq 113 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +PVM_1 (nn_13),PVM_1 (nn_13),LIGER 71,CS202002012_71,PVM,RNAseq 114 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Glutamatergic,Glutamatergic,LIGER 01-24,CS202002012_72,Neuronal: Glutamatergic,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +IT projecting,IT projecting,LIGER 01-11,CS202002012_73,IT projecting,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Non-IT projecting,Non-IT projecting,LIGER 12-24,CS202002012_74,Non-IT projecting,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +GABAergic,GABAergic,LIGER 25-56,CS202002012_75,Neuronal: GABAergic,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +CGE/PoA,CGE/PoA,LIGER 25-39,CS202002012_76,CGE/PoA,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +MGE,MGE,LIGER 40-56,CS202002012_77,MGE,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +L2/3 IT,L2/3 IT,LIGER 01-05,CS202002012_78,L2/3 IT,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +L2/3 IT_1,L2/3 IT_1,"LIGER 01, 03, 05",CS202002012_79,,RNAseq 058 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +L4/5 IT,L4/5 IT,LIGER 06-08,CS202002012_80,L4/5 IT,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +L4/5 IT_1,L4/5 IT_1,"LIGER 02, 04, 06, 08",CS202002012_81,,RNAseq 061 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +L5 IT,L5 IT,LIGER 09-10,CS202002012_82,L5 IT,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +L5 ET,L5 ET,LIGER 12-15,CS202002012_83,L5 ET,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +L5 ET_2,L5 ET_2,"LIGER 12, 14-15",CS202002012_84,,RNAseq 071 in CCN202002013|L5 ET (Non-MY-projecting),Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +L5/6 NP,L5/6 NP,LIGER 23-24,CS202002012_85,L5/6 NP,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +L6 CT,L6 CT,LIGER 16-21,CS202002012_86,L6 CT,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +L6 CT Cpa6,L6 CT Cpa6,LIGER 16-20,CS202002012_87,,RNAseq 076 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Pvalb,Pvalb,LIGER 25-30,CS202002012_88,Pvalb,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Pvalb Reln,Pvalb Reln,"LIGER 25, 28",CS202002012_89,,RNAseq 054 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Pvalb Calb1,Pvalb Calb1,"LIGER 26, 29",CS202002012_90,,RNAseq 052-053 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Sst,Sst,LIGER 31-39,CS202002012_91,Sst,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Sst Calb2,Sst Calb2,"LIGER 31, 33-34",CS202002012_92,,RNAseq 039 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Sst Crhr2_1,Sst Crhr2_1,"LIGER 32, 36-37",CS202002012_93,,RNAseq 036 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Sst Myh8,Sst Myh8,"LIGER 35, 38",CS202002012_94,,RNAseq 030-032 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Vip,Vip,LIGER 40-48,CS202002012_95,Vip,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Vip Chat,Vip Chat,LIGER 41-43,CS202002012_96,,"RNAseq 023, 025 in CCN202002013",Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Sncg,Sncg,LIGER 49-50,CS202002012_97,Sncg,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Lamp5,Lamp5,LIGER 51-56,CS202002012_98,Lamp5,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Lamp5 Slc35d3,Lamp5 Slc35d3,"LIGER 40, 52-53",CS202002012_99,,RNAseq 007 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Lamp5 Pax6,Lamp5 Pax6,"LIGER 54, 56",CS202002012_100,,RNAseq 001 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Non-neuronal,Non-neuronal,LIGER 57-64,CS202002012_101,Non-neuronal,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Non-neural,Non-neural,LIGER 65-71,CS202002012_102,Non-neural,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Astrocyte,Astrocyte,LIGER 57-59,CS202002012_103,Astrocyte,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Oligodendrocyte,Oligodendrocyte,LIGER 61-64,CS202002012_104,Oligodendrocyte,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +Oligo Opalin_2,Oligo Opalin_2,LIGER 63-64,CS202002012_105,,RNAseq 100 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, +VLMC,VLMC,LIGER 66-68,CS202002012_106,VLMC,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202002270.csv b/src/dendrograms/nomenclature_table_CCN202002270.csv new file mode 100644 index 00000000..f7da2089 --- /dev/null +++ b/src/dendrograms/nomenclature_table_CCN202002270.csv @@ -0,0 +1,66 @@ +cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions +Lamp5_1,Lamp5_1,Integrated 01,CS202002270_1,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Lamp5_5,Lamp5_5,Integrated 02,CS202002270_2,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Lamp5_2,Lamp5_2,Integrated 03,CS202002270_3,,Lamp5 Rosehip,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Lamp5_3,Lamp5_3,Integrated 04,CS202002270_4,Lamp5 Lhx6,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Sncg_1,Sncg_1,Integrated 05,CS202002270_5,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Sncg_2,Sncg_2,Integrated 06,CS202002270_6,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Lamp5_4,Lamp5_4,Integrated 07,CS202002270_7,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Sncg_3,Sncg_3,Integrated 08,CS202002270_8,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Sncg_4,Sncg_4,Integrated 09,CS202002270_9,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Vip_1,Vip_1,Integrated 10,CS202002270_10,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Vip_2,Vip_2,Integrated 11,CS202002270_11,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Vip_3,Vip_3,Integrated 12,CS202002270_12,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Vip_4,Vip_4,Integrated 13,CS202002270_13,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Sst Chodl,Sst Chodl,Integrated 14,CS202002270_14,Sst Chodl,Long-range projecting Sst,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Sst_1,Sst_1,Integrated 15,CS202002270_15,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Sst_2,Sst_2,Integrated 16,CS202002270_16,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Sst_4,Sst_4,Integrated 17,CS202002270_17,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Sst_3,Sst_3,Integrated 18,CS202002270_18,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Sst_5,Sst_5,Integrated 19,CS202002270_19,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Sst_6,Sst_6,Integrated 20,CS202002270_20,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Sst_7,Sst_7,Integrated 21,CS202002270_21,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Pvalb_1,Pvalb_1,Integrated 22,CS202002270_22,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Pvalb_2,Pvalb_2,Integrated 23,CS202002270_23,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Chandelier,Chandelier,Integrated 24,CS202002270_24,Chandelier,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +L2/3 IT,L2/3 IT,Integrated 25,CS202002270_25,L2/3 IT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +L6 IT_1,L6 IT_1,Integrated 26,CS202002270_26,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +L6 IT_2,L6 IT_2,Integrated 27,CS202002270_27,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +L5 IT_1,L5 IT_1,Integrated 28,CS202002270_28,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +L5 IT_2,L5 IT_2,Integrated 29,CS202002270_29,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +L5 IT_3,L5 IT_3,Integrated 30,CS202002270_30,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +L6 IT_3,L6 IT_3,Integrated 31,CS202002270_31,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +L5 ET_1,L5 ET_1,Integrated 32,CS202002270_32,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +L5 ET_2,L5 ET_2,Integrated 33,CS202002270_33,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +L6 CT_1,L6 CT_1,Integrated 34,CS202002270_34,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +L6 CT_2,L6 CT_2,Integrated 35,CS202002270_35,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +L6b,L6b,Integrated 36,CS202002270_36,L6b,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +L5/6 NP,L5/6 NP,Integrated 37,CS202002270_37,L5/6 NP,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +OPC,OPC,Integrated 38,CS202002270_38,OPC,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Astro_1,Astro_1,Integrated 39,CS202002270_39,,ILA / fibrous astrocyte,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Astro_2,Astro_2,Integrated 40,CS202002270_40,,Protoplasmic astrocyte,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Oligo_1,Oligo_1,Integrated 41,CS202002270_41,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Oligo_2,Oligo_2,Integrated 42,CS202002270_42,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Endo,Endo,Integrated 43,CS202002270_43,Endothelial,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +VLMC,VLMC,Integrated 44,CS202002270_44,VLMC,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Microglia/PVM,Microglia/PVM,Integrated 45,CS202002270_45,Microglia-PVM,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Lamp5,Lamp5,"Integrated 01-04, 07",CS202002270_46,Lamp5,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Sncg,Sncg,"Integrated 05-06, 08-09",CS202002270_47,Sncg,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Vip,Vip,Integrated 10-13,CS202002270_48,Vip,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Sst,Sst,Integrated 14-21,CS202002270_49,Sst,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Pvalb,Pvalb,Integrated 22-24,CS202002270_50,Pvalb,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +L6 IT,L6 IT,"Integrated 26-27, 31",CS202002270_51,L6 IT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +L5 IT,L5 IT,Integrated 28-30,CS202002270_52,L5 IT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +L5 ET,L5 ET,Integrated 32-33,CS202002270_53,L5 ET,Betz|L5 PT,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +L6 CT,L6 CT,Integrated 34-35,CS202002270_54,L6 CT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Astro,Astro,Integrated 39-40,CS202002270_55,Astrocyte,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Oligo,Oligo,Integrated 41-42,CS202002270_56,Oligodendrocyte,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +CGE/PoA,CGE/PoA,Integrated 01-13,CS202002270_57,CGE/PoA,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +MGE,MGE,Integrated 14-24,CS202002270_58,MGE,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +IT projecting,IT projecting,Integrated 25-31,CS202002270_59,IT projecting,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Non-IT projecting,Non-IT projecting,Integrated 32-37,CS202002270_60,Non-IT projecting,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Oligo-OPC,Oligo-OPC,"Integrated 38, 41-42",CS202002270_61,Oligodendrocyte-OPC,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Other NN,Other NN,Integrated 43-45,CS202002270_62,Non-neural,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +GABAergic,GABAergic,Integrated 01-24,CS202002270_63,Neuronal: GABAergic,Inhibitory,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Glutamatergic,Glutamatergic,Integrated 25-37,CS202002270_64,Neuronal: Glutamatergic,Excitatory,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Non-Neuronal,Non-Neuronal,Integrated 38-42,CS202002270_65,Non-neuronal,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202002271.csv b/src/dendrograms/nomenclature_table_CCN202002271.csv new file mode 100644 index 00000000..16c90989 --- /dev/null +++ b/src/dendrograms/nomenclature_table_CCN202002271.csv @@ -0,0 +1,66 @@ +cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions +Exc L5 FEZF2 LOC106993015,Exc L5 FEZF2 LOC106993015,RNAseq 001,CS202002271_1,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, +Exc L5 FEZF2 LOC114676463,Exc L5 FEZF2 LOC114676463,RNAseq 002,CS202002271_2,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, +Exc L5 RORB LOC106992498,Exc L5 RORB LOC106992498,RNAseq 003,CS202002271_3,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, +Exc L5 RORB COL13A1,Exc L5 RORB COL13A1,RNAseq 004,CS202002271_4,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, +Exc L5 RORB LOC106992627,Exc L5 RORB LOC106992627,RNAseq 005,CS202002271_5,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, +Exc L5 THEMIS THEMIS,Exc L5 THEMIS THEMIS,RNAseq 006,CS202002271_6,L6 IT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, +Exc L5 SLC17A7 NTNG2,Exc L5 SLC17A7 NTNG2,RNAseq 007,CS202002271_7,L6 IT Car3,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, +Exc L5 SLC17A7 CCDC60,Exc L5 SLC17A7 CCDC60,RNAseq 008,CS202002271_8,L6 CT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, +Exc L5 SLC17A7 LOC114676287,Exc L5 SLC17A7 LOC114676287,RNAseq 009,CS202002271_9,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, +Exc L5 SLC17A7 OTOGL,Exc L5 SLC17A7 OTOGL,RNAseq 010,CS202002271_10,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, +Exc L5 SLC17A7 LOC114680213,Exc L5 SLC17A7 LOC114680213,RNAseq 011,CS202002271_11,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, +Exc L5 SLC17A7 CORIN,Exc L5 SLC17A7 CORIN,RNAseq 012,CS202002271_12,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, +Exc L5 SLC17A7 TLL1,Exc L5 SLC17A7 TLL1,RNAseq 013,CS202002271_13,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, +L5 ET,L5 ET,RNAseq 001-002,CS202002271_14,L5 ET,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, +L5 IT,L5 IT,RNAseq 003-005,CS202002271_15,L5 IT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, +L6b,L6b,RNAseq 009-010,CS202002271_16,L6b,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, +L5/6 NP,L5/6 NP,RNAseq 011-013,CS202002271_17,L5/6 NP,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, +Non-IT projecting,Non-IT projecting,"RNAseq 001-002, 008-013",CS202002271_18,Non-IT projecting,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, +IT projecting,IT projecting,RNAseq 003-007,CS202002271_19,IT projecting,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, +Glutamatergic,Glutamatergic,RNAseq 001-013,CS202002271_20,Neuronal: Glutamatergic,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202002272.csv b/src/dendrograms/nomenclature_table_CCN202002272.csv new file mode 100644 index 00000000..5c3880d2 --- /dev/null +++ b/src/dendrograms/nomenclature_table_CCN202002272.csv @@ -0,0 +1,66 @@ +cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions +Inh L1 LAMP5 LOC101927870,Inh L1 LAMP5 LOC101927870,DNAm 01,CS202002272_1,,"RNAseq 001, 114-115 in CCN201912131",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Inh L1-6 LAMP5 CPLX3,Inh L1-6 LAMP5 CPLX3,DNAm 02,CS202002272_2,,RNAseq 002-004 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Inh L1-6 LAMP5 SFRP1,Inh L1-6 LAMP5 SFRP1,DNAm 03,CS202002272_3,,RNAseq 005-006 in CCN201912131|Lamp5_3,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Inh L1 GAD1 SP8,Inh L1 GAD1 SP8,DNAm 04,CS202002272_4,,RNAseq 007-013 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Inh L1 GAD1 NDST4,Inh L1 GAD1 NDST4,DNAm 05,CS202002272_5,,RNAseq 016-018 in CCN201912131|Sncg_4,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Inh L1-3 VIP CCDC184,Inh L1-3 VIP CCDC184,DNAm 06,CS202002272_6,,RNAseq 019-021 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Inh L1-3 VIP NPR3,Inh L1-3 VIP NPR3,DNAm 07,CS202002272_7,,RNAseq 022-026 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Inh L1-5 VIP NOX4,Inh L1-5 VIP NOX4,DNAm 08,CS202002272_8,,RNAseq 027-028 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Inh L1-6 VIP ABI3BP,Inh L1-6 VIP ABI3BP,DNAm 09,CS202002272_9,,RNAseq 029-033 in CCN201912131|Vip_3,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Inh L2-6 VIP PENK,Inh L2-6 VIP PENK,DNAm 10,CS202002272_10,,RNAseq 034-035 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Inh L3-5 VIP LOC101929231,Inh L3-5 VIP LOC101929231,DNAm 11,CS202002272_11,,RNAseq 036-039 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Inh L1-5 SST AHR,Inh L1-5 SST AHR,DNAm 12,CS202002272_12,,"RNAseq 040, 046-047, 050-052, 068 in CCN201912131",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Inh L5-6 SST DCN,Inh L5-6 SST DCN,DNAm 13,CS202002272_13,,RNAseq 041-045 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Inh L5-6 SST KIAA1644,Inh L5-6 SST KIAA1644,DNAm 14,CS202002272_14,,"RNAseq 048-049, 053-058 in CCN201912131",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Inh L2-6 PVALB SIAH3,Inh L2-6 PVALB SIAH3,DNAm 15,CS202002272_15,,"RNAseq 059-061, 063-067 in CCN201912131",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Inh L5-6 PVALB WNT16,Inh L5-6 PVALB WNT16,DNAm 16,CS202002272_16,,"RNAseq 062, 069-071 in CCN201912131",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Inh L1-6 PVALB COL15A1,Inh L1-6 PVALB COL15A1,DNAm 17,CS202002272_17,Chandelier,RNAseq 072 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Exc L1-3 LAMP5 LINC00507,Exc L1-3 LAMP5 LINC00507,DNAm 18,CS202002272_18,L2/3 IT,RNAseq 073-081 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Exc L2-3 RORB LOC101927281,Exc L2-3 RORB LOC101927281,DNAm 19,CS202002272_19,,RNAseq 079-080 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Exc L3-5 RORB COL22A1,Exc L3-5 RORB COL22A1,DNAm 20,CS202002272_20,,"RNAseq 082-086, 091 in CCN201912131",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Exc L5-6 THEMIS SERPINF1,Exc L5-6 THEMIS SERPINF1,DNAm 21,CS202002272_21,L6 IT,"RNAseq 084, 088, 092-095 in CCN201912131",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Exc L3-5 RORB LOC105374972,Exc L3-5 RORB LOC105374972,DNAm 22,CS202002272_22,,"RNAseq 087, 089-090 in CCN201912131",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Exc L5-6 THEMIS SMYD1,Exc L5-6 THEMIS SMYD1,DNAm 23,CS202002272_23,L6 IT Car3,RNAseq 096 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Exc L5-6 FEZF2 LOC105371833,Exc L5-6 FEZF2 LOC105371833,DNAm 24,CS202002272_24,L6 CT,RNAseq 097-102 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Exc L6 FEZF2 NPFFR2,Exc L6 FEZF2 NPFFR2,DNAm 25,CS202002272_25,L6b,RNAseq 103-108 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Exc L3-5 FEZF2 LOC101929352,Exc L3-5 FEZF2 LOC101929352,DNAm 26,CS202002272_26,L5 ET,RNAseq 109-111 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Exc L5-6 FEZF2 NPSR1-AS1,Exc L5-6 FEZF2 NPSR1-AS1,DNAm 27,CS202002272_27,L5/6 NP,RNAseq 112-116 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Oligo-OPC L1-6 OPALIN PLP1,Oligo-OPC L1-6 OPALIN PLP1,DNAm 28,CS202002272_28,Oligodendrocyte-OPC,RNAseq 117-121 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Astro L1-6 FGFR3 RNF219-AS1,Astro L1-6 FGFR3 RNF219-AS1,DNAm 29,CS202002272_29,Astrocyte,RNAseq 122-124 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Glia L1-5 NOSTRIN MECOM,Glia L1-5 NOSTRIN MECOM,DNAm 30,CS202002272_30,,RNAseq 125-126 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Micro L1-6 TYROBP CD74,Micro L1-6 TYROBP CD74,DNAm 31,CS202002272_31,Microglia-PVM,RNAseq 127 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Lamp5,Lamp5,DNAm 01-03,CS202002272_32,Lamp5,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Sncg,Sncg,DNAm 04-05,CS202002272_33,Sncg,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Vip,Vip,DNAm 06-11,CS202002272_34,Vip,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Sst,Sst,DNAm 12-14,CS202002272_35,Sst,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Pvalb,Pvalb,DNAm 15-17,CS202002272_36,Pvalb,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +L5 IT,L5 IT,"DNAm 20, 22",CS202002272_37,L5 IT,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Non-neuronal,Non-neuronal,DNAm 28-29,CS202002272_38,Non-neuronal,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Neuronal: GABAergic,Neuronal: GABAergic,DNAm 01-17,CS202002272_39,Neuronal: GABAergic,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Neuronal: Glutamatergic,Neuronal: Glutamatergic,DNAm 18-27,CS202002272_40,Neuronal: Glutamatergic,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Non-neural,Non-neural,DNAm 30-31,CS202002272_41,Non-neural,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +CGE/PoA,CGE/PoA,DNAm 01-11,CS202002272_42,CGE/PoA,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +MGE,MGE,DNAm 12-17,CS202002272_43,MGE,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +IT projecting,IT projecting,DNAm 18-23,CS202002272_44,IT projecting,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +Non-IT projecting,Non-IT projecting,DNAm 24-27,CS202002272_45,Non-IT projecting,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202002273.csv b/src/dendrograms/nomenclature_table_CCN202002273.csv new file mode 100644 index 00000000..8a202317 --- /dev/null +++ b/src/dendrograms/nomenclature_table_CCN202002273.csv @@ -0,0 +1,66 @@ +cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions +Inh L1-6 LAMP5 KIRREL,Inh L1-6 LAMP5 KIRREL,ATACseq 01,CS202002273_1,,RNAseq 001-006 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Inh L1 GAD1 SP8,Inh L1 GAD1 SP8,ATACseq 02,CS202002273_2,,RNAseq 007-013 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Inh L1 LAMP5 NDNF,Inh L1 LAMP5 NDNF,ATACseq 03,CS202002273_3,,RNAseq 014-015 in CCN201912131|Lamp5_5,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Inh L1 GAD1 NDST4,Inh L1 GAD1 NDST4,ATACseq 04,CS202002273_4,,RNAseq 016-018 in CCN201912131|Sncg_4,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Inh L1-5 VIP KCNJ2,Inh L1-5 VIP KCNJ2,ATACseq 05,CS202002273_5,,"RNAseq 019-020, 039 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Inh L1-6 VIP IQGAP2,Inh L1-6 VIP IQGAP2,ATACseq 06,CS202002273_6,,"RNAseq 021, 027-038 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Inh L1-3 VIP NPR3,Inh L1-3 VIP NPR3,ATACseq 07,CS202002273_7,,RNAseq 022-026 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Inh L1-6 SST NPY,Inh L1-6 SST NPY,ATACseq 08,CS202002273_8,Sst Chodl,RNAseq 040 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Inh L3-5 SST EDNRA,Inh L3-5 SST EDNRA,ATACseq 09,CS202002273_9,,"RNAseq 041-042, 044-046, 049 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Inh L5-6 SST LOC101929667,Inh L5-6 SST LOC101929667,ATACseq 10,CS202002273_10,,"RNAseq 043, 048, 055-057 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Inh L1-3 SST LOC392232,Inh L1-3 SST LOC392232,ATACseq 11,CS202002273_11,,"RNAseq 047, 068 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Inh L1-3 SST LOC105379168,Inh L1-3 SST LOC105379168,ATACseq 12,CS202002273_12,,RNAseq 050-052 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Inh L5-6 SST EBPL,Inh L5-6 SST EBPL,ATACseq 13,CS202002273_13,,"RNAseq 053-054, 058 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Inh L5-6 PVALB GULP1,Inh L5-6 PVALB GULP1,ATACseq 14,CS202002273_14,,"RNAseq 059, 069-071 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Inh L5-6 PVALB LINC01057,Inh L5-6 PVALB LINC01057,ATACseq 15,CS202002273_15,,"RNAseq 060, 062 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Inh L3-5 PVALB ISG20,Inh L3-5 PVALB ISG20,ATACseq 16,CS202002273_16,,RNAseq 061 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Inh L2-5 PVALB LOC105376919,Inh L2-5 PVALB LOC105376919,ATACseq 17,CS202002273_17,,RNAseq 063-067 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Inh L1-6 PVALB COL15A1,Inh L1-6 PVALB COL15A1,ATACseq 18,CS202002273_18,Chandelier,RNAseq 072 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Exc L2 LAMP5 KCNG3,Exc L2 LAMP5 KCNG3,ATACseq 19,CS202002273_19,,RNAseq 073 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Exc L2 LINC00507 ATP7B,Exc L2 LINC00507 ATP7B,ATACseq 20,CS202002273_20,,RNAseq 074 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Exc L2 LINC00507 GLRA3,Exc L2 LINC00507 GLRA3,ATACseq 21,CS202002273_21,,RNAseq 075 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Exc L2-3 RORB RTKN2,Exc L2-3 RORB RTKN2,ATACseq 22,CS202002273_22,,RNAseq 076 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Exc L2-3 LINC00507 DSG3,Exc L2-3 LINC00507 DSG3,ATACseq 23,CS202002273_23,,RNAseq 077 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Exc L3 LAMP5 MIR3976HG,Exc L3 LAMP5 MIR3976HG,ATACseq 24,CS202002273_24,,"RNAseq 078, 081 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Exc L2-3 RORB VIPR2,Exc L2-3 RORB VIPR2,ATACseq 25,CS202002273_25,,"RNAseq 079-080, 083 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Exc L3-5 RORB COL22A1,Exc L3-5 RORB COL22A1,ATACseq 26,CS202002273_26,,"RNAseq 082, 085-086, 091 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Exc L5-6 THEMIS TMEM18,Exc L5-6 THEMIS TMEM18,ATACseq 27,CS202002273_27,,"RNAseq 084, 088, 092 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Exc L3-5 RORB LOC105374972,Exc L3-5 RORB LOC105374972,ATACseq 28,CS202002273_28,,"RNAseq 087, 089-090 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Exc L6 THEMIS LINC00343,Exc L6 THEMIS LINC00343,ATACseq 29,CS202002273_29,L6 IT,RNAseq 093-095 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Exc L5-6 THEMIS SMYD1,Exc L5-6 THEMIS SMYD1,ATACseq 30,CS202002273_30,L6 IT Car3,RNAseq 096 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Exc L5-6 FEZF2 LOC105376596,Exc L5-6 FEZF2 LOC105376596,ATACseq 31,CS202002273_31,L6 CT,"RNAseq 097-099, 101-102 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Exc L5-6 FEZF2 C9orf135-AS1,Exc L5-6 FEZF2 C9orf135-AS1,ATACseq 32,CS202002273_32,,RNAseq 100 in CCN201912131|L6 CT_2,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Exc L6 FEZF2 NPFFR2,Exc L6 FEZF2 NPFFR2,ATACseq 33,CS202002273_33,L6b,RNAseq 103-108 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Exc L3-5 FEZF2 LOC101929352,Exc L3-5 FEZF2 LOC101929352,ATACseq 34,CS202002273_34,L5 ET,RNAseq 109-111 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Exc L5-6 FEZF2 NPSR1-AS1,Exc L5-6 FEZF2 NPSR1-AS1,ATACseq 35,CS202002273_35,L5/6 NP,RNAseq 112-116 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +OPC L1-6 PDGFRA COL20A1,OPC L1-6 PDGFRA COL20A1,ATACseq 36,CS202002273_36,OPC,RNAseq 118 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Oligo L2-6 OPALIN LOC101927459,Oligo L2-6 OPALIN LOC101927459,ATACseq 37,CS202002273_37,,"RNAseq 117, 120 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Oligo L3-6 SLC1A3 LOC100506725,Oligo L3-6 SLC1A3 LOC100506725,ATACseq 38,CS202002273_38,,"RNAseq 119, 121 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Astro L1-6 FGFR3 AQP1,Astro L1-6 FGFR3 AQP1,ATACseq 39,CS202002273_39,,"RNAseq 122, 124 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Astro L1 FGFR3 SERPINI2,Astro L1 FGFR3 SERPINI2,ATACseq 40,CS202002273_40,,RNAseq 123 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Glia L1-5 NOSTRIN MECOM,Glia L1-5 NOSTRIN MECOM,ATACseq 41,CS202002273_41,,RNAseq 125-126 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Micro L1-6 TYROBP CD74,Micro L1-6 TYROBP CD74,ATACseq 42,CS202002273_42,Microglia-PVM,RNAseq 127 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Lamp5,Lamp5,"ATACseq 01, 03",CS202002273_43,Lamp5,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Sncg,Sncg,"ATACseq 02, 04",CS202002273_44,Sncg,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Vip,Vip,ATACseq 05-07,CS202002273_45,Vip,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Sst,Sst,ATACseq 09-13,CS202002273_46,Sst,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Pvalb,Pvalb,ATACseq 14-18,CS202002273_47,Pvalb,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +L2/3 IT,L2/3 IT,ATACseq 19-25,CS202002273_48,L2/3 IT,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +L5 IT,L5 IT,ATACseq 26-28,CS202002273_49,L5 IT,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Astrocyte,Astrocyte,ATACseq 39-40,CS202002273_50,Astrocyte,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Non-neuronal,Non-neuronal,ATACseq 36-40,CS202002273_51,Non-neuronal,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Neuronal: GABAergic,Neuronal: GABAergic,ATACseq 01-18,CS202002273_52,Neuronal: GABAergic,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Neuronal: Glutamatergic,Neuronal: Glutamatergic,ATACseq 19-35,CS202002273_53,Neuronal: Glutamatergic,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Non-neural,Non-neural,ATACseq 41-42,CS202002273_54,Non-neural,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +CGE/PoA,CGE/PoA,ATACseq 01-07,CS202002273_55,CGE/PoA,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +MGE,MGE,ATACseq 08-18,CS202002273_56,MGE,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +IT projecting,IT projecting,ATACseq 19-30,CS202002273_57,IT projecting,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +Non-IT projecting,Non-IT projecting,ATACseq 31-35,CS202002273_58,Non-IT projecting,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202002274.csv b/src/dendrograms/nomenclature_table_CCN202002274.csv new file mode 100644 index 00000000..be368adb --- /dev/null +++ b/src/dendrograms/nomenclature_table_CCN202002274.csv @@ -0,0 +1,66 @@ +cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions +Inh LAMP5 COL5A2,Inh LAMP5 COL5A2,DNAm 01,CS202002274_1,,RNAseq 02-03 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Inh LAMP5 CTTNBP2,Inh LAMP5 CTTNBP2,DNAm 02,CS202002274_2,Lamp5 Lhx6,RNAseq 04 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Inh LAMP5 PBX3,Inh LAMP5 PBX3,DNAm 03,CS202002274_3,,RNAseq 05-06 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Inh GAD1 ZC4H2,Inh GAD1 ZC4H2,DNAm 04,CS202002274_4,,"RNAseq 07-12, 26 in CCN201912132",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Inh GAD1 THSD7B,Inh GAD1 THSD7B,DNAm 05,CS202002274_5,,RNAseq 13-14 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Inh VIP ARHGAP18,Inh VIP ARHGAP18,DNAm 06,CS202002274_6,,"RNAseq 15, 24-25 in CCN201912132",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Inh VIP LOC100397259,Inh VIP LOC100397259,DNAm 07,CS202002274_7,,RNAseq 16-17 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Inh VIP FIGN,Inh VIP FIGN,DNAm 08,CS202002274_8,,RNAseq 18-20 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Inh VIP DACH2,Inh VIP DACH2,DNAm 09,CS202002274_9,,RNAseq 21-23 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Inh SST ABI3BP,Inh SST ABI3BP,DNAm 10,CS202002274_10,,"RNAseq 01, 30-36, 47 in CCN201912132",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Inh SST COL11A1,Inh SST COL11A1,DNAm 11,CS202002274_11,,"RNAseq 27-29, 37, 40 in CCN201912132",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Inh SST AKAP2,Inh SST AKAP2,DNAm 12,CS202002274_12,,RNAseq 38-39 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Inh PVALB CDON,Inh PVALB CDON,DNAm 13,CS202002274_13,,"RNAseq 41, 45-46, 51 in CCN201912132",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Inh PVALB IGF2BP2,Inh PVALB IGF2BP2,DNAm 14,CS202002274_14,,RNAseq 42-44 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Inh PVALB EYS,Inh PVALB EYS,DNAm 15,CS202002274_15,,RNAseq 48-50 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Inh PVALB FAM19A4,Inh PVALB FAM19A4,DNAm 16,CS202002274_16,Chandelier,RNAseq 52 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Exc THEMIS ACTN2,Exc THEMIS ACTN2,DNAm 17,CS202002274_17,,RNAseq 53 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Exc RORB LOC108588466,Exc RORB LOC108588466,DNAm 18,CS202002274_18,L2/3 IT,RNAseq 54-56 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Exc THEMIS HS3ST5,Exc THEMIS HS3ST5,DNAm 19,CS202002274_19,L6 IT,RNAseq 57-60 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Exc RORB LOC108593203,Exc RORB LOC108593203,DNAm 20,CS202002274_20,,"RNAseq 61, 63 in CCN201912132",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Exc RORB ANTXR2,Exc RORB ANTXR2,DNAm 21,CS202002274_21,,"RNAseq 62, 64 in CCN201912132",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Exc RORB PAPSS2,Exc RORB PAPSS2,DNAm 22,CS202002274_22,,RNAseq 65 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Exc RORB TLL1,Exc RORB TLL1,DNAm 23,CS202002274_23,,RNAseq 66-67 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Exc RORB PCED1B,Exc RORB PCED1B,DNAm 24,CS202002274_24,,RNAseq 68 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Exc FEZF2 PIEZO2,Exc FEZF2 PIEZO2,DNAm 25,CS202002274_25,L5 ET,RNAseq 69-71 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Exc FEZF2 BMP5,Exc FEZF2 BMP5,DNAm 26,CS202002274_26,,RNAseq 72 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Exc FEZF2 NRP1,Exc FEZF2 NRP1,DNAm 27,CS202002274_27,,RNAseq 73 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Exc FEZF2 ARSJ,Exc FEZF2 ARSJ,DNAm 28,CS202002274_28,L6b,RNAseq 74 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Exc THEMIS CENPP,Exc THEMIS CENPP,DNAm 29,CS202002274_29,L6 IT Car3,RNAseq 75 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Exc FEZF2 TSHZ2,Exc FEZF2 TSHZ2,DNAm 30,CS202002274_30,L5/6 NP,RNAseq 76 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Glia SLC1A3 LOC103788313,Glia SLC1A3 LOC103788313,DNAm 31,CS202002274_31,,"RNAseq 77, 94 in CCN201912132",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Glia OPALIN ST18,Glia OPALIN ST18,DNAm 32,CS202002274_32,,"RNAseq 78, 83-84, 88-93 in CCN201912132",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Glia RORB SLC1A2,Glia RORB SLC1A2,DNAm 33,CS202002274_33,,RNAseq 79-87 in CCN201912132|Astrocyte+Endothelial,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Lamp5,Lamp5,DNAm 01-03,CS202002274_34,Lamp5,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Sncg,Sncg,DNAm 04-05,CS202002274_35,Sncg,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Vip,Vip,DNAm 06-09,CS202002274_36,Vip,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Sst,Sst,DNAm 10-12,CS202002274_37,Sst,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Pvalb,Pvalb,DNAm 13-16,CS202002274_38,Pvalb,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +L5 IT,L5 IT,DNAm 20-24,CS202002274_39,L5 IT,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +L6 CT,L6 CT,DNAm 26-27,CS202002274_40,L6 CT,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Neuronal: GABAergic,Neuronal: GABAergic,DNAm 01-16,CS202002274_41,Neuronal: GABAergic,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Neuronal: Glutamatergic,Neuronal: Glutamatergic,DNAm 17-30,CS202002274_42,Neuronal: Glutamatergic,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +CGE/PoA,CGE/PoA,DNAm 01-09,CS202002274_43,CGE/PoA,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +MGE,MGE,DNAm 10-16,CS202002274_44,MGE,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +IT projecting,IT projecting,"DNAm 17-24, 29",CS202002274_45,IT projecting,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +Non-IT projecting,Non-IT projecting,"DNAm 25-28, 30",CS202002274_46,Non-IT projecting,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202002275.csv b/src/dendrograms/nomenclature_table_CCN202002275.csv new file mode 100644 index 00000000..cc7083eb --- /dev/null +++ b/src/dendrograms/nomenclature_table_CCN202002275.csv @@ -0,0 +1,66 @@ +cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions +Inh LAMP5 KIT,Inh LAMP5 KIT,ATACseq 01,CS202002275_1,Lamp5,RNAseq 02-06 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, +Inh GAD1 THSD7B,Inh GAD1 THSD7B,ATACseq 02,CS202002275_2,Sncg,RNAseq 07-15 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, +Inh VIP LOC103791740,Inh VIP LOC103791740,ATACseq 03,CS202002275_3,Vip,RNAseq 16-26 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, +Inh SST ABI3BP,Inh SST ABI3BP,ATACseq 04,CS202002275_4,Sst,"RNAseq 01, 27-40, 47 in CCN201912132",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, +Inh PVALB MYO5B,Inh PVALB MYO5B,ATACseq 05,CS202002275_5,,"RNAseq 41-46, 48-51 in CCN201912132",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, +Inh PVALB FAM19A4,Inh PVALB FAM19A4,ATACseq 06,CS202002275_6,Chandelier,RNAseq 52 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, +Exc RORB NDST3,Exc RORB NDST3,ATACseq 07,CS202002275_7,,"RNAseq 53, 55-56 in CCN201912132",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, +Exc RORB LOC108588466,Exc RORB LOC108588466,ATACseq 08,CS202002275_8,,"RNAseq 54, 61 in CCN201912132",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, +Exc THEMIS HS3ST5,Exc THEMIS HS3ST5,ATACseq 09,CS202002275_9,L6 IT,RNAseq 58-60 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, +Exc RORB ANKRD27,Exc RORB ANKRD27,ATACseq 10,CS202002275_10,,RNAseq 62 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, +Exc RORB DCC,Exc RORB DCC,ATACseq 11,CS202002275_11,,"RNAseq 63, 65 in CCN201912132",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, +Exc RORB USH1C,Exc RORB USH1C,ATACseq 12,CS202002275_12,,RNAseq 64 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, +Exc RORB TLL1,Exc RORB TLL1,ATACseq 13,CS202002275_13,,RNAseq 66-67 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, +Exc RORB HACL1,Exc RORB HACL1,ATACseq 14,CS202002275_14,,RNAseq 68 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, +Exc FEZF2 PIEZO2,Exc FEZF2 PIEZO2,ATACseq 15,CS202002275_15,L5 ET,RNAseq 69-71 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, +Exc FEZF2 NRP1,Exc FEZF2 NRP1,ATACseq 16,CS202002275_16,L6 CT,RNAseq 72-73 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, +Exc FEZF2 ARSJ,Exc FEZF2 ARSJ,ATACseq 17,CS202002275_17,L6b,RNAseq 74 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, +Exc THEMIS NTNG2,Exc THEMIS NTNG2,ATACseq 18,CS202002275_18,L6 IT Car3,RNAseq 75 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, +Exc FEZF2 CRYM,Exc FEZF2 CRYM,ATACseq 19,CS202002275_19,L5/6 NP,RNAseq 76 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, +Oligo OPALIN ST18,Oligo OPALIN ST18,ATACseq 20,CS202002275_20,Oligodendrocyte,"RNAseq 77, 83-84 in CCN201912132",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, +OPC PDGFRA VCAN,OPC PDGFRA VCAN,ATACseq 21,CS202002275_21,OPC,RNAseq 78 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, +Astro RORB SLC1A2,Astro RORB SLC1A2,ATACseq 22,CS202002275_22,Astrocyte,RNAseq 79-82 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, +Glia SLC1A3 FLT1,Glia SLC1A3 FLT1,ATACseq 23,CS202002275_23,Non-neural,RNAseq 85-94 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, +Pvalb,Pvalb,ATACseq 05-06,CS202002275_24,Pvalb,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, +L2/3 IT,L2/3 IT,ATACseq 07-08,CS202002275_25,L2/3 IT,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, +L5 IT,L5 IT,ATACseq 10-14,CS202002275_26,L5 IT,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, +Oligodendrocyte-OPC,Oligodendrocyte-OPC,ATACseq 20-21,CS202002275_27,Oligodendrocyte-OPC,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, +Non-neuronal,Non-neuronal,ATACseq 20-22,CS202002275_28,Non-neuronal,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, +Neuronal: GABAergic,Neuronal: GABAergic,ATACseq 01-06,CS202002275_29,Neuronal: GABAergic,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, +Neuronal: Glutamatergic,Neuronal: Glutamatergic,ATACseq 07-19,CS202002275_30,Neuronal: Glutamatergic,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, +CGE/PoA,CGE/PoA,ATACseq 01-03,CS202002275_31,CGE/PoA,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, +MGE,MGE,ATACseq 04-06,CS202002275_32,MGE,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, +IT projecting,IT projecting,"ATACseq 07-14, 18",CS202002275_33,IT projecting,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, +Non-IT projecting,Non-IT projecting,"ATACseq 15-17, 19",CS202002275_34,Non-IT projecting,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202002276.csv b/src/dendrograms/nomenclature_table_CCN202002276.csv new file mode 100644 index 00000000..c617350b --- /dev/null +++ b/src/dendrograms/nomenclature_table_CCN202002276.csv @@ -0,0 +1,66 @@ +cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions +Lamp5 Chrna7,Lamp5 Chrna7,DNAm 01,CS202002276_1,,RNAseq 001-003 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +Lamp5 Ndnf,Lamp5 Ndnf,DNAm 02,CS202002276_2,,RNAseq 004-006 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +Lamp5 Ndnf,Lamp5 Ndnf,DNAm 03,CS202002276_3,,RNAseq 005 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +Lamp5 Asph,Lamp5 Asph,DNAm 04,CS202002276_4,,RNAseq 007-008 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +Sncg Frem1,Sncg Frem1,DNAm 05,CS202002276_5,Sncg,RNAseq 009-014 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +Vip Wnt5b,Vip Wnt5b,DNAm 06,CS202002276_6,,"RNAseq 015, 021-025 in CCN202002013",Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +Vip Tac2,Vip Tac2,DNAm 07,CS202002276_7,,RNAseq 016-018 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +Vip Crh,Vip Crh,DNAm 08,CS202002276_8,,"RNAseq 019-020, 026-027 in CCN202002013",Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +Sst Chodl,Sst Chodl,DNAm 09,CS202002276_9,Sst Chodl,RNAseq 028 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +Sst Scg5,Sst Scg5,DNAm 10,CS202002276_10,,"RNAseq 029-032, 041 in CCN202002013",Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +Sst Htr1a,Sst Htr1a,DNAm 11,CS202002276_11,,RNAseq 033 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +Sst Kirrel3,Sst Kirrel3,DNAm 12,CS202002276_12,,RNAseq 034-035 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +Sst Rbp4,Sst Rbp4,DNAm 13,CS202002276_13,,"RNAseq 036-037, 046-047 in CCN202002013",Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +Sst Pcdh11x,Sst Pcdh11x,DNAm 14,CS202002276_14,,RNAseq 038-040 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +Sst 9630002D21Rik,Sst 9630002D21Rik,DNAm 15,CS202002276_15,,RNAseq 042-045 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +Pvalb Tac1,Pvalb Tac1,DNAm 16,CS202002276_16,,RNAseq 048-053 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +Pvalb Gpr149,Pvalb Gpr149,DNAm 17,CS202002276_17,,RNAseq 050 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +Pvalb Plxnc1,Pvalb Plxnc1,DNAm 18,CS202002276_18,,RNAseq 054-055 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +Pvalb Vipr2,Pvalb Vipr2,DNAm 19,CS202002276_19,Chandelier,RNAseq 056-057 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +L2/3 IT Greb1l,L2/3 IT Greb1l,DNAm 20,CS202002276_20,L2/3 IT,RNAseq 058-060 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +L5 IT Rspo1_1,L5 IT Rspo1_1,DNAm 21,CS202002276_21,,RNAseq 061 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +L5 IT Rspo1_2,L5 IT Rspo1_2,DNAm 22,CS202002276_22,,RNAseq 062 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +L5 IT S100b,L5 IT S100b,DNAm 23,CS202002276_23,,RNAseq 063-064 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +L5/6 IT Arhgap15,L5/6 IT Arhgap15,DNAm 24,CS202002276_24,,"RNAseq 065, 067 in CCN202002013",Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +L5 IT Pld5_2,L5 IT Pld5_2,DNAm 25,CS202002276_25,,RNAseq 066 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +L6 IT_2,L6 IT_2,DNAm 26,CS202002276_26,,RNAseq 068 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +L6 IT Car3,L6 IT Car3,DNAm 27,CS202002276_27,L6 IT Car3,RNAseq 069 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +L5 ET,L5 ET,DNAm 28,CS202002276_28,L5 ET,RNAseq 070-073 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +L5/6 NP CT Cdh18,L5/6 NP CT Cdh18,DNAm 29,CS202002276_29,,"RNAseq 074, 079-080 in CCN202002013",Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +L6 CT Gpr139,L6 CT Gpr139,DNAm 30,CS202002276_30,,RNAseq 075 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +L6 CT Cpa6,L6 CT Cpa6,DNAm 31,CS202002276_31,,RNAseq 076 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +L6 CT Grp,L6 CT Grp,DNAm 32,CS202002276_32,,RNAseq 077 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +L6 CT Pou3f2,L6 CT Pou3f2,DNAm 33,CS202002276_33,,RNAseq 078 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +L6b Ctgf,L6b Ctgf,DNAm 34,CS202002276_34,L6b,RNAseq 081-085 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +L5/6 NP Lypd1,L5/6 NP Lypd1,DNAm 35,CS202002276_35,L5/6 NP,RNAseq 086-088 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +OPC Pdgfra,OPC Pdgfra,DNAm 36,CS202002276_36,OPC,RNAseq 091 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +Astro Rorb Prex2,Astro Rorb Prex2,DNAm 37,CS202002276_37,Astrocyte,RNAseq 92-94 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +Oligo Plp1,Oligo Plp1,DNAm 38,CS202002276_38,Oligodendrocyte,"RNAseq 095, 097-102 in CCN202002013",Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +VLMC Lama1,VLMC Lama1,DNAm 39,CS202002276_39,,"RNAseq 104-105, 107 in CCN202002013",Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +VLMC Bnc2,VLMC Bnc2,DNAm 40,CS202002276_40,,"RNAseq 106, 108-110 in CCN202002013",Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +SMC-Peri,SMC-Peri,DNAm 41,CS202002276_41,SMC,RNAseq 111-112 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +Micro-PVM Inpp5d,Micro-PVM Inpp5d,DNAm 42,CS202002276_42,Microglia-PVM,"RNAseq 113, 115-116 in CCN202002013",Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +VLMC,VLMC,DNAm 43,CS202002276_43,VLMC,RNAseq 104-110 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +Lamp5,Lamp5,DNAm 01-04,CS202002276_44,Lamp5,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +Vip,Vip,DNAm 06-08,CS202002276_45,Vip,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +Sst,Sst,DNAm 10-15,CS202002276_46,Sst,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +Pvalb,Pvalb,DNAm 16-19,CS202002276_47,Pvalb,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +L4/5 IT,L4/5 IT,DNAm 21-22,CS202002276_48,L4/5 IT,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +L5 IT,L5 IT,"DNAm 23, 25",CS202002276_49,L5 IT,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +L6 IT,L6 IT,"DNAm 24, 26",CS202002276_50,L6 IT,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +L6 CT,L6 CT,DNAm 29-33,CS202002276_51,L6 CT,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +Oligodendrocyte-OPC,Oligodendrocyte-OPC,"DNAm 36, 38",CS202002276_52,Oligodendrocyte-OPC,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +Non-neuronal,Non-neuronal,DNAm 36-38,CS202002276_53,Non-neuronal,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +Neuronal: GABAergic,Neuronal: GABAergic,DNAm 01-19,CS202002276_54,Neuronal: GABAergic,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +Neuronal: Glutamatergic,Neuronal: Glutamatergic,DNAm 20-35,CS202002276_55,Neuronal: Glutamatergic,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +Non-neural,Non-neural,DNAm 39-43,CS202002276_56,Non-neural,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +CGE/PoA,CGE/PoA,DNAm 01-08,CS202002276_57,CGE/PoA,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +MGE,MGE,DNAm 09-19,CS202002276_58,MGE,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +IT projecting,IT projecting,DNAm 20-27,CS202002276_59,IT projecting,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +Non-IT projecting,Non-IT projecting,DNAm 28-35,CS202002276_60,Non-IT projecting,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202002277.csv b/src/dendrograms/nomenclature_table_CCN202002277.csv new file mode 100644 index 00000000..5fec5374 --- /dev/null +++ b/src/dendrograms/nomenclature_table_CCN202002277.csv @@ -0,0 +1,66 @@ +cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions +Lamp5 Ndnf,Lamp5 Ndnf,ATACseq 01,CS202002277_1,,RNAseq 001-005 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +Lamp5 Arhgdib,Lamp5 Arhgdib,ATACseq 02,CS202002277_2,,RNAseq 006 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +Lamp5 Slc35d3,Lamp5 Slc35d3,ATACseq 03,CS202002277_3,,RNAseq 007 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +Lamp5 Lhx6,Lamp5 Lhx6,ATACseq 04,CS202002277_4,Lamp5 Lhx6,RNAseq 008 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +Sncg,Sncg,ATACseq 05,CS202002277_5,Sncg,RNAseq 009-014 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +Vip Hcls1,Vip Hcls1,ATACseq 06,CS202002277_6,,RNAseq 015-018 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +Vip Lipg,Vip Lipg,ATACseq 07,CS202002277_7,,"RNAseq 019-020, 026-027 in CCN202002013",Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +Vip Gcnt4,Vip Gcnt4,ATACseq 08,CS202002277_8,,RNAseq 021-022 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +Vip Chat,Vip Chat,ATACseq 09,CS202002277_9,,RNAseq 023-025 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +Sst Chodl,Sst Chodl,ATACseq 10,CS202002277_10,Sst Chodl,RNAseq 028 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +Sst Myh8,Sst Myh8,ATACseq 11,CS202002277_11,,RNAseq 029-033 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +Sst Man1a,Sst Man1a,ATACseq 12,CS202002277_12,,"RNAseq 034-035, 038-041 in CCN202002013",Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +Sst Stk33,Sst Stk33,ATACseq 13,CS202002277_13,,"RNAseq 036-037, 042-047 in CCN202002013",Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +Pvalb Ntf3,Pvalb Ntf3,ATACseq 14,CS202002277_14,,RNAseq 048-053 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +Pvalb Tac1,Pvalb Tac1,ATACseq 15,CS202002277_15,,RNAseq 054-055 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +Pvalb Vipr2,Pvalb Vipr2,ATACseq 16,CS202002277_16,Chandelier,RNAseq 056-057 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +L2/3_1,L2/3_1,ATACseq 17,CS202002277_17,L2/3 IT,RNAseq 058-060 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +L4,L4,ATACseq 18,CS202002277_18,L4/5 IT,RNAseq 061 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +L5 IT_1,L5 IT_1,ATACseq 19,CS202002277_19,,RNAseq 062 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +L5 IT_2,L5 IT_2,ATACseq 20,CS202002277_20,,RNAseq 063-065 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +L6 IT,L6 IT,ATACseq 21,CS202002277_21,L6 IT,RNAseq 066-068 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +L5 ET,L5 ET,ATACseq 22,CS202002277_22,L5 ET,RNAseq 070-073 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +L5/6 NP,L5/6 NP,ATACseq 23,CS202002277_23,L5/6 NP,"RNAseq 074, 086-088 in CCN202002013",Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +L6 CT,L6 CT,ATACseq 24,CS202002277_24,L6 CT,RNAseq 075-081 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +OPC,OPC,ATACseq 25,CS202002277_25,OPC,RNAseq 091 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +Astro,Astro,ATACseq 26,CS202002277_26,Astrocyte,RNAseq 092-094 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +Oligo,Oligo,ATACseq 27,CS202002277_27,Oligodendrocyte,RNAseq 095-012 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +Endo,Endo,ATACseq 28,CS202002277_28,Endothelial,RNAseq 103 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +VLMC,VLMC,ATACseq 29,CS202002277_29,VLMC,RNAseq 104-110 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +SMC-Peri,SMC-Peri,ATACseq 30,CS202002277_30,,RNAseq 111-112 in CCN202002013|SMC+Pericyte,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +Micro-PVM,Micro-PVM,ATACseq 31,CS202002277_31,Microglia-PVM,RNAseq 113-116 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +Lamp5,Lamp5,ATACseq 01-03,CS202002277_32,Lamp5,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +Vip,Vip,ATACseq 06-09,CS202002277_33,Vip,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +Sst,Sst,ATACseq 11-13,CS202002277_34,Sst,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +Pvalb,Pvalb,ATACseq 14-16,CS202002277_35,Pvalb,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +L5 IT,L5 IT,ATACseq 19-20,CS202002277_36,L5 IT,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +Oligodendrocyte-OPC,Oligodendrocyte-OPC,"ATACseq 25, 27",CS202002277_37,Oligodendrocyte-OPC,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +Non-neuronal,Non-neuronal,ATACseq 25-27,CS202002277_38,Non-neuronal,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +Neuronal: GABAergic,Neuronal: GABAergic,ATACseq 01-16,CS202002277_39,Neuronal: GABAergic,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +Neuronal: Glutamatergic,Neuronal: Glutamatergic,ATACseq 17-24,CS202002277_40,Neuronal: Glutamatergic,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +Non-neural,Non-neural,ATACseq 28-31,CS202002277_41,Non-neural,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +CGE/PoA,CGE/PoA,ATACseq 01-09,CS202002277_42,CGE/PoA,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +MGE,MGE,ATACseq 10-16,CS202002277_43,MGE,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +IT projecting,IT projecting,ATACseq 17-21,CS202002277_44,IT projecting,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +Non-IT projecting,Non-IT projecting,ATACseq 22-24,CS202002277_45,Non-IT projecting,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, +,,,,,,,,,,,,, \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202103210.csv b/src/dendrograms/nomenclature_table_CCN202103210.csv new file mode 100644 index 00000000..b1981da5 --- /dev/null +++ b/src/dendrograms/nomenclature_table_CCN202103210.csv @@ -0,0 +1,126 @@ 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+Pvalb_1,Pvalb_1,MERFISH 40,CS202103210_40,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +Pvalb_12,Pvalb_12,MERFISH 41,CS202103210_41,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +Pvalb_11,Pvalb_11,MERFISH 42,CS202103210_42,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +L23_IT_1,L23_IT_1,MERFISH 43,CS202103210_43,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +L23_IT_2,L23_IT_2,MERFISH 44,CS202103210_44,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +L23_IT_5,L23_IT_5,MERFISH 45,CS202103210_45,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +L23_IT_3,L23_IT_3,MERFISH 46,CS202103210_46,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor 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+Oligo_2,Oligo_2,MERFISH 87,CS202103210_87,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +Oligo_1,Oligo_1,MERFISH 88,CS202103210_88,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +Endo,Endo,MERFISH 89,CS202103210_89,Endothelial,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +VLMC,VLMC,MERFISH 90,CS202103210_90,VLMC,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +SMC,SMC,MERFISH 91,CS202103210_91,SMC,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +Peri,Peri,MERFISH 92,CS202103210_92,Pericyte,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +Micro_1,Micro_1,MERFISH 93,CS202103210_93,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +Micro_2,Micro_2,MERFISH 94,CS202103210_94,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +PVM,PVM,MERFISH 95,CS202103210_95,PVM,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +Lamp5,Lamp5,MERFISH 01-08,CS202103210_96,Lamp5,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +Sncg,Sncg,MERFISH 10-11,CS202103210_97,Sncg,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +Vip,Vip,"MERFISH 09, 12-21",CS202103210_98,Vip,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +Sst,Sst,MERFISH 22-30,CS202103210_99,Sst,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +Pvalb,Pvalb,MERFISH 31-42,CS202103210_100,Pvalb,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +Chandelier,Chandelier,MERFISH 41-42,CS202103210_101,Chandelier,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +L2/3 IT,L2/3 IT,MERFISH 43-47,CS202103210_102,L2/3 IT,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +L4/5 IT (MOp),L4/5 IT (MOp),"MERFISH 48-49, 52-54",CS202103210_103,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +L4/5 IT (SSp),L4/5 IT (SSp),MERFISH 50-51,CS202103210_104,,,Meng Zhang,10.1101/2020.06.04.105700,neocortex,UBERON_0001950,CCN202103210,Mouse,MERFISH, +L5 IT,L5 IT,MERFISH 55-58,CS202103210_105,L5 IT,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +L6 IT,L6 IT,MERFISH 59-61,CS202103210_106,L6 IT,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +L5 PT,L5 PT,MERFISH 63-67,CS202103210_107,L5 ET,L5 PT|L5 CF,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +L5 PT (Non-MY-projecting),L5 PT (Non-MY-projecting),MERFISH 64-67,CS202103210_108,,L5 ET (Non-MY-projecting),Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +L6 CT,L6 CT,MERFISH 68-76,CS202103210_109,L6 CT,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +L6b,L6b,MERFISH 77-79,CS202103210_110,L6b,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +L5/6 NP,L5/6 NP,MERFISH 80-81,CS202103210_111,L5/6 NP,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +Astrocyte,Astrocyte,MERFISH 82-84,CS202103210_112,Astrocyte,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +Oligodendrocyte,Oligodendrocyte,MERFISH 86-88,CS202103210_113,Oligodendrocyte,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +Microglia,Microglia,MERFISH 93-94,CS202103210_114,Microglia,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +Microglia-PVM,Microglia-PVM,MERFISH 93-95,CS202103210_115,Microglia-PVM,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +CGE/PoA,CGE/PoA,MERFISH 01-21,CS202103210_116,CGE/PoA,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +MGE,MGE,MERFISH 22-42,CS202103210_117,MGE,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +GABAergic,GABAergic,MERFISH 01-42,CS202103210_118,Neuronal: GABAergic,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +IT projecting,IT projecting,MERFISH 43-61,CS202103210_119,IT projecting,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +Non-IT projecting,Non-IT projecting,MERFISH 62-81,CS202103210_120,Non-IT projecting,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +Glutamatergic,Glutamatergic,MERFISH 43-81,CS202103210_121,Neuronal: Glutamatergic,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +Non-Neuronal,Non-Neuronal,MERFISH 82-88,CS202103210_122,Non-neuronal,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +Non-Neural,Non-Neural,MERFISH 89-95,CS202103210_123,Non-neural,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +Oligodendrocyte-OPC,Oligodendrocyte-OPC,MERFISH 86-88,CS202103210_124,Oligodendrocyte-OPC,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, +L4/5 IT,L4/5 IT,"MERFISH 48-49, 52-54",CS202103210_125,L4/5 IT,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202103220.csv b/src/dendrograms/nomenclature_table_CCN202103220.csv new file mode 100644 index 00000000..b1566a15 --- /dev/null +++ b/src/dendrograms/nomenclature_table_CCN202103220.csv @@ -0,0 +1,66 @@ +cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions +L2/3 IT,L2/3 IT,EpiRetroSeq 01,CS202103220_01,L2/3 IT,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, +L4,L4,EpiRetroSeq 02,CS202103220_02,L4/5 IT,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, +L5 IT,L5 IT,EpiRetroSeq 03,CS202103220_03,L5 IT,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, +L6 IT,L6 IT,EpiRetroSeq 04,CS202103220_04,L6 IT,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, +L5 ET,L5 ET,EpiRetroSeq 05,CS202103220_05,L5 ET,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, +L6 CT,L6 CT,EpiRetroSeq 06,CS202103220_06,L6 CT,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, +L6b,L6b,EpiRetroSeq 07,CS202103220_07,L6b,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, +NP,NP,EpiRetroSeq 08,CS202103220_08,L5/6 NP,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, +CLA,CLA,EpiRetroSeq 09,CS202103220_09,,Claustrum,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, +Inhibitory,Inhibitory,EpiRetroSeq 10,CS202103220_10,Neuronal: GABAergic,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, +Others,Others,EpiRetroSeq 11,CS202103220_11,,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, +L5 ET (Cluster 0),L5 ET (Cluster 0),EpiRetroSeq 12,CS202103220_12,,RNAseq 070 in CCN202002013|L5 ET (MY-projecting),Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, +L5 ET (Cluster 2),L5 ET (Cluster 2),EpiRetroSeq 13,CS202103220_13,,RNAseq 070 in CCN202002013,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, +L5 ET (Cluster 3),L5 ET (Cluster 3),EpiRetroSeq 14,CS202103220_14,,RNAseq 070 in CCN202002013,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, +L5 ET (Cluster 5),L5 ET (Cluster 5),EpiRetroSeq 15,CS202103220_15,,RNAseq 071 in CCN202002013,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, +L5 ET (Cluster 4),L5 ET (Cluster 4),EpiRetroSeq 16,CS202103220_16,,RNAseq 070-072 in CCN202002013,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, +L5 ET (Cluster 1),L5 ET (Cluster 1),EpiRetroSeq 17,CS202103220_17,,RNAseq 072-073 in CCN202002013,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, +IT projecting,IT projecting,"EpiRetroSeq 01-04, 09",CS202103220_18,IT 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a/src/dendrograms/nomenclature_table_CCN202103220.csv +++ b/src/dendrograms/nomenclature_table_CCN202103220.csv @@ -19,48 +19,4 @@ L5 ET (Cluster 1),L5 ET (Cluster 1),EpiRetroSeq 17,CS202103220_17,,RNAseq 072-07 IT projecting,IT projecting,"EpiRetroSeq 01-04, 09",CS202103220_18,IT projecting,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, Non-IT projecting,Non-IT projecting,"EpiRetroSeq 05-08, 12-17",CS202103220_19,Non-IT projecting,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, Glutamatergic,Glutamatergic,"EpiRetroSeq 01-09, 12-17",CS202103220_20,Neuronal: Glutamatergic,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, -L5 ET (Non-MY-projecting),L5 ET (Non-MY-projecting),EpiRetroSeq 13-17,CS202103220_21,,L5 ET (Non-MY-projecting),Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor 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newline at end of file From d6a4333e99d65e4ba5b0378421a7d2da7e53c610 Mon Sep 17 00:00:00 2001 From: Shawn Tan <76212760+shawntanzk@users.noreply.github.com> Date: Tue, 20 Jul 2021 21:29:39 +0100 Subject: [PATCH 04/17] 20 July update for cell_set_nomenclature.xlsx 20 July update notes: added child cell set accessions deleted most of the subclass cell sets for the integrated (cross-species) taxonomy --- src/dendrograms/cell_set_nomenclature.xlsx | Bin 134160 -> 147669 bytes 1 file changed, 0 insertions(+), 0 deletions(-) diff --git a/src/dendrograms/cell_set_nomenclature.xlsx b/src/dendrograms/cell_set_nomenclature.xlsx index 624aa01f56dcbc39e87d3cdb993f4f429a7a39c7..a861b3e4179defff561960d5f8d7f4ed97c6a645 100644 GIT binary patch delta 134214 zcmZ6yWmubC&^6kY;_gmxFYd+N-9mxl#R|op8;9avti|2kp}4yjEAH-oLZA2j&Ueng zT**Cq?LD(*t=Y+y=p?uqU-$|hSonwGlZQj7H*X5!hT-u6r41e|@6Q%5{(WH_N@RAE zc^p~96N%{U%x%cLay%gKH_bb7Nonx5dD#&8uP?8^bAtNn?p z&9=%fVLGh{2$kUh)9R@r%C%l9JgbR>NU1i^?L{)m@rnTXysb}Z=e`(m9{)nqbh 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z0u|;VpP}^l2$ri5gh0TB+28y$utBgi=b*gY)$?Bu^3V`Sco!K2_BRC}kOppSb_N+M z*7O{d8B3=Mwj{wF+fNSV!Xm*0_Qg3cC)tCPBZA!}mAOUA$-eztnQSn@Er#EV+oXg* z96A1MYmOJ#pofPHl-PA8C^I+h6Pq&&Y!FC#(4PzT_$9+Qv0chwAvJW#GdPkA!l8WZ zPw*@yK4g~U#4@UYR?MhFImwm54W3Oks2KK(8kjO7kYR(>!4x0q-qj&8Y==5j7;8;R zAwGfkM4=p59t4z`=db%eAiyktKqK)p8CD+w73BHrUIy4v%zr4tI826(MnKPzQ;d*d zI}xA;aD~kHhpxUjMux3X1AFGLYh{~1*YbRp40~4%DuAs3Q6?APB*QM!fIC;(YT%yM zQI`BR8Ma3iYDBKF`}@7es^C4)9XZKS`(#+02AJZ}fXb1hiNB|uz!cOJg3Z=|3Suv* zLK(5?ATCl?P$vOtO;*~^&D9V^NkwWHANUVL1A+LFgJ?kh9}IAz A@c;k- From 151b7569c948b51d2a4b092eeace982a70014c48 Mon Sep 17 00:00:00 2001 From: Shawn Tan <76212760+shawntanzk@users.noreply.github.com> Date: Tue, 20 Jul 2021 21:59:40 +0100 Subject: [PATCH 05/17] 20 July update for nomenclature tables Notes: Added Child accession Updated with latest file --- .../nomenclature_table_CCN201912131.csv | 105 +++---- .../nomenclature_table_CCN201912132.csv | 81 ++--- .../nomenclature_table_CCN202002011.csv | 49 +-- .../nomenclature_table_CCN202002012.csv | 71 ++--- .../nomenclature_table_CCN202002013.csv | 282 +++++++++--------- .../nomenclature_table_CCN202002270.csv | 39 +-- .../nomenclature_table_CCN202002271.csv | 59 +--- .../nomenclature_table_CCN202002272.csv | 49 +-- .../nomenclature_table_CCN202002273.csv | 40 ++- .../nomenclature_table_CCN202002274.csv | 46 +-- .../nomenclature_table_CCN202002275.csv | 54 +--- .../nomenclature_table_CCN202002276.csv | 40 ++- .../nomenclature_table_CCN202002277.csv | 49 +-- .../nomenclature_table_CCN202103210.csv | 61 ++-- .../nomenclature_table_CCN202103220.csv | 9 +- 15 files changed, 446 insertions(+), 588 deletions(-) diff --git a/src/dendrograms/nomenclature_table_CCN201912131.csv b/src/dendrograms/nomenclature_table_CCN201912131.csv index bc6a38ab..291908d2 100644 --- a/src/dendrograms/nomenclature_table_CCN201912131.csv +++ b/src/dendrograms/nomenclature_table_CCN201912131.csv @@ -126,55 +126,56 @@ Astro L1-6 FGFR3 PLCG1,Astro L1-6 FGFR3 PLCG1,RNAseq 124,CS201912131_124,,Astro_ Endo L2-5 NOSTRIN SRGN,Endo L2-5 NOSTRIN SRGN,RNAseq 125,CS201912131_125,Endothelial,Endo,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, VLMC L1-5 PDGFRA COLEC12,VLMC L1-5 PDGFRA COLEC12,RNAseq 126,CS201912131_126,VLMC,VLMC,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, Micro L1-6 TYROBP CD74,Micro L1-6 TYROBP CD74,RNAseq 127,CS201912131_127,Microglia-PVM,Microglia/PVM,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Lamp5,Lamp5,"RNAseq 001-008, 014-015",CS201912131_128,Lamp5,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Sncg,Sncg,"RNAseq 009-013, 016-018",CS201912131_129,Sncg,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Vip,Vip,RNAseq 019-039,CS201912131_130,Vip,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Sst,Sst,RNAseq 041-058,CS201912131_131,Sst,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Pvalb,Pvalb,RNAseq 059-072,CS201912131_132,Pvalb,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -L2/3 IT,L2/3 IT,RNAseq 073-080,CS201912131_133,L2/3 IT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -L5 IT,L5 IT,RNAseq 081-092,CS201912131_134,L5 IT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -L6 IT,L6 IT,RNAseq 093-095,CS201912131_135,L6 IT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -L6 CT,L6 CT,RNAseq 097-102,CS201912131_136,L6 CT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -L6b,L6b,RNAseq 103-108,CS201912131_137,L6b,L6b,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -L5 ET,L5 ET,RNAseq 109-111,CS201912131_138,L5 ET,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -L5/6 NP,L5/6 NP,RNAseq 112-116,CS201912131_139,L5/6 NP,L5/6 NP,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Oligo,Oligo,"RNAseq 117, 119-121",CS201912131_140,Oligodendrocyte,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Astro,Astro,RNAseq 122-124,CS201912131_142,Astrocyte,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -CGE/PoA,CGE/PoA,RNAseq 001-039,CS201912131_143,CGE/PoA,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -MGE,MGE,RNAseq 040-072,CS201912131_144,MGE,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -IT projecting,IT projecting,RNAseq 073-096,CS201912131_145,IT projecting,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Non-IT projecting,Non-IT projecting,RNAseq 097-116,CS201912131_146,Non-IT projecting,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Oligo-OPC,Oligo-OPC,RNAseq 116-120,CS201912131_147,Oligodendrocyte-OPC,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Other NN,Other NN,RNAseq 125-127,CS201912131_148,Non-neural,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -GABAergic,GABAergic,RNAseq 001-072,CS201912131_149,Neuronal: GABAergic,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Glutamatergic,Glutamatergic,RNAseq 073-116,CS201912131_150,Neuronal: Glutamatergic,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Non-Neuronal,Non-Neuronal,RNAseq 117-124,CS201912131_151,Non-neuronal,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Lamp5_C2,Lamp5_C2,RNAseq 002-004,CS201912131_152,,Lamp5_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Lamp5_C3,Lamp5_C3,RNAseq 005-006,CS201912131_153,Lamp5 Lhx6,Lamp5_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Lamp5_C4,Lamp5_C4,RNAseq 007-008,CS201912131_154,,Lamp5_4,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Sncg_C1,Sncg_C1,RNAseq 009-010,CS201912131_155,,Sncg_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Sncg_C3,Sncg_C3,RNAseq 012-013,CS201912131_156,,Sncg_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Lamp5_C5,Lamp5_C5,RNAseq 014-015,CS201912131_157,,Lamp5_5,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Sncg_C4,Sncg_C4,RNAseq 016-018,CS201912131_158,,Sncg_4,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Vip_C1,Vip_C1,RNAseq 019-021,CS201912131_159,,Vip_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Vip_C2,Vip_C2,"RNAseq 022-028, 039",CS201912131_160,,Vip_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Vip_C3,Vip_C3,RNAseq 029-033,CS201912131_161,,Vip_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Vip_C4,Vip_C4,RNAseq 034-038,CS201912131_162,,Vip_4,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Sst_C1,Sst_C1,RNAseq 041-042,CS201912131_163,,Sst_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Sst_C2,Sst_C2,RNAseq 043-045,CS201912131_164,,Sst_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Sst_C3,Sst_C3,"RNAseq 046-047, 050-052",CS201912131_165,,Sst_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Sst_C4,Sst_C4,RNAseq 048-049,CS201912131_166,,Sst_4,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Sst_C5,Sst_C5,RNAseq 053-054,CS201912131_167,,Sst_5,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Sst_C6,Sst_C6,RNAseq 055-057,CS201912131_168,,Sst_6,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Pvalb_C1,Pvalb_C1,RNAseq 059-068,CS201912131_169,,Pvalb_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Pvalb_C2,Pvalb_C2,RNAseq 069-071,CS201912131_170,,Pvalb_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -L2/3 IT(i),L2/3 IT(i),RNAseq 073-078,CS201912131_171,,L2/3 IT,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -L5 IT_C1,L5 IT_C1,RNAseq 079-086,CS201912131_172,,L5 IT_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -L5 IT_C2,L5 IT_C2,"RNAseq 087, 089-090",CS201912131_173,,L5 IT_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -L6 IT_C2,L6 IT_C2,"RNAseq 088, 095",CS201912131_174,,L6 IT_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -L5 IT_C3,L5 IT_C3,RNAseq 091-092,CS201912131_175,,L5 IT_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -L6 IT_C1,L6 IT_C1,RNAseq 093-094,CS201912131_176,,L6 IT_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -L6 CT_C1,L6 CT_C1,"RNAseq 097-099, 101-102",CS201912131_177,,L6 CT_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -L5 ET_C1,L5 ET_C1,RNAseq 109-110,CS201912131_178,,L5 ET_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Oligo_C2,Oligo_C2,RNAseq 120-121,CS201912131_179,,Oligo_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Astro_C1,Astro_C1,RNAseq 122-123,CS201912131_180,,Astro_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, \ No newline at end of file +Lamp5,Lamp5,"RNAseq 001-008, 014-015",CS201912131_128,Lamp5,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_1|CS201912131_2|CS201912131_3|CS201912131_4|CS201912131_5|CS201912131_6|CS201912131_7|CS201912131_8|CS201912131_14|CS201912131_15 +Sncg,Sncg,"RNAseq 009-013, 016-018",CS201912131_129,Sncg,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_9|CS201912131_10|CS201912131_11|CS201912131_12|CS201912131_13|CS201912131_16|CS201912131_17|CS201912131_18 +Vip,Vip,RNAseq 019-039,CS201912131_130,Vip,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_19|CS201912131_20|CS201912131_21|CS201912131_22|CS201912131_23|CS201912131_24|CS201912131_25|CS201912131_26|CS201912131_27|CS201912131_28|CS201912131_29|CS201912131_30|CS201912131_31|CS201912131_32|CS201912131_33|CS201912131_34|CS201912131_35|CS201912131_36|CS201912131_37|CS201912131_38|CS201912131_39 +Sst,Sst,RNAseq 041-058,CS201912131_131,Sst,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_41|CS201912131_42|CS201912131_43|CS201912131_44|CS201912131_45|CS201912131_46|CS201912131_47|CS201912131_48|CS201912131_49|CS201912131_50|CS201912131_51|CS201912131_52|CS201912131_53|CS201912131_54|CS201912131_55|CS201912131_56|CS201912131_57|CS201912131_58 +Pvalb,Pvalb,RNAseq 059-072,CS201912131_132,Pvalb,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_59|CS201912131_60|CS201912131_61|CS201912131_62|CS201912131_63|CS201912131_64|CS201912131_65|CS201912131_66|CS201912131_67|CS201912131_68|CS201912131_69|CS201912131_70|CS201912131_71|CS201912131_72 +L2/3 IT,L2/3 IT,RNAseq 073-080,CS201912131_133,L2/3 IT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_73|CS201912131_74|CS201912131_75|CS201912131_76|CS201912131_77|CS201912131_78|CS201912131_80|CS201912131_81 +L5 IT,L5 IT,RNAseq 081-092,CS201912131_134,L5 IT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_82|CS201912131_83|CS201912131_84|CS201912131_85|CS201912131_86|CS201912131_87|CS201912131_88|CS201912131_89|CS201912131_90|CS201912131_91|CS201912131_92|CS201912131_93 +L6 IT,L6 IT,RNAseq 093-095,CS201912131_135,L6 IT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_94|CS201912131_95|CS201912131_96 +L6 CT,L6 CT,RNAseq 097-102,CS201912131_136,L6 CT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_98|CS201912131_99|CS201912131_100|CS201912131_101|CS201912131_102|CS201912131_103 +L6b,L6b,RNAseq 103-108,CS201912131_137,L6b,L6b,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_104|CS201912131_105|CS201912131_106|CS201912131_107|CS201912131_108|CS201912131_109 +L5 ET,L5 ET,RNAseq 109-111,CS201912131_138,L5 ET,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_110|CS201912131_111|CS201912131_112 +L5/6 NP,L5/6 NP,RNAseq 112-116,CS201912131_139,L5/6 NP,L5/6 NP,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_113|CS201912131_114|CS201912131_115|CS201912131_116|CS201912131_117 +Oligo,Oligo,"RNAseq 117, 119-121",CS201912131_140,Oligodendrocyte,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_79|CS201912131_119|CS201912131_120|CS201912131_121 +Astro,Astro,RNAseq 122-124,CS201912131_142,Astrocyte,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_122|CS201912131_123|CS201912131_124 +CGE/PoA,CGE/PoA,RNAseq 001-039,CS201912131_143,CGE/PoA,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_1|CS201912131_2|CS201912131_3|CS201912131_4|CS201912131_5|CS201912131_6|CS201912131_7|CS201912131_8|CS201912131_9|CS201912131_10|CS201912131_11|CS201912131_12|CS201912131_13|CS201912131_14|CS201912131_15|CS201912131_16|CS201912131_17|CS201912131_18|CS201912131_19|CS201912131_20|CS201912131_21|CS201912131_22|CS201912131_23|CS201912131_24|CS201912131_25|CS201912131_26|CS201912131_27|CS201912131_28|CS201912131_29|CS201912131_30|CS201912131_31|CS201912131_32|CS201912131_33|CS201912131_34|CS201912131_35|CS201912131_36|CS201912131_37|CS201912131_38|CS201912131_39 +MGE,MGE,RNAseq 040-072,CS201912131_144,MGE,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_40|CS201912131_41|CS201912131_42|CS201912131_43|CS201912131_44|CS201912131_45|CS201912131_46|CS201912131_47|CS201912131_48|CS201912131_49|CS201912131_50|CS201912131_51|CS201912131_52|CS201912131_53|CS201912131_54|CS201912131_55|CS201912131_56|CS201912131_57|CS201912131_58|CS201912131_59|CS201912131_60|CS201912131_61|CS201912131_62|CS201912131_63|CS201912131_64|CS201912131_65|CS201912131_66|CS201912131_67|CS201912131_68|CS201912131_69|CS201912131_70|CS201912131_71|CS201912131_72 +IT projecting,IT projecting,RNAseq 073-096,CS201912131_145,IT projecting,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_73|CS201912131_74|CS201912131_75|CS201912131_76|CS201912131_77|CS201912131_78|CS201912131_80|CS201912131_81|CS201912131_82|CS201912131_83|CS201912131_84|CS201912131_85|CS201912131_86|CS201912131_87|CS201912131_88|CS201912131_89|CS201912131_90|CS201912131_91|CS201912131_92|CS201912131_93|CS201912131_94|CS201912131_95|CS201912131_96|CS201912131_97 +Non-IT projecting,Non-IT projecting,RNAseq 097-116,CS201912131_146,Non-IT projecting,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_98|CS201912131_99|CS201912131_100|CS201912131_101|CS201912131_102|CS201912131_103|CS201912131_104|CS201912131_105|CS201912131_106|CS201912131_107|CS201912131_108|CS201912131_109|CS201912131_110|CS201912131_111|CS201912131_112|CS201912131_113|CS201912131_114|CS201912131_115|CS201912131_116|CS201912131_117 +Oligo-OPC,Oligo-OPC,RNAseq 116-120,CS201912131_147,Oligodendrocyte-OPC,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_79|CS201912131_117|CS201912131_118|CS201912131_119|CS201912131_120 +Other NN,Other NN,RNAseq 125-127,CS201912131_148,Non-neural,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_125|CS201912131_126|CS201912131_127 +GABAergic,GABAergic,RNAseq 001-072,CS201912131_149,Neuronal: GABAergic,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_1|CS201912131_2|CS201912131_3|CS201912131_4|CS201912131_5|CS201912131_6|CS201912131_7|CS201912131_8|CS201912131_9|CS201912131_10|CS201912131_11|CS201912131_12|CS201912131_13|CS201912131_14|CS201912131_15|CS201912131_16|CS201912131_17|CS201912131_18|CS201912131_19|CS201912131_20|CS201912131_21|CS201912131_22|CS201912131_23|CS201912131_24|CS201912131_25|CS201912131_26|CS201912131_27|CS201912131_28|CS201912131_29|CS201912131_30|CS201912131_31|CS201912131_32|CS201912131_33|CS201912131_34|CS201912131_35|CS201912131_36|CS201912131_37|CS201912131_38|CS201912131_39|CS201912131_40|CS201912131_41|CS201912131_42|CS201912131_43|CS201912131_44|CS201912131_45|CS201912131_46|CS201912131_47|CS201912131_48|CS201912131_49|CS201912131_50|CS201912131_51|CS201912131_52|CS201912131_53|CS201912131_54|CS201912131_55|CS201912131_56|CS201912131_57|CS201912131_58|CS201912131_59|CS201912131_60|CS201912131_61|CS201912131_62|CS201912131_63|CS201912131_64|CS201912131_65|CS201912131_66|CS201912131_67|CS201912131_68|CS201912131_69|CS201912131_70|CS201912131_71|CS201912131_72 +Glutamatergic,Glutamatergic,RNAseq 073-116,CS201912131_150,Neuronal: Glutamatergic,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_73|CS201912131_74|CS201912131_75|CS201912131_76|CS201912131_77|CS201912131_78|CS201912131_80|CS201912131_81|CS201912131_82|CS201912131_83|CS201912131_84|CS201912131_85|CS201912131_86|CS201912131_87|CS201912131_88|CS201912131_89|CS201912131_90|CS201912131_91|CS201912131_92|CS201912131_93|CS201912131_94|CS201912131_95|CS201912131_96|CS201912131_97|CS201912131_98|CS201912131_99|CS201912131_100|CS201912131_101|CS201912131_102|CS201912131_103|CS201912131_104|CS201912131_105|CS201912131_106|CS201912131_107|CS201912131_108|CS201912131_109|CS201912131_110|CS201912131_111|CS201912131_112|CS201912131_113|CS201912131_114|CS201912131_115|CS201912131_116|CS201912131_117 +Non-Neuronal,Non-Neuronal,RNAseq 117-124,CS201912131_151,Non-neuronal,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_79|CS201912131_118|CS201912131_119|CS201912131_120|CS201912131_121|CS201912131_122|CS201912131_123|CS201912131_124 +Lamp5_C2,Lamp5_C2,RNAseq 002-004,CS201912131_152,,Lamp5_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_2|CS201912131_3|CS201912131_4 +Lamp5_C3,Lamp5_C3,RNAseq 005-006,CS201912131_153,Lamp5 Lhx6,Lamp5_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_5|CS201912131_6 +Lamp5_C4,Lamp5_C4,RNAseq 007-008,CS201912131_154,,Lamp5_4,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_7|CS201912131_8 +Sncg_C1,Sncg_C1,RNAseq 009-010,CS201912131_155,,Sncg_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_9|CS201912131_10 +Sncg_C3,Sncg_C3,RNAseq 012-013,CS201912131_156,,Sncg_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_12|CS201912131_13 +Lamp5_C5,Lamp5_C5,RNAseq 014-015,CS201912131_157,,Lamp5_5,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_14|CS201912131_15 +Sncg_C4,Sncg_C4,RNAseq 016-018,CS201912131_158,,Sncg_4,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_16|CS201912131_17|CS201912131_18 +Vip_C1,Vip_C1,RNAseq 019-021,CS201912131_159,,Vip_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_19|CS201912131_20|CS201912131_21 +Vip_C2,Vip_C2,"RNAseq 022-028, 039",CS201912131_160,,Vip_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_22|CS201912131_23|CS201912131_24|CS201912131_25|CS201912131_26|CS201912131_27|CS201912131_28|CS201912131_39 +Vip_C3,Vip_C3,RNAseq 029-033,CS201912131_161,,Vip_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_29|CS201912131_30|CS201912131_31|CS201912131_32|CS201912131_33 +Vip_C4,Vip_C4,RNAseq 034-038,CS201912131_162,,Vip_4,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_34|CS201912131_35|CS201912131_36|CS201912131_37|CS201912131_38 +Sst_C1,Sst_C1,RNAseq 041-042,CS201912131_163,,Sst_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_41|CS201912131_42 +Sst_C2,Sst_C2,RNAseq 043-045,CS201912131_164,,Sst_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_43|CS201912131_44|CS201912131_45 +Sst_C3,Sst_C3,"RNAseq 046-047, 050-052",CS201912131_165,,Sst_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_46|CS201912131_47|CS201912131_50|CS201912131_51|CS201912131_52 +Sst_C4,Sst_C4,RNAseq 048-049,CS201912131_166,,Sst_4,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_48|CS201912131_49 +Sst_C5,Sst_C5,RNAseq 053-054,CS201912131_167,,Sst_5,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_53|CS201912131_54 +Sst_C6,Sst_C6,RNAseq 055-057,CS201912131_168,,Sst_6,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_55|CS201912131_56|CS201912131_57 +Pvalb_C1,Pvalb_C1,RNAseq 059-068,CS201912131_169,,Pvalb_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_59|CS201912131_60|CS201912131_61|CS201912131_62|CS201912131_63|CS201912131_64|CS201912131_65|CS201912131_66|CS201912131_67|CS201912131_68 +Pvalb_C2,Pvalb_C2,RNAseq 069-071,CS201912131_170,,Pvalb_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_69|CS201912131_70|CS201912131_71 +L2/3 IT(i),L2/3 IT(i),RNAseq 073-078,CS201912131_171,,L2/3 IT,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_73|CS201912131_74|CS201912131_75|CS201912131_76|CS201912131_77|CS201912131_78 +L5 IT_C1,L5 IT_C1,RNAseq 079-086,CS201912131_172,,L5 IT_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_80|CS201912131_81|CS201912131_82|CS201912131_83|CS201912131_84|CS201912131_85|CS201912131_86|CS201912131_87 +L5 IT_C2,L5 IT_C2,"RNAseq 087, 089-090",CS201912131_173,,L5 IT_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_88|CS201912131_90|CS201912131_91 +L6 IT_C2,L6 IT_C2,"RNAseq 088, 095",CS201912131_174,,L6 IT_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_89|CS201912131_96 +L5 IT_C3,L5 IT_C3,RNAseq 091-092,CS201912131_175,,L5 IT_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_92|CS201912131_93 +L6 IT_C1,L6 IT_C1,RNAseq 093-094,CS201912131_176,,L6 IT_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_94|CS201912131_95 +L6 CT_C1,L6 CT_C1,"RNAseq 097-099, 101-102",CS201912131_177,,L6 CT_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_98|CS201912131_99|CS201912131_100|CS201912131_102|CS201912131_103 +L5 ET_C1,L5 ET_C1,RNAseq 109-110,CS201912131_178,,L5 ET_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_110|CS201912131_111 +Oligo_C2,Oligo_C2,RNAseq 120-121,CS201912131_179,,Oligo_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_120|CS201912131_121 +Astro_C1,Astro_C1,RNAseq 122-123,CS201912131_180,,Astro_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_122|CS201912131_123 +,All cells,RNAseq 001-127,CS201912131_181,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_1|CS201912131_2|CS201912131_3|CS201912131_4|CS201912131_5|CS201912131_6|CS201912131_7|CS201912131_8|CS201912131_9|CS201912131_10|CS201912131_11|CS201912131_12|CS201912131_13|CS201912131_14|CS201912131_15|CS201912131_16|CS201912131_17|CS201912131_18|CS201912131_19|CS201912131_20|CS201912131_21|CS201912131_22|CS201912131_23|CS201912131_24|CS201912131_25|CS201912131_26|CS201912131_27|CS201912131_28|CS201912131_29|CS201912131_30|CS201912131_31|CS201912131_32|CS201912131_33|CS201912131_34|CS201912131_35|CS201912131_36|CS201912131_37|CS201912131_38|CS201912131_39|CS201912131_40|CS201912131_41|CS201912131_42|CS201912131_43|CS201912131_44|CS201912131_45|CS201912131_46|CS201912131_47|CS201912131_48|CS201912131_49|CS201912131_50|CS201912131_51|CS201912131_52|CS201912131_53|CS201912131_54|CS201912131_55|CS201912131_56|CS201912131_57|CS201912131_58|CS201912131_59|CS201912131_60|CS201912131_61|CS201912131_62|CS201912131_63|CS201912131_64|CS201912131_65|CS201912131_66|CS201912131_67|CS201912131_68|CS201912131_69|CS201912131_70|CS201912131_71|CS201912131_72|CS201912131_73|CS201912131_74|CS201912131_75|CS201912131_76|CS201912131_77|CS201912131_78|CS201912131_79|CS201912131_80|CS201912131_81|CS201912131_82|CS201912131_83|CS201912131_84|CS201912131_85|CS201912131_86|CS201912131_87|CS201912131_88|CS201912131_89|CS201912131_90|CS201912131_91|CS201912131_92|CS201912131_93|CS201912131_94|CS201912131_95|CS201912131_96|CS201912131_97|CS201912131_98|CS201912131_99|CS201912131_100|CS201912131_101|CS201912131_102|CS201912131_103|CS201912131_104|CS201912131_105|CS201912131_106|CS201912131_107|CS201912131_108|CS201912131_109|CS201912131_110|CS201912131_111|CS201912131_112|CS201912131_113|CS201912131_114|CS201912131_115|CS201912131_116|CS201912131_117|CS201912131_118|CS201912131_119|CS201912131_120|CS201912131_121|CS201912131_122|CS201912131_123|CS201912131_124|CS201912131_125|CS201912131_126|CS201912131_127 \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN201912132.csv b/src/dendrograms/nomenclature_table_CCN201912132.csv index a448f9a9..aa63836e 100644 --- a/src/dendrograms/nomenclature_table_CCN201912132.csv +++ b/src/dendrograms/nomenclature_table_CCN201912132.csv @@ -93,43 +93,44 @@ VLMC SLC1A3 CEMIP,VLMC SLC1A3 CEMIP,RNAseq 91,CS201912132_91,,,Fenna Krienen,10. VLMC SLC1A3 SLC13A3,VLMC SLC1A3 SLC13A3,RNAseq 92,CS201912132_92,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, VLMC SLC1A3 SLC47A1,VLMC SLC1A3 SLC47A1,RNAseq 93,CS201912132_93,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, Micro TYROBP LOC103788313,Micro TYROBP LOC103788313,RNAseq 94,CS201912132_94,Microglia-PVM,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Lamp5,Lamp5,RNAseq 02-07,CS201912132_95,Lamp5,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Sncg,Sncg,RNAseq 08-14,CS201912132_96,Sncg,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Vip,Vip,RNAseq 15-25,CS201912132_97,Vip,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Sst,Sst,"RNAseq 27-40, 47",CS201912132_98,Sst,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Pvalb,Pvalb,"RNAseq 41-46, 48-52",CS201912132_99,Pvalb,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -L2/3 IT,L2/3 IT,RNAseq 53-56,CS201912132_100,L2/3 IT,L2/3 IT,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -L5 IT,L5 IT,"RNAseq 57-58, 61-68",CS201912132_101,L5 IT,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -L6 IT,L6 IT,RNAseq 59-60,CS201912132_102,L6 IT,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -L5 ET,L5 ET,RNAseq 69-71,CS201912132_103,L5 ET,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -L6 CT,L6 CT,RNAseq 72-73,CS201912132_104,L6 CT,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Oligo,Oligo,"RNAseq 77, 83-84",CS201912132_105,Oligodendrocyte,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Astro,Astro,RNAseq 79-82,CS201912132_106,Astrocyte,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Endo,Endo,RNAseq 85-87,CS201912132_107,Endothelial,Endo,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Peri,Peri,RNAseq 88-89,CS201912132_108,Pericyte,Peri,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -VLMC,VLMC,RNAseq 90-93,CS201912132_109,VLMC,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -MGE,MGE,"RNAseq 01, 27-52",CS201912132_110,MGE,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -CGE/PoA,CGE/PoA,RNAseq 02-26,CS201912132_111,CGE/PoA,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -IT projecting,IT projecting,"RNAseq 53-68, 75",CS201912132_112,IT projecting,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Non-IT projecting,Non-IT projecting,RNAseq 69-76,CS201912132_113,Non-IT projecting,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Oligo-OPC,Oligo-OPC,"RNAseq 77-78, 83-84",CS201912132_114,Oligodendrocyte-OPC,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Other NN,Other NN,RNAseq 85-94,CS201912132_115,Non-neural,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -GABAergic,GABAergic,RNAseq 01-52,CS201912132_116,Neuronal: GABAergic,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Glutamatergic,Glutamatergic,RNAseq 53-76,CS201912132_117,Neuronal: Glutamatergic,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Non-Neuronal,Non-Neuronal,RNAseq 77-84,CS201912132_118,Non-neuronal,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Sst Chodl(i),Sst Chodl(i),"RNAseq 01, 30",CS201912132_119,,Sst Chodl,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Lamp5_C2,Lamp5_C2,RNAseq 05-06,CS201912132_120,,Lamp5_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Sncg_C1,Sncg_C1,"RNAseq 09, 12",CS201912132_121,,Sncg_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Sncg_C3,Sncg_C3,RNAseq 10-11,CS201912132_122,,Sncg_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Sncg_C4,Sncg_C4,RNAseq 13-14,CS201912132_123,,Sncg_4,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Vip_C4,Vip_C4,"RNAseq 15, 25",CS201912132_124,,Vip_4,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Vip_C2,Vip_C2,"RNAseq 16-18, 24",CS201912132_125,,Vip_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Vip_C1,Vip_C1,RNAseq 19-20,CS201912132_126,,Vip_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Vip_C3,Vip_C3,RNAseq 21-23,CS201912132_127,,Vip_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Sst_C3,Sst_C3,"RNAseq 31-36, 40, 47",CS201912132_128,,Sst_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Pvalb_C1,Pvalb_C1,"RNAseq 41-46, 48-50",CS201912132_129,,Pvalb_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -L5 IT_C1,L5 IT_C1,"RNAseq 57-58, 61-64",CS201912132_130,,L5 IT_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -L5 IT_C2,L5 IT_C2,RNAseq 66-68,CS201912132_131,,L5 IT_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -L5 ET_C1,L5 ET_C1,RNAseq 69-70,CS201912132_132,,L5 ET_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Astro_C2,Astro_C2,RNAseq 79-81,CS201912132_133,,Astro_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -VLMC(i),VLMC(i),RNAseq 90-92,CS201912132_134,,VLMC,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, \ No newline at end of file +Lamp5,Lamp5,RNAseq 02-07,CS201912132_95,Lamp5,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_2|CS201912132_3|CS201912132_4|CS201912132_5|CS201912132_6|CS201912132_7 +Sncg,Sncg,RNAseq 08-14,CS201912132_96,Sncg,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_8|CS201912132_9|CS201912132_10|CS201912132_11|CS201912132_12|CS201912132_13|CS201912132_14 +Vip,Vip,RNAseq 15-25,CS201912132_97,Vip,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_15|CS201912132_16|CS201912132_17|CS201912132_18|CS201912132_19|CS201912132_20|CS201912132_21|CS201912132_22|CS201912132_23|CS201912132_24|CS201912132_25 +Sst,Sst,"RNAseq 27-40, 47",CS201912132_98,Sst,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_27|CS201912132_28|CS201912132_29|CS201912132_30|CS201912132_31|CS201912132_32|CS201912132_33|CS201912132_34|CS201912132_35|CS201912132_36|CS201912132_37|CS201912132_38|CS201912132_39|CS201912132_40|CS201912132_47 +Pvalb,Pvalb,"RNAseq 41-46, 48-52",CS201912132_99,Pvalb,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_41|CS201912132_42|CS201912132_43|CS201912132_44|CS201912132_45|CS201912132_46|CS201912132_48|CS201912132_49|CS201912132_50|CS201912132_51|CS201912132_52 +L2/3 IT,L2/3 IT,RNAseq 53-56,CS201912132_100,L2/3 IT,L2/3 IT,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_53|CS201912132_54|CS201912132_55|CS201912132_56 +L5 IT,L5 IT,"RNAseq 57-58, 61-68",CS201912132_101,L5 IT,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_57|CS201912132_58|CS201912132_61|CS201912132_62|CS201912132_63|CS201912132_64|CS201912132_65|CS201912132_66|CS201912132_67|CS201912132_68 +L6 IT,L6 IT,RNAseq 59-60,CS201912132_102,L6 IT,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_59|CS201912132_60 +L5 ET,L5 ET,RNAseq 69-71,CS201912132_103,L5 ET,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_70|CS201912132_71|CS201912132_72 +L6 CT,L6 CT,RNAseq 72-73,CS201912132_104,L6 CT,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_73|CS201912132_74 +Oligo,Oligo,"RNAseq 77, 83-84",CS201912132_105,Oligodendrocyte,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_69|CS201912132_83|CS201912132_84 +Astro,Astro,RNAseq 79-82,CS201912132_106,Astrocyte,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_79|CS201912132_80|CS201912132_81|CS201912132_82 +Endo,Endo,RNAseq 85-87,CS201912132_107,Endothelial,Endo,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_85|CS201912132_86|CS201912132_87 +Peri,Peri,RNAseq 88-89,CS201912132_108,Pericyte,Peri,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_88|CS201912132_89 +VLMC,VLMC,RNAseq 90-93,CS201912132_109,VLMC,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_90|CS201912132_91|CS201912132_92|CS201912132_93 +MGE,MGE,"RNAseq 01, 27-52",CS201912132_110,MGE,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_1|CS201912132_27|CS201912132_28|CS201912132_29|CS201912132_30|CS201912132_31|CS201912132_32|CS201912132_33|CS201912132_34|CS201912132_35|CS201912132_36|CS201912132_37|CS201912132_38|CS201912132_39|CS201912132_40|CS201912132_41|CS201912132_42|CS201912132_43|CS201912132_44|CS201912132_45|CS201912132_46|CS201912132_47|CS201912132_48|CS201912132_49|CS201912132_50|CS201912132_51|CS201912132_52 +CGE/PoA,CGE/PoA,RNAseq 02-26,CS201912132_111,CGE/PoA,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_2|CS201912132_3|CS201912132_4|CS201912132_5|CS201912132_6|CS201912132_7|CS201912132_8|CS201912132_9|CS201912132_10|CS201912132_11|CS201912132_12|CS201912132_13|CS201912132_14|CS201912132_15|CS201912132_16|CS201912132_17|CS201912132_18|CS201912132_19|CS201912132_20|CS201912132_21|CS201912132_22|CS201912132_23|CS201912132_24|CS201912132_25|CS201912132_26 +IT projecting,IT projecting,"RNAseq 53-68, 75",CS201912132_112,IT projecting,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_53|CS201912132_54|CS201912132_55|CS201912132_56|CS201912132_57|CS201912132_58|CS201912132_59|CS201912132_60|CS201912132_61|CS201912132_62|CS201912132_63|CS201912132_64|CS201912132_65|CS201912132_66|CS201912132_67|CS201912132_68|CS201912132_76 +Non-IT projecting,Non-IT projecting,RNAseq 69-76,CS201912132_113,Non-IT projecting,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_70|CS201912132_71|CS201912132_72|CS201912132_73|CS201912132_74|CS201912132_75|CS201912132_76|CS201912132_77 +Oligo-OPC,Oligo-OPC,"RNAseq 77-78, 83-84",CS201912132_114,Oligodendrocyte-OPC,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_69|CS201912132_78|CS201912132_83|CS201912132_84 +Other NN,Other NN,RNAseq 85-94,CS201912132_115,Non-neural,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_85|CS201912132_86|CS201912132_87|CS201912132_88|CS201912132_89|CS201912132_90|CS201912132_91|CS201912132_92|CS201912132_93|CS201912132_94 +GABAergic,GABAergic,RNAseq 01-52,CS201912132_116,Neuronal: GABAergic,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_1|CS201912132_2|CS201912132_3|CS201912132_4|CS201912132_5|CS201912132_6|CS201912132_7|CS201912132_8|CS201912132_9|CS201912132_10|CS201912132_11|CS201912132_12|CS201912132_13|CS201912132_14|CS201912132_15|CS201912132_16|CS201912132_17|CS201912132_18|CS201912132_19|CS201912132_20|CS201912132_21|CS201912132_22|CS201912132_23|CS201912132_24|CS201912132_25|CS201912132_26|CS201912132_27|CS201912132_28|CS201912132_29|CS201912132_30|CS201912132_31|CS201912132_32|CS201912132_33|CS201912132_34|CS201912132_35|CS201912132_36|CS201912132_37|CS201912132_38|CS201912132_39|CS201912132_40|CS201912132_41|CS201912132_42|CS201912132_43|CS201912132_44|CS201912132_45|CS201912132_46|CS201912132_47|CS201912132_48|CS201912132_49|CS201912132_50|CS201912132_51|CS201912132_52 +Glutamatergic,Glutamatergic,RNAseq 53-76,CS201912132_117,Neuronal: Glutamatergic,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_53|CS201912132_54|CS201912132_55|CS201912132_56|CS201912132_57|CS201912132_58|CS201912132_59|CS201912132_60|CS201912132_61|CS201912132_62|CS201912132_63|CS201912132_64|CS201912132_65|CS201912132_66|CS201912132_67|CS201912132_68|CS201912132_70|CS201912132_71|CS201912132_72|CS201912132_73|CS201912132_74|CS201912132_75|CS201912132_76|CS201912132_77 +Non-Neuronal,Non-Neuronal,RNAseq 77-84,CS201912132_118,Non-neuronal,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_69|CS201912132_78|CS201912132_79|CS201912132_80|CS201912132_81|CS201912132_82|CS201912132_83|CS201912132_84 +Sst Chodl(i),Sst Chodl(i),"RNAseq 01, 30",CS201912132_119,,Sst Chodl,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_1|CS201912132_30 +Lamp5_C2,Lamp5_C2,RNAseq 05-06,CS201912132_120,,Lamp5_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_5|CS201912132_6 +Sncg_C1,Sncg_C1,"RNAseq 09, 12",CS201912132_121,,Sncg_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_9|CS201912132_12 +Sncg_C3,Sncg_C3,RNAseq 10-11,CS201912132_122,,Sncg_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_10|CS201912132_11 +Sncg_C4,Sncg_C4,RNAseq 13-14,CS201912132_123,,Sncg_4,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_13|CS201912132_14 +Vip_C4,Vip_C4,"RNAseq 15, 25",CS201912132_124,,Vip_4,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_15|CS201912132_25 +Vip_C2,Vip_C2,"RNAseq 16-18, 24",CS201912132_125,,Vip_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_16|CS201912132_17|CS201912132_18|CS201912132_24 +Vip_C1,Vip_C1,RNAseq 19-20,CS201912132_126,,Vip_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_19|CS201912132_20 +Vip_C3,Vip_C3,RNAseq 21-23,CS201912132_127,,Vip_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_21|CS201912132_22|CS201912132_23 +Sst_C3,Sst_C3,"RNAseq 31-36, 40, 47",CS201912132_128,,Sst_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_31|CS201912132_32|CS201912132_33|CS201912132_34|CS201912132_35|CS201912132_36|CS201912132_40|CS201912132_47 +Pvalb_C1,Pvalb_C1,"RNAseq 41-46, 48-50",CS201912132_129,,Pvalb_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_41|CS201912132_42|CS201912132_43|CS201912132_44|CS201912132_45|CS201912132_46|CS201912132_48|CS201912132_49|CS201912132_50 +L5 IT_C1,L5 IT_C1,"RNAseq 57-58, 61-64",CS201912132_130,,L5 IT_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_57|CS201912132_58|CS201912132_61|CS201912132_62|CS201912132_63|CS201912132_64 +L5 IT_C2,L5 IT_C2,RNAseq 66-68,CS201912132_131,,L5 IT_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_66|CS201912132_67|CS201912132_68 +L5 ET_C1,L5 ET_C1,RNAseq 69-70,CS201912132_132,,L5 ET_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_70|CS201912132_71 +Astro_C2,Astro_C2,RNAseq 79-81,CS201912132_133,,Astro_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_79|CS201912132_80|CS201912132_81 +VLMC(i),VLMC(i),RNAseq 90-92,CS201912132_134,,VLMC,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_90|CS201912132_91|CS201912132_92 +,All cells,RNAseq 01-94,CS201912132_135,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_1|CS201912132_2|CS201912132_3|CS201912132_4|CS201912132_5|CS201912132_6|CS201912132_7|CS201912132_8|CS201912132_9|CS201912132_10|CS201912132_11|CS201912132_12|CS201912132_13|CS201912132_14|CS201912132_15|CS201912132_16|CS201912132_17|CS201912132_18|CS201912132_19|CS201912132_20|CS201912132_21|CS201912132_22|CS201912132_23|CS201912132_24|CS201912132_25|CS201912132_26|CS201912132_27|CS201912132_28|CS201912132_29|CS201912132_30|CS201912132_31|CS201912132_32|CS201912132_33|CS201912132_34|CS201912132_35|CS201912132_36|CS201912132_37|CS201912132_38|CS201912132_39|CS201912132_40|CS201912132_41|CS201912132_42|CS201912132_43|CS201912132_44|CS201912132_45|CS201912132_46|CS201912132_47|CS201912132_48|CS201912132_49|CS201912132_50|CS201912132_51|CS201912132_52|CS201912132_53|CS201912132_54|CS201912132_55|CS201912132_56|CS201912132_57|CS201912132_58|CS201912132_59|CS201912132_60|CS201912132_61|CS201912132_62|CS201912132_63|CS201912132_64|CS201912132_65|CS201912132_66|CS201912132_67|CS201912132_68|CS201912132_69|CS201912132_70|CS201912132_71|CS201912132_72|CS201912132_73|CS201912132_74|CS201912132_75|CS201912132_76|CS201912132_77|CS201912132_78|CS201912132_79|CS201912132_80|CS201912132_81|CS201912132_82|CS201912132_83|CS201912132_84|CS201912132_85|CS201912132_86|CS201912132_87|CS201912132_88|CS201912132_89|CS201912132_90|CS201912132_91|CS201912132_92|CS201912132_93|CS201912132_94 \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202002011.csv b/src/dendrograms/nomenclature_table_CCN202002011.csv index 3417dde7..f6f9d280 100644 --- a/src/dendrograms/nomenclature_table_CCN202002011.csv +++ b/src/dendrograms/nomenclature_table_CCN202002011.csv @@ -84,27 +84,28 @@ Lamp5 Lhx6 [level 1],Lamp5 Lhx6 [level 1],SCF 82,CS202002011_82,,SCF-ENS1-C6_6,E Sncg [level 1],Sncg [level 1],SCF 83,CS202002011_83,,SCF-ENS1-C6_5,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, Vip Chat_Crispld2 [level 1],Vip Chat_Crispld2 [level 1],SCF 84,CS202002011_84,,SCF-ENS1-C6_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, Vip Gpc3_Htr1f_lgfbp6 [level 1],Vip Gpc3_Htr1f_lgfbp6 [level 1],SCF 85,CS202002011_85,,SCF-ENS1-C6_3,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Glutamatergic,Glutamatergic,SCF 01-34,CS202002011_86,Neuronal: Glutamatergic,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -IT projecting,IT projecting,SCF 01-13,CS202002011_87,IT projecting,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Non-IT projecting,Non-IT projecting,SCF 14-34,CS202002011_88,Non-IT projecting,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -GABAergic,GABAergic,SCF 35-56,CS202002011_89,Neuronal: GABAergic,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -CGE/PoA,CGE/PoA,SCF 45-56,CS202002011_90,CGE/PoA,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -MGE,MGE,SCF 35-44,CS202002011_91,MGE,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L2/3 IT,L2/3 IT,SCF 01-05,CS202002011_92,L2/3 IT,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L4/5 IT,L4/5 IT,SCF 06-08,CS202002011_93,L4/5 IT,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L5 IT,L5 IT,SCF 09-11,CS202002011_94,L5 IT,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L5 ET,L5 ET,SCF 14-16,CS202002011_95,L5 ET,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L6 CT,L6 CT,SCF 17-25,CS202002011_96,L6 CT,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L6 CT Cpa6,L6 CT Cpa6,"SCF 17-20, 22",CS202002011_97,,RNAseq 076 in CCN202002013,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L6 CT Nxph2 Pou3f2,L6 CT Nxph2 Pou3f2,SCF 23-24,CS202002011_98,,RNAseq 078 in CCN202002013,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L5/6 NP,L5/6 NP,SCF 26-29,CS202002011_99,L5/6 NP,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L5 NP Slc17a8,L5 NP Slc17a8,SCF 27-28,CS202002011_100,,RNAseq 086-087 in CCN202002013,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L6b,L6b,SCF 30-34,CS202002011_101,L6b,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L6b Shisa6,L6b Shisa6,SCF 30-31,CS202002011_102,,RNAseq 082-083 in CCN202002013,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L6b Kcnip1,L6b Kcnip1,SCF 33-34,CS202002011_103,,RNAseq 085 in CCN202002013,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Pvalb,Pvalb,SCF 35-38,CS202002011_104,Pvalb,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Sst,Sst,SCF 39-44,CS202002011_105,Sst,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Sst Crhr2,Sst Crhr2,SCF 40-41,CS202002011_106,,RNAseq 036-037 in CCN202002013,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Lamp5,Lamp5,SCF 45-48,CS202002011_107,Lamp5,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Sncg,Sncg,SCF 49-50,CS202002011_108,Sncg,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Vip,Vip,SCF 51-56,CS202002011_109,Vip,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, \ No newline at end of file +Glutamatergic,Glutamatergic,SCF 01-34,CS202002011_86,Neuronal: Glutamatergic,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_1|CS202002011_2|CS202002011_3|CS202002011_4|CS202002011_5|CS202002011_6|CS202002011_7|CS202002011_8|CS202002011_9|CS202002011_10|CS202002011_11|CS202002011_12|CS202002011_13|CS202002011_14|CS202002011_15|CS202002011_16|CS202002011_17|CS202002011_18|CS202002011_19|CS202002011_20|CS202002011_21|CS202002011_22|CS202002011_23|CS202002011_24|CS202002011_25|CS202002011_26|CS202002011_27|CS202002011_28|CS202002011_29|CS202002011_30|CS202002011_31|CS202002011_32|CS202002011_33|CS202002011_34 +IT projecting,IT projecting,SCF 01-13,CS202002011_87,IT projecting,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_1|CS202002011_2|CS202002011_3|CS202002011_4|CS202002011_5|CS202002011_6|CS202002011_7|CS202002011_8|CS202002011_9|CS202002011_10|CS202002011_11|CS202002011_12|CS202002011_13 +Non-IT projecting,Non-IT projecting,SCF 14-34,CS202002011_88,Non-IT projecting,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_14|CS202002011_15|CS202002011_16|CS202002011_17|CS202002011_18|CS202002011_19|CS202002011_20|CS202002011_21|CS202002011_22|CS202002011_23|CS202002011_24|CS202002011_25|CS202002011_26|CS202002011_27|CS202002011_28|CS202002011_29|CS202002011_30|CS202002011_31|CS202002011_32|CS202002011_33|CS202002011_34 +GABAergic,GABAergic,SCF 35-56,CS202002011_89,Neuronal: GABAergic,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_35|CS202002011_36|CS202002011_37|CS202002011_38|CS202002011_39|CS202002011_40|CS202002011_41|CS202002011_42|CS202002011_43|CS202002011_44|CS202002011_45|CS202002011_46|CS202002011_47|CS202002011_48|CS202002011_49|CS202002011_50|CS202002011_51|CS202002011_52|CS202002011_53|CS202002011_54|CS202002011_55|CS202002011_56 +CGE/PoA,CGE/PoA,SCF 45-56,CS202002011_90,CGE/PoA,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_45|CS202002011_46|CS202002011_47|CS202002011_48|CS202002011_49|CS202002011_50|CS202002011_51|CS202002011_52|CS202002011_53|CS202002011_54|CS202002011_55|CS202002011_56 +MGE,MGE,SCF 35-44,CS202002011_91,MGE,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_35|CS202002011_36|CS202002011_37|CS202002011_38|CS202002011_39|CS202002011_40|CS202002011_41|CS202002011_42|CS202002011_43|CS202002011_44 +L2/3 IT,L2/3 IT,SCF 01-05,CS202002011_92,L2/3 IT,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_1|CS202002011_2|CS202002011_3|CS202002011_4|CS202002011_5 +L4/5 IT,L4/5 IT,SCF 06-08,CS202002011_93,L4/5 IT,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_6|CS202002011_7|CS202002011_8 +L5 IT,L5 IT,SCF 09-11,CS202002011_94,L5 IT,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_9|CS202002011_10|CS202002011_11 +L5 ET,L5 ET,SCF 14-16,CS202002011_95,L5 ET,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_14|CS202002011_15|CS202002011_16 +L6 CT,L6 CT,SCF 17-25,CS202002011_96,L6 CT,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_17|CS202002011_18|CS202002011_19|CS202002011_20|CS202002011_21|CS202002011_22|CS202002011_23|CS202002011_24|CS202002011_25 +L6 CT Cpa6,L6 CT Cpa6,"SCF 17-20, 22",CS202002011_97,,RNAseq 076 in CCN202002013,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_17|CS202002011_18|CS202002011_19|CS202002011_20|CS202002011_22 +L6 CT Nxph2 Pou3f2,L6 CT Nxph2 Pou3f2,SCF 23-24,CS202002011_98,,RNAseq 078 in CCN202002013,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_23|CS202002011_24 +L5/6 NP,L5/6 NP,SCF 26-29,CS202002011_99,L5/6 NP,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_26|CS202002011_27|CS202002011_28|CS202002011_29 +L5 NP Slc17a8,L5 NP Slc17a8,SCF 27-28,CS202002011_100,,RNAseq 086-087 in CCN202002013,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_27|CS202002011_28 +L6b,L6b,SCF 30-34,CS202002011_101,L6b,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_30|CS202002011_31|CS202002011_32|CS202002011_33|CS202002011_34 +L6b Shisa6,L6b Shisa6,SCF 30-31,CS202002011_102,,RNAseq 082-083 in CCN202002013,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_30|CS202002011_31 +L6b Kcnip1,L6b Kcnip1,SCF 33-34,CS202002011_103,,RNAseq 085 in CCN202002013,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_33|CS202002011_34 +Pvalb,Pvalb,SCF 35-38,CS202002011_104,Pvalb,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_35|CS202002011_36|CS202002011_37|CS202002011_38 +Sst,Sst,SCF 39-44,CS202002011_105,Sst,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_39|CS202002011_40|CS202002011_41|CS202002011_42|CS202002011_43|CS202002011_44 +Sst Crhr2,Sst Crhr2,SCF 40-41,CS202002011_106,,RNAseq 036-037 in CCN202002013,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_40|CS202002011_41 +Lamp5,Lamp5,SCF 45-48,CS202002011_107,Lamp5,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_45|CS202002011_46|CS202002011_47|CS202002011_48 +Sncg,Sncg,SCF 49-50,CS202002011_108,Sncg,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_49|CS202002011_50 +Vip,Vip,SCF 51-56,CS202002011_109,Vip,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_51|CS202002011_52|CS202002011_53|CS202002011_54|CS202002011_55|CS202002011_56 +,All cells,SCF 01-85,CS202002011_110,,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_1|CS202002011_2|CS202002011_3|CS202002011_4|CS202002011_5|CS202002011_6|CS202002011_7|CS202002011_8|CS202002011_9|CS202002011_10|CS202002011_11|CS202002011_12|CS202002011_13|CS202002011_14|CS202002011_15|CS202002011_16|CS202002011_17|CS202002011_18|CS202002011_19|CS202002011_20|CS202002011_21|CS202002011_22|CS202002011_23|CS202002011_24|CS202002011_25|CS202002011_26|CS202002011_27|CS202002011_28|CS202002011_29|CS202002011_30|CS202002011_31|CS202002011_32|CS202002011_33|CS202002011_34|CS202002011_35|CS202002011_36|CS202002011_37|CS202002011_38|CS202002011_39|CS202002011_40|CS202002011_41|CS202002011_42|CS202002011_43|CS202002011_44|CS202002011_45|CS202002011_46|CS202002011_47|CS202002011_48|CS202002011_49|CS202002011_50|CS202002011_51|CS202002011_52|CS202002011_53|CS202002011_54|CS202002011_55|CS202002011_56|CS202002011_57|CS202002011_58|CS202002011_59|CS202002011_60|CS202002011_61|CS202002011_62|CS202002011_63|CS202002011_64|CS202002011_65|CS202002011_66|CS202002011_67|CS202002011_68|CS202002011_69|CS202002011_70|CS202002011_71|CS202002011_72|CS202002011_73|CS202002011_74|CS202002011_75|CS202002011_76|CS202002011_77|CS202002011_78|CS202002011_79|CS202002011_80|CS202002011_81|CS202002011_82|CS202002011_83|CS202002011_84|CS202002011_85 \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202002012.csv b/src/dendrograms/nomenclature_table_CCN202002012.csv index 0a2cd7ef..e0fb0ae8 100644 --- a/src/dendrograms/nomenclature_table_CCN202002012.csv +++ b/src/dendrograms/nomenclature_table_CCN202002012.csv @@ -70,38 +70,39 @@ VLMC_5 (nn_10),VLMC_5 (nn_10),LIGER 68,CS202002012_68,,RNAseq 108 in CCN20200201 SMC (nn_9),SMC (nn_9),LIGER 69,CS202002012_69,SMC,RNAseq 111 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, Micro (nn_2),Micro (nn_2),LIGER 70,CS202002012_70,Microglia,RNAseq 113 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, PVM_1 (nn_13),PVM_1 (nn_13),LIGER 71,CS202002012_71,PVM,RNAseq 114 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Glutamatergic,Glutamatergic,LIGER 01-24,CS202002012_72,Neuronal: Glutamatergic,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -IT projecting,IT projecting,LIGER 01-11,CS202002012_73,IT projecting,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Non-IT projecting,Non-IT projecting,LIGER 12-24,CS202002012_74,Non-IT projecting,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -GABAergic,GABAergic,LIGER 25-56,CS202002012_75,Neuronal: GABAergic,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -CGE/PoA,CGE/PoA,LIGER 25-39,CS202002012_76,CGE/PoA,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -MGE,MGE,LIGER 40-56,CS202002012_77,MGE,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -L2/3 IT,L2/3 IT,LIGER 01-05,CS202002012_78,L2/3 IT,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -L2/3 IT_1,L2/3 IT_1,"LIGER 01, 03, 05",CS202002012_79,,RNAseq 058 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -L4/5 IT,L4/5 IT,LIGER 06-08,CS202002012_80,L4/5 IT,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -L4/5 IT_1,L4/5 IT_1,"LIGER 02, 04, 06, 08",CS202002012_81,,RNAseq 061 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -L5 IT,L5 IT,LIGER 09-10,CS202002012_82,L5 IT,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -L5 ET,L5 ET,LIGER 12-15,CS202002012_83,L5 ET,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -L5 ET_2,L5 ET_2,"LIGER 12, 14-15",CS202002012_84,,RNAseq 071 in CCN202002013|L5 ET (Non-MY-projecting),Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -L5/6 NP,L5/6 NP,LIGER 23-24,CS202002012_85,L5/6 NP,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -L6 CT,L6 CT,LIGER 16-21,CS202002012_86,L6 CT,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -L6 CT Cpa6,L6 CT Cpa6,LIGER 16-20,CS202002012_87,,RNAseq 076 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Pvalb,Pvalb,LIGER 25-30,CS202002012_88,Pvalb,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Pvalb Reln,Pvalb Reln,"LIGER 25, 28",CS202002012_89,,RNAseq 054 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Pvalb Calb1,Pvalb Calb1,"LIGER 26, 29",CS202002012_90,,RNAseq 052-053 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Sst,Sst,LIGER 31-39,CS202002012_91,Sst,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Sst Calb2,Sst Calb2,"LIGER 31, 33-34",CS202002012_92,,RNAseq 039 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Sst Crhr2_1,Sst Crhr2_1,"LIGER 32, 36-37",CS202002012_93,,RNAseq 036 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Sst Myh8,Sst Myh8,"LIGER 35, 38",CS202002012_94,,RNAseq 030-032 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Vip,Vip,LIGER 40-48,CS202002012_95,Vip,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Vip Chat,Vip Chat,LIGER 41-43,CS202002012_96,,"RNAseq 023, 025 in CCN202002013",Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Sncg,Sncg,LIGER 49-50,CS202002012_97,Sncg,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Lamp5,Lamp5,LIGER 51-56,CS202002012_98,Lamp5,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Lamp5 Slc35d3,Lamp5 Slc35d3,"LIGER 40, 52-53",CS202002012_99,,RNAseq 007 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Lamp5 Pax6,Lamp5 Pax6,"LIGER 54, 56",CS202002012_100,,RNAseq 001 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Non-neuronal,Non-neuronal,LIGER 57-64,CS202002012_101,Non-neuronal,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Non-neural,Non-neural,LIGER 65-71,CS202002012_102,Non-neural,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Astrocyte,Astrocyte,LIGER 57-59,CS202002012_103,Astrocyte,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Oligodendrocyte,Oligodendrocyte,LIGER 61-64,CS202002012_104,Oligodendrocyte,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Oligo Opalin_2,Oligo Opalin_2,LIGER 63-64,CS202002012_105,,RNAseq 100 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -VLMC,VLMC,LIGER 66-68,CS202002012_106,VLMC,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, \ No newline at end of file +Glutamatergic,Glutamatergic,LIGER 01-24,CS202002012_72,Neuronal: Glutamatergic,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_1|CS202002012_2|CS202002012_3|CS202002012_4|CS202002012_5|CS202002012_6|CS202002012_7|CS202002012_8|CS202002012_9|CS202002012_10|CS202002012_11|CS202002012_12|CS202002012_13|CS202002012_14|CS202002012_15|CS202002012_16|CS202002012_17|CS202002012_18|CS202002012_19|CS202002012_20|CS202002012_21|CS202002012_22|CS202002012_23|CS202002012_24 +IT projecting,IT projecting,LIGER 01-11,CS202002012_73,IT projecting,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_1|CS202002012_2|CS202002012_3|CS202002012_4|CS202002012_5|CS202002012_6|CS202002012_7|CS202002012_8|CS202002012_9|CS202002012_10|CS202002012_11 +Non-IT projecting,Non-IT projecting,LIGER 12-24,CS202002012_74,Non-IT projecting,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_12|CS202002012_13|CS202002012_14|CS202002012_15|CS202002012_16|CS202002012_17|CS202002012_18|CS202002012_19|CS202002012_20|CS202002012_21|CS202002012_22|CS202002012_23|CS202002012_24 +GABAergic,GABAergic,LIGER 25-56,CS202002012_75,Neuronal: GABAergic,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_25|CS202002012_26|CS202002012_27|CS202002012_28|CS202002012_29|CS202002012_30|CS202002012_31|CS202002012_32|CS202002012_33|CS202002012_34|CS202002012_35|CS202002012_36|CS202002012_37|CS202002012_38|CS202002012_39|CS202002012_40|CS202002012_41|CS202002012_42|CS202002012_43|CS202002012_44|CS202002012_45|CS202002012_46|CS202002012_47|CS202002012_48|CS202002012_49|CS202002012_50|CS202002012_51|CS202002012_52|CS202002012_53|CS202002012_54|CS202002012_55|CS202002012_56 +CGE/PoA,CGE/PoA,LIGER 25-39,CS202002012_76,CGE/PoA,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_25|CS202002012_26|CS202002012_27|CS202002012_28|CS202002012_29|CS202002012_30|CS202002012_31|CS202002012_32|CS202002012_33|CS202002012_34|CS202002012_35|CS202002012_36|CS202002012_37|CS202002012_38|CS202002012_39 +MGE,MGE,LIGER 40-56,CS202002012_77,MGE,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_40|CS202002012_41|CS202002012_42|CS202002012_43|CS202002012_44|CS202002012_45|CS202002012_46|CS202002012_47|CS202002012_48|CS202002012_49|CS202002012_50|CS202002012_51|CS202002012_52|CS202002012_53|CS202002012_54|CS202002012_55|CS202002012_56 +L2/3 IT,L2/3 IT,LIGER 01-05,CS202002012_78,L2/3 IT,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_1|CS202002012_2|CS202002012_3|CS202002012_4|CS202002012_5 +L2/3 IT_1,L2/3 IT_1,"LIGER 01, 03, 05",CS202002012_79,,RNAseq 058 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_1|CS202002012_3|CS202002012_5 +L4/5 IT,L4/5 IT,LIGER 06-08,CS202002012_80,L4/5 IT,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_6|CS202002012_7|CS202002012_8 +L4/5 IT_1,L4/5 IT_1,"LIGER 02, 04, 06, 08",CS202002012_81,,RNAseq 061 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_2|CS202002012_4|CS202002012_6|CS202002012_8 +L5 IT,L5 IT,LIGER 09-10,CS202002012_82,L5 IT,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_9|CS202002012_10 +L5 ET,L5 ET,LIGER 12-15,CS202002012_83,L5 ET,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_12|CS202002012_13|CS202002012_14|CS202002012_15 +L5 ET_2,L5 ET_2,"LIGER 12, 14-15",CS202002012_84,,RNAseq 071 in CCN202002013|L5 ET (Non-MY-projecting),Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_12|CS202002012_14|CS202002012_15 +L5/6 NP,L5/6 NP,LIGER 23-24,CS202002012_85,L5/6 NP,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_23|CS202002012_24 +L6 CT,L6 CT,LIGER 16-21,CS202002012_86,L6 CT,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_16|CS202002012_17|CS202002012_18|CS202002012_19|CS202002012_20|CS202002012_21 +L6 CT Cpa6,L6 CT Cpa6,LIGER 16-20,CS202002012_87,,RNAseq 076 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_16|CS202002012_17|CS202002012_18|CS202002012_19|CS202002012_20 +Pvalb,Pvalb,LIGER 25-30,CS202002012_88,Pvalb,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_25|CS202002012_26|CS202002012_27|CS202002012_28|CS202002012_29|CS202002012_30 +Pvalb Reln,Pvalb Reln,"LIGER 25, 28",CS202002012_89,,RNAseq 054 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_25|CS202002012_28 +Pvalb Calb1,Pvalb Calb1,"LIGER 26, 29",CS202002012_90,,RNAseq 052-053 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_26|CS202002012_29 +Sst,Sst,LIGER 31-39,CS202002012_91,Sst,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_31|CS202002012_32|CS202002012_33|CS202002012_34|CS202002012_35|CS202002012_36|CS202002012_37|CS202002012_38|CS202002012_39 +Sst Calb2,Sst Calb2,"LIGER 31, 33-34",CS202002012_92,,RNAseq 039 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_31|CS202002012_33|CS202002012_34 +Sst Crhr2_1,Sst Crhr2_1,"LIGER 32, 36-37",CS202002012_93,,RNAseq 036 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_32|CS202002012_36|CS202002012_37 +Sst Myh8,Sst Myh8,"LIGER 35, 38",CS202002012_94,,RNAseq 030-032 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_35|CS202002012_38 +Vip,Vip,LIGER 40-48,CS202002012_95,Vip,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_40|CS202002012_41|CS202002012_42|CS202002012_43|CS202002012_44|CS202002012_45|CS202002012_46|CS202002012_47|CS202002012_48 +Vip Chat,Vip Chat,LIGER 41-43,CS202002012_96,,"RNAseq 023, 025 in CCN202002013",Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_41|CS202002012_42|CS202002012_43 +Sncg,Sncg,LIGER 49-50,CS202002012_97,Sncg,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_49|CS202002012_50 +Lamp5,Lamp5,LIGER 51-56,CS202002012_98,Lamp5,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_51|CS202002012_52|CS202002012_53|CS202002012_54|CS202002012_55|CS202002012_56 +Lamp5 Slc35d3,Lamp5 Slc35d3,"LIGER 40, 52-53",CS202002012_99,,RNAseq 007 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_40|CS202002012_52|CS202002012_53 +Lamp5 Pax6,Lamp5 Pax6,"LIGER 54, 56",CS202002012_100,,RNAseq 001 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_54|CS202002012_56 +Non-neuronal,Non-neuronal,LIGER 57-64,CS202002012_101,Non-neuronal,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_57|CS202002012_58|CS202002012_59|CS202002012_60|CS202002012_61|CS202002012_62|CS202002012_63|CS202002012_64 +Non-neural,Non-neural,LIGER 65-71,CS202002012_102,Non-neural,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_65|CS202002012_66|CS202002012_67|CS202002012_68|CS202002012_69|CS202002012_70|CS202002012_71 +Astrocyte,Astrocyte,LIGER 57-59,CS202002012_103,Astrocyte,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_57|CS202002012_58|CS202002012_59 +Oligodendrocyte,Oligodendrocyte,LIGER 61-64,CS202002012_104,Oligodendrocyte,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_61|CS202002012_62|CS202002012_63|CS202002012_64 +Oligo Opalin_2,Oligo Opalin_2,LIGER 63-64,CS202002012_105,,RNAseq 100 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_63|CS202002012_64 +VLMC,VLMC,LIGER 66-68,CS202002012_106,VLMC,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_66|CS202002012_67|CS202002012_68 +,All cells,LIGER 01-71,CS202002012_107,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_1|CS202002012_2|CS202002012_3|CS202002012_4|CS202002012_5|CS202002012_6|CS202002012_7|CS202002012_8|CS202002012_9|CS202002012_10|CS202002012_11|CS202002012_12|CS202002012_13|CS202002012_14|CS202002012_15|CS202002012_16|CS202002012_17|CS202002012_18|CS202002012_19|CS202002012_20|CS202002012_21|CS202002012_22|CS202002012_23|CS202002012_24|CS202002012_25|CS202002012_26|CS202002012_27|CS202002012_28|CS202002012_29|CS202002012_30|CS202002012_31|CS202002012_32|CS202002012_33|CS202002012_34|CS202002012_35|CS202002012_36|CS202002012_37|CS202002012_38|CS202002012_39|CS202002012_40|CS202002012_41|CS202002012_42|CS202002012_43|CS202002012_44|CS202002012_45|CS202002012_46|CS202002012_47|CS202002012_48|CS202002012_49|CS202002012_50|CS202002012_51|CS202002012_52|CS202002012_53|CS202002012_54|CS202002012_55|CS202002012_56|CS202002012_57|CS202002012_58|CS202002012_59|CS202002012_60|CS202002012_61|CS202002012_62|CS202002012_63|CS202002012_64|CS202002012_65|CS202002012_66|CS202002012_67|CS202002012_68|CS202002012_69|CS202002012_70|CS202002012_71 \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202002013.csv b/src/dendrograms/nomenclature_table_CCN202002013.csv index 85e8342f..61c0af0c 100644 --- a/src/dendrograms/nomenclature_table_CCN202002013.csv +++ b/src/dendrograms/nomenclature_table_CCN202002013.csv @@ -115,144 +115,144 @@ Micro,Micro,RNAseq 113,CS202002013_113,Microglia,,Zizhen Yao,10.1101/2020.02.29. PVM_1,PVM_1,RNAseq 114,CS202002013_114,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, PVM_2,PVM_2,RNAseq 115,CS202002013_115,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, PVM_3,PVM_3,RNAseq 116,CS202002013_116,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -,n1,All cells,CS202002013_117,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -,n2,RNAseq 001-102,CS202002013_118,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_1|CS202002013_2|CS202002013_3|CS202002013_4|CS202002013_5|CS202002013_6|CS202002013_7|CS202002013_8|CS202002013_9|CS202002013_10|CS202002013_11|CS202002013_12|CS202002013_13|CS202002013_14|CS202002013_15|CS202002013_16|CS202002013_17|CS202002013_18|CS202002013_19|CS202002013_20|CS202002013_21|CS202002013_22|CS202002013_23|CS202002013_24|CS202002013_25|CS202002013_26|CS202002013_27|CS202002013_28|CS202002013_29|CS202002013_30|CS202002013_31|CS202002013_32|CS202002013_33|CS202002013_34|CS202002013_35|CS202002013_36|CS202002013_37|CS202002013_38|CS202002013_39|CS202002013_40|CS202002013_41|CS202002013_42|CS202002013_43|CS202002013_44|CS202002013_45|CS202002013_46|CS202002013_47|CS202002013_48|CS202002013_49|CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53|CS202002013_54|CS202002013_55|CS202002013_56|CS202002013_57|CS202002013_58|CS202002013_59|CS202002013_60|CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66|CS202002013_67|CS202002013_68|CS202002013_69|CS202002013_70|CS202002013_71|CS202002013_72|CS202002013_73|CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80|CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85|CS202002013_86|CS202002013_87|CS202002013_88|CS202002013_89|CS202002013_90|CS202002013_91|CS202002013_92|CS202002013_93|CS202002013_94|CS202002013_95|CS202002013_96|CS202002013_97|CS202002013_98|CS202002013_99|CS202002013_100|CS202002013_101|CS202002013_102 -,n3,RNAseq 001-094,CS202002013_119,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_1|CS202002013_2|CS202002013_3|CS202002013_4|CS202002013_5|CS202002013_6|CS202002013_7|CS202002013_8|CS202002013_9|CS202002013_10|CS202002013_11|CS202002013_12|CS202002013_13|CS202002013_14|CS202002013_15|CS202002013_16|CS202002013_17|CS202002013_18|CS202002013_19|CS202002013_20|CS202002013_21|CS202002013_22|CS202002013_23|CS202002013_24|CS202002013_25|CS202002013_26|CS202002013_27|CS202002013_28|CS202002013_29|CS202002013_30|CS202002013_31|CS202002013_32|CS202002013_33|CS202002013_34|CS202002013_35|CS202002013_36|CS202002013_37|CS202002013_38|CS202002013_39|CS202002013_40|CS202002013_41|CS202002013_42|CS202002013_43|CS202002013_44|CS202002013_45|CS202002013_46|CS202002013_47|CS202002013_48|CS202002013_49|CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53|CS202002013_54|CS202002013_55|CS202002013_56|CS202002013_57|CS202002013_58|CS202002013_59|CS202002013_60|CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66|CS202002013_67|CS202002013_68|CS202002013_69|CS202002013_70|CS202002013_71|CS202002013_72|CS202002013_73|CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80|CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85|CS202002013_86|CS202002013_87|CS202002013_88|CS202002013_89|CS202002013_90|CS202002013_91|CS202002013_92|CS202002013_93|CS202002013_94 -,n4,RNAseq 001-091,CS202002013_120,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_1|CS202002013_2|CS202002013_3|CS202002013_4|CS202002013_5|CS202002013_6|CS202002013_7|CS202002013_8|CS202002013_9|CS202002013_10|CS202002013_11|CS202002013_12|CS202002013_13|CS202002013_14|CS202002013_15|CS202002013_16|CS202002013_17|CS202002013_18|CS202002013_19|CS202002013_20|CS202002013_21|CS202002013_22|CS202002013_23|CS202002013_24|CS202002013_25|CS202002013_26|CS202002013_27|CS202002013_28|CS202002013_29|CS202002013_30|CS202002013_31|CS202002013_32|CS202002013_33|CS202002013_34|CS202002013_35|CS202002013_36|CS202002013_37|CS202002013_38|CS202002013_39|CS202002013_40|CS202002013_41|CS202002013_42|CS202002013_43|CS202002013_44|CS202002013_45|CS202002013_46|CS202002013_47|CS202002013_48|CS202002013_49|CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53|CS202002013_54|CS202002013_55|CS202002013_56|CS202002013_57|CS202002013_58|CS202002013_59|CS202002013_60|CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66|CS202002013_67|CS202002013_68|CS202002013_69|CS202002013_70|CS202002013_71|CS202002013_72|CS202002013_73|CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80|CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85|CS202002013_86|CS202002013_87|CS202002013_88|CS202002013_89|CS202002013_90|CS202002013_91 -,n5,RNAseq 001-090,CS202002013_121,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor 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cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_56|CS202002013_57 -Glutamatergic,n63,RNAseq 058-088,CS202002013_179,Neuronal: Glutamatergic,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_58|CS202002013_59|CS202002013_60|CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66|CS202002013_67|CS202002013_68|CS202002013_69|CS202002013_70|CS202002013_71|CS202002013_72|CS202002013_73|CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80|CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85|CS202002013_86|CS202002013_87|CS202002013_88 -,n64,RNAseq 058-085,CS202002013_180,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_58|CS202002013_59|CS202002013_60|CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66|CS202002013_67|CS202002013_68|CS202002013_69|CS202002013_70|CS202002013_71|CS202002013_72|CS202002013_73|CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80|CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85 -,n65,RNAseq 058-073,CS202002013_181,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_58|CS202002013_59|CS202002013_60|CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66|CS202002013_67|CS202002013_68|CS202002013_69|CS202002013_70|CS202002013_71|CS202002013_72|CS202002013_73 -IT projecting,n66,RNAseq 058-069,CS202002013_182,IT projecting,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_58|CS202002013_59|CS202002013_60|CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66|CS202002013_67|CS202002013_68|CS202002013_69 -L2/3 IT,n67,RNAseq 058-060,CS202002013_183,L2/3 IT,L2/3 IT,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_58|CS202002013_59|CS202002013_60 -,n68,RNAseq 058-059,CS202002013_184,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_58|CS202002013_59 -,n69,RNAseq 061-069,CS202002013_185,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66|CS202002013_67|CS202002013_68|CS202002013_69 -,n70,RNAseq 061-068,CS202002013_186,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66|CS202002013_67|CS202002013_68 -,n71,RNAseq 061-066,CS202002013_187,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66 -L4,n72,RNAseq 061-062,CS202002013_188,L4/5 IT,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_61|CS202002013_62 -L5 IT,n73,RNAseq 063-066,CS202002013_189,L5 IT,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66 -L5 IT_C2,n74,RNAseq 063-064,CS202002013_190,,L5 IT_2,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_63|CS202002013_64 -,n75,RNAseq 065-066,CS202002013_191,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_65|CS202002013_66 -L6 IT,n76,RNAseq 067-068,CS202002013_192,L6 IT,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_67|CS202002013_68 -L5 ET,n77,RNAseq 070-073,CS202002013_193,L5 ET,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_70|CS202002013_71|CS202002013_72|CS202002013_73 -L5 ET (Non-MY-projecting),n78,RNAseq 071-073,CS202002013_194,,L5 ET (Non-MY-projecting)|Non-MY-projecting L5 ET,Zizhen Yao|Bosiljka Tasic|Federico Scala,10.1101/2020.02.29.970558|10.1038/s41586-018-0654-5|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_71|CS202002013_72|CS202002013_73 -,n79,RNAseq 071-072,CS202002013_195,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_71|CS202002013_72 -,n80,RNAseq 074-085,CS202002013_196,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80|CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85 -L6 CT,n81,RNAseq 074-080,CS202002013_197,L6 CT,Corticothalamic|VAL/VM Projecting,Zizhen Yao|||Federico Scala,10.1101/2020.02.29.970558|||10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80 -,n82,RNAseq 075-080,CS202002013_198,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80 -,n83,RNAseq 075-078,CS202002013_199,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78 -,n84,RNAseq 076-078,CS202002013_200,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_76|CS202002013_77|CS202002013_78 -,n85,RNAseq 077-078,CS202002013_201,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_77|CS202002013_78 -,n86,RNAseq 079-080,CS202002013_202,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_79|CS202002013_80 -L6b,n87,RNAseq 081-085,CS202002013_203,L6b,L6b|L6b subplate,Zizhen Yao||Nikolas Jorstad|Federico Scala,10.1101/2020.02.29.970558||10.1101/2020.03.31.016972|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85 -,n88,RNAseq 081-084,CS202002013_204,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84 -,n89,RNAseq 082-084,CS202002013_205,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_82|CS202002013_83|CS202002013_84 -,n90,RNAseq 082-083,CS202002013_206,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_82|CS202002013_83 -L5/6 NP,n91,RNAseq 086-088,CS202002013_207,L5/6 NP,L5/6 NP|Near-projecting,Zizhen Yao||Nikolas Jorstad|Federico Scala,10.1101/2020.02.29.970558||10.1101/2020.03.31.016972|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_86|CS202002013_87|CS202002013_88 -,n92,RNAseq 086-087,CS202002013_208,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_86|CS202002013_87 -Meis2,n93,RNAseq 089-090,CS202002013_209,Meis2,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_89|CS202002013_90 -Astro,n94,RNAseq 092-094,CS202002013_210,Astrocyte,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_92|CS202002013_93|CS202002013_94 -Astro_C1,n95,RNAseq 093-094,CS202002013_211,,Astro_1,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_93|CS202002013_94 -Oligo,n96,RNAseq 095-102,CS202002013_212,Oligodendrocyte,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_95|CS202002013_96|CS202002013_97|CS202002013_98|CS202002013_99|CS202002013_100|CS202002013_101|CS202002013_102 -,n97,RNAseq 095-098,CS202002013_213,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_95|CS202002013_96|CS202002013_97|CS202002013_98 -,n98,RNAseq 095-096,CS202002013_214,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_95|CS202002013_96 -,n99,RNAseq 097-098,CS202002013_215,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_97|CS202002013_98 -,n100,RNAseq 099-102,CS202002013_216,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_99|CS202002013_100|CS202002013_101|CS202002013_102 -,n101,RNAseq 099-100,CS202002013_217,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_99|CS202002013_100 -,n102,RNAseq 101-102,CS202002013_218,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_101|CS202002013_102 -Non-neural,n103,RNAseq 103-116,CS202002013_219,Non-neural,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_103|CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_108|CS202002013_109|CS202002013_110|CS202002013_111|CS202002013_112|CS202002013_113|CS202002013_114|CS202002013_115|CS202002013_116 -,n104,RNAseq 103-112,CS202002013_220,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_103|CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_108|CS202002013_109|CS202002013_110|CS202002013_111|CS202002013_112 -,n105,RNAseq 104-112,CS202002013_221,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_108|CS202002013_109|CS202002013_110|CS202002013_111|CS202002013_112 -VLMC,n106,RNAseq 104-110,CS202002013_222,VLMC,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_108|CS202002013_109|CS202002013_110 -,n107,RNAseq 104-107,CS202002013_223,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107 -,n108,RNAseq 104-105,CS202002013_224,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_104|CS202002013_105 -,n109,RNAseq 106-107,CS202002013_225,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_106|CS202002013_107 -,n110,RNAseq 108-110,CS202002013_226,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_108|CS202002013_109|CS202002013_110 -,n111,RNAseq 108-109,CS202002013_227,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_108|CS202002013_109 -,n112,RNAseq 111-112,CS202002013_228,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_111|CS202002013_112 -Micro-PVM,n113,RNAseq 113-116,CS202002013_229,Microglia-PVM,Microglia/PVM,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_113|CS202002013_114|CS202002013_115|CS202002013_116 -,n114,RNAseq 113-115,CS202002013_230,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_113|CS202002013_114|CS202002013_115 -,n115,RNAseq 114-115,CS202002013_231,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_114|CS202002013_115 -Sst,,RNAseq 028-047,CS202002013_232,Sst,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_28|CS202002013_29|CS202002013_30|CS202002013_31|CS202002013_32|CS202002013_33|CS202002013_34|CS202002013_35|CS202002013_36|CS202002013_37|CS202002013_38|CS202002013_39|CS202002013_40|CS202002013_41|CS202002013_42|CS202002013_43|CS202002013_44|CS202002013_45|CS202002013_46|CS202002013_47 -Pvalb,,RNAseq 048-057,CS202002013_233,Pvalb,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_48|CS202002013_49|CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53|CS202002013_54|CS202002013_55|CS202002013_56|CS202002013_57 -Non-IT projecting,,RNAseq 070-088,CS202002013_234,Non-IT projecting,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_70|CS202002013_71|CS202002013_72|CS202002013_73|CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80|CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85|CS202002013_86|CS202002013_87|CS202002013_88 -Non-Neuronal,,RNAseq 091-102,CS202002013_235,Non-neuronal,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_91|CS202002013_92|CS202002013_93|CS202002013_94|CS202002013_95|CS202002013_96|CS202002013_97|CS202002013_98|CS202002013_99|CS202002013_100|CS202002013_101|CS202002013_102|CS202002013_103|CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_108|CS202002013_109|CS202002013_110|CS202002013_111|CS202002013_112|CS202002013_113|CS202002013_114|CS202002013_115|CS202002013_116 -Oligo-OPC,,"RNAseq 091,095-102",CS202002013_236,Oligodendrocyte-OPC,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_91|CS202002013_95|CS202002013_96|CS202002013_97|CS202002013_98|CS202002013_99|CS202002013_100|CS202002013_101|CS202002013_102 -PVM,,RNAseq 114-116,CS202002013_237,PVM,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_114|CS202002013_115|CS202002013_116 -Lamp5_C2,,RNAseq 006-007,CS202002013_239,,Lamp5_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_6|CS202002013_7 -Sncg_C3,,RNAseq 011-013,CS202002013_240,,Sncg_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_11|CS202002013_12|CS202002013_13 -Sncg_C1,,"RNAseq 014, 016",CS202002013_241,,Sncg_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_14|CS202002013_16 -Vip_C3,,"RNAseq 015, 019, 022",CS202002013_242,,Vip_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_15|CS202002013_19|CS202002013_22 -Vip_C2,,"RNAseq 017-018, 020-021",CS202002013_243,,Vip_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_17|CS202002013_18|CS202002013_20|CS202002013_21 -Vip_C1,,RNAseq 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cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66|CS202002013_67|CS202002013_68 +,,RNAseq 061-066,CS202002013_187,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66 +L4,L4,RNAseq 061-062,CS202002013_188,L4/5 IT,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_61|CS202002013_62 +L5 IT,L5 IT,RNAseq 063-066,CS202002013_189,L5 IT,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66 +L5 IT_C2,L5 IT_C2,RNAseq 063-064,CS202002013_190,,L5 IT_2,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_63|CS202002013_64 +,,RNAseq 065-066,CS202002013_191,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_65|CS202002013_66 +L6 IT,L6 IT,RNAseq 067-068,CS202002013_192,L6 IT,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_67|CS202002013_68 +L5 ET,L5 ET,RNAseq 070-073,CS202002013_193,L5 ET,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_70|CS202002013_71|CS202002013_72|CS202002013_73 +L5 ET (Non-MY-projecting),L5 ET (Non-MY-projecting),RNAseq 071-073,CS202002013_194,,L5 ET (Non-MY-projecting)|Non-MY-projecting L5 ET,Zizhen Yao|Bosiljka Tasic|Federico Scala,10.1101/2020.02.29.970558|10.1038/s41586-018-0654-5|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_71|CS202002013_72|CS202002013_73 +,,RNAseq 071-072,CS202002013_195,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_71|CS202002013_72 +,,RNAseq 074-085,CS202002013_196,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80|CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85 +L6 CT,L6 CT,RNAseq 074-080,CS202002013_197,L6 CT,Corticothalamic|VAL/VM Projecting,Zizhen Yao|||Federico Scala,10.1101/2020.02.29.970558|||10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80 +,,RNAseq 075-080,CS202002013_198,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80 +,,RNAseq 075-078,CS202002013_199,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78 +,,RNAseq 076-078,CS202002013_200,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_76|CS202002013_77|CS202002013_78 +,,RNAseq 077-078,CS202002013_201,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_77|CS202002013_78 +,,RNAseq 079-080,CS202002013_202,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_79|CS202002013_80 +L6b,L6b,RNAseq 081-085,CS202002013_203,L6b,L6b|L6b subplate,Zizhen Yao||Nikolas Jorstad|Federico Scala,10.1101/2020.02.29.970558||10.1101/2020.03.31.016972|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85 +,,RNAseq 081-084,CS202002013_204,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84 +,,RNAseq 082-084,CS202002013_205,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_82|CS202002013_83|CS202002013_84 +,,RNAseq 082-083,CS202002013_206,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_82|CS202002013_83 +L5/6 NP,L5/6 NP,RNAseq 086-088,CS202002013_207,L5/6 NP,L5/6 NP|Near-projecting,Zizhen Yao||Nikolas Jorstad|Federico Scala,10.1101/2020.02.29.970558||10.1101/2020.03.31.016972|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_86|CS202002013_87|CS202002013_88 +,,RNAseq 086-087,CS202002013_208,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_86|CS202002013_87 +Meis2,Meis2,RNAseq 089-090,CS202002013_209,Meis2,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_89|CS202002013_90 +Astro,Astro,RNAseq 092-094,CS202002013_210,Astrocyte,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_92|CS202002013_93|CS202002013_94 +Astro_C1,Astro_C1,RNAseq 093-094,CS202002013_211,,Astro_1,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_93|CS202002013_94 +Oligo,Oligo,RNAseq 095-102,CS202002013_212,Oligodendrocyte,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_95|CS202002013_96|CS202002013_97|CS202002013_98|CS202002013_99|CS202002013_100|CS202002013_101|CS202002013_102 +,,RNAseq 095-098,CS202002013_213,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_95|CS202002013_96|CS202002013_97|CS202002013_98 +,,RNAseq 095-096,CS202002013_214,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_95|CS202002013_96 +,,RNAseq 097-098,CS202002013_215,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_97|CS202002013_98 +,,RNAseq 099-102,CS202002013_216,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_99|CS202002013_100|CS202002013_101|CS202002013_102 +,,RNAseq 099-100,CS202002013_217,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_99|CS202002013_100 +,,RNAseq 101-102,CS202002013_218,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_101|CS202002013_102 +Non-neural,Non-neural,RNAseq 103-116,CS202002013_219,Non-neural,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_103|CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_108|CS202002013_109|CS202002013_110|CS202002013_111|CS202002013_112|CS202002013_113|CS202002013_114|CS202002013_115|CS202002013_116 +,,RNAseq 103-112,CS202002013_220,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_103|CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_108|CS202002013_109|CS202002013_110|CS202002013_111|CS202002013_112 +,,RNAseq 104-112,CS202002013_221,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_108|CS202002013_109|CS202002013_110|CS202002013_111|CS202002013_112 +VLMC,VLMC,RNAseq 104-110,CS202002013_222,VLMC,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_108|CS202002013_109|CS202002013_110 +,,RNAseq 104-107,CS202002013_223,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107 +,,RNAseq 104-105,CS202002013_224,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_104|CS202002013_105 +,,RNAseq 106-107,CS202002013_225,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_106|CS202002013_107 +,,RNAseq 108-110,CS202002013_226,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_108|CS202002013_109|CS202002013_110 +,,RNAseq 108-109,CS202002013_227,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_108|CS202002013_109 +,,RNAseq 111-112,CS202002013_228,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_111|CS202002013_112 +Micro-PVM,Micro-PVM,RNAseq 113-116,CS202002013_229,Microglia-PVM,Microglia/PVM,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_113|CS202002013_114|CS202002013_115|CS202002013_116 +,,RNAseq 113-115,CS202002013_230,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_113|CS202002013_114|CS202002013_115 +,,RNAseq 114-115,CS202002013_231,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_114|CS202002013_115 +Sst,Sst,RNAseq 028-047,CS202002013_232,Sst,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_28|CS202002013_29|CS202002013_30|CS202002013_31|CS202002013_32|CS202002013_33|CS202002013_34|CS202002013_35|CS202002013_36|CS202002013_37|CS202002013_38|CS202002013_39|CS202002013_40|CS202002013_41|CS202002013_42|CS202002013_43|CS202002013_44|CS202002013_45|CS202002013_46|CS202002013_47 +Pvalb,Pvalb,RNAseq 048-057,CS202002013_233,Pvalb,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_48|CS202002013_49|CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53|CS202002013_54|CS202002013_55|CS202002013_56|CS202002013_57 +Non-IT projecting,Non-IT projecting,RNAseq 070-088,CS202002013_234,Non-IT projecting,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_70|CS202002013_71|CS202002013_72|CS202002013_73|CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80|CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85|CS202002013_86|CS202002013_87|CS202002013_88 +Non-Neuronal,Non-Neuronal,RNAseq 091-102,CS202002013_235,Non-neuronal,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_91|CS202002013_92|CS202002013_93|CS202002013_94|CS202002013_95|CS202002013_96|CS202002013_97|CS202002013_98|CS202002013_99|CS202002013_100|CS202002013_101|CS202002013_102 +Oligo-OPC,Oligo-OPC,"RNAseq 091,095-102",CS202002013_236,Oligodendrocyte-OPC,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_91|CS202002013_95|CS202002013_96|CS202002013_97|CS202002013_98|CS202002013_99|CS202002013_100|CS202002013_101|CS202002013_102 +PVM,PVM,RNAseq 114-116,CS202002013_237,PVM,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_114|CS202002013_115|CS202002013_116 +Lamp5_C2,Lamp5_C2,RNAseq 006-007,CS202002013_238,,Lamp5_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_6|CS202002013_7 +Sncg_C3,Sncg_C3,RNAseq 011-013,CS202002013_239,,Sncg_3,Nikolas 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Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_48|CS202002013_49 +L5 IT_C1,L5 IT_C1,"RNAseq 061-062, 065",CS202002013_249,,L5 IT_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_61|CS202002013_62|CS202002013_65 +L6 IT_C2,L6 IT_C2,"RNAseq 066, 068",CS202002013_250,,L6 IT_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_66|CS202002013_68 +L5 ET_C1,L5 ET_C1,"RNAseq 070, 072-073",CS202002013_251,,L5 ET_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_70|CS202002013_72|CS202002013_73 +L6 CT_C1,L6 CT_C1,"RNAseq 075, 077-081",CS202002013_252,,L6 CT_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_75|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80|CS202002013_81 +Oligo_C2,Oligo_C2,"RNAseq 098, 110-112",CS202002013_253,,Oligo_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_98|CS202002013_110|CS202002013_111|CS202002013_112 +VLMC(i),VLMC(i),"RNAseq 104-107, 110",CS202002013_254,,VLMC(i),Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_110 +Large CCK basket cell,Large CCK basket cell,RNAseq 009-012,CS202002013_255,,Large CCK basket cell,Federico Scala,10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_9|CS202002013_10|CS202002013_11|CS202002013_12 +L5 T Martinotti cell,L5 T Martinotti cell,RNAseq 030-032,CS202002013_256,,L5 T Martinotti cell,Federico Scala,10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_30|CS202002013_31|CS202002013_32 +Lower FS Basket cell,Lower FS Basket cell,RNAseq 049-053,CS202002013_257,,Lower FS Basket cell,Federico Scala,10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_49|CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53 \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202002270.csv b/src/dendrograms/nomenclature_table_CCN202002270.csv index f7da2089..f9bffb7e 100644 --- a/src/dendrograms/nomenclature_table_CCN202002270.csv +++ b/src/dendrograms/nomenclature_table_CCN202002270.csv @@ -12,7 +12,7 @@ Vip_1,Vip_1,Integrated 10,CS202002270_10,,,Nikolas Jorstad,10.1101/2020.03.31.01 Vip_2,Vip_2,Integrated 11,CS202002270_11,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, Vip_3,Vip_3,Integrated 12,CS202002270_12,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, Vip_4,Vip_4,Integrated 13,CS202002270_13,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Sst Chodl,Sst Chodl,Integrated 14,CS202002270_14,Sst Chodl,Long-range projecting Sst,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +Sst Chodl,Sst Chodl,Integrated 14,CS202002270_14,,Long-range projecting Sst,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, Sst_1,Sst_1,Integrated 15,CS202002270_15,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, Sst_2,Sst_2,Integrated 16,CS202002270_16,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, Sst_4,Sst_4,Integrated 17,CS202002270_17,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, @@ -23,7 +23,7 @@ Sst_7,Sst_7,Integrated 21,CS202002270_21,,,Nikolas Jorstad,10.1101/2020.03.31.01 Pvalb_1,Pvalb_1,Integrated 22,CS202002270_22,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, Pvalb_2,Pvalb_2,Integrated 23,CS202002270_23,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, Chandelier,Chandelier,Integrated 24,CS202002270_24,Chandelier,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -L2/3 IT,L2/3 IT,Integrated 25,CS202002270_25,L2/3 IT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +L2/3 IT,L2/3 IT,Integrated 25,CS202002270_25,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, L6 IT_1,L6 IT_1,Integrated 26,CS202002270_26,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, L6 IT_2,L6 IT_2,Integrated 27,CS202002270_27,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, L5 IT_1,L5 IT_1,Integrated 28,CS202002270_28,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, @@ -35,7 +35,7 @@ L5 ET_2,L5 ET_2,Integrated 33,CS202002270_33,,,Nikolas Jorstad,10.1101/2020.03.3 L6 CT_1,L6 CT_1,Integrated 34,CS202002270_34,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, L6 CT_2,L6 CT_2,Integrated 35,CS202002270_35,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, L6b,L6b,Integrated 36,CS202002270_36,L6b,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -L5/6 NP,L5/6 NP,Integrated 37,CS202002270_37,L5/6 NP,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, +L5/6 NP,L5/6 NP,Integrated 37,CS202002270_37,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, OPC,OPC,Integrated 38,CS202002270_38,OPC,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, Astro_1,Astro_1,Integrated 39,CS202002270_39,,ILA / fibrous astrocyte,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, Astro_2,Astro_2,Integrated 40,CS202002270_40,,Protoplasmic astrocyte,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, @@ -44,23 +44,16 @@ Oligo_2,Oligo_2,Integrated 42,CS202002270_42,,,Nikolas Jorstad,10.1101/2020.03.3 Endo,Endo,Integrated 43,CS202002270_43,Endothelial,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, VLMC,VLMC,Integrated 44,CS202002270_44,VLMC,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, Microglia/PVM,Microglia/PVM,Integrated 45,CS202002270_45,Microglia-PVM,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Lamp5,Lamp5,"Integrated 01-04, 07",CS202002270_46,Lamp5,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Sncg,Sncg,"Integrated 05-06, 08-09",CS202002270_47,Sncg,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Vip,Vip,Integrated 10-13,CS202002270_48,Vip,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Sst,Sst,Integrated 14-21,CS202002270_49,Sst,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Pvalb,Pvalb,Integrated 22-24,CS202002270_50,Pvalb,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -L6 IT,L6 IT,"Integrated 26-27, 31",CS202002270_51,L6 IT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -L5 IT,L5 IT,Integrated 28-30,CS202002270_52,L5 IT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -L5 ET,L5 ET,Integrated 32-33,CS202002270_53,L5 ET,Betz|L5 PT,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -L6 CT,L6 CT,Integrated 34-35,CS202002270_54,L6 CT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Astro,Astro,Integrated 39-40,CS202002270_55,Astrocyte,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Oligo,Oligo,Integrated 41-42,CS202002270_56,Oligodendrocyte,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -CGE/PoA,CGE/PoA,Integrated 01-13,CS202002270_57,CGE/PoA,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -MGE,MGE,Integrated 14-24,CS202002270_58,MGE,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -IT projecting,IT projecting,Integrated 25-31,CS202002270_59,IT projecting,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Non-IT projecting,Non-IT projecting,Integrated 32-37,CS202002270_60,Non-IT projecting,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Oligo-OPC,Oligo-OPC,"Integrated 38, 41-42",CS202002270_61,Oligodendrocyte-OPC,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Other NN,Other NN,Integrated 43-45,CS202002270_62,Non-neural,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -GABAergic,GABAergic,Integrated 01-24,CS202002270_63,Neuronal: GABAergic,Inhibitory,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Glutamatergic,Glutamatergic,Integrated 25-37,CS202002270_64,Neuronal: Glutamatergic,Excitatory,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Non-Neuronal,Non-Neuronal,Integrated 38-42,CS202002270_65,Non-neuronal,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, \ No newline at end of file +L5 ET,L5 ET,Integrated 32-33,CS202002270_53,L5 ET,Betz|L5 PT,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_32|CS202002270_33 +Astro,Astro,Integrated 39-40,CS202002270_55,Astrocyte,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_39|CS202002270_40 +Oligo,Oligo,Integrated 41-42,CS202002270_56,Oligodendrocyte,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_41|CS202002270_42 +CGE/PoA,CGE/PoA,Integrated 01-13,CS202002270_57,CGE/PoA,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_1|CS202002270_2|CS202002270_3|CS202002270_4|CS202002270_5|CS202002270_6|CS202002270_7|CS202002270_8|CS202002270_9|CS202002270_10|CS202002270_11|CS202002270_12|CS202002270_13 +MGE,MGE,Integrated 14-24,CS202002270_58,MGE,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_14|CS202002270_15|CS202002270_16|CS202002270_17|CS202002270_18|CS202002270_19|CS202002270_20|CS202002270_21|CS202002270_22|CS202002270_23|CS202002270_24 +IT projecting,IT projecting,Integrated 25-31,CS202002270_59,IT projecting,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_25|CS202002270_26|CS202002270_27|CS202002270_28|CS202002270_29|CS202002270_30|CS202002270_31 +Non-IT projecting,Non-IT projecting,Integrated 32-37,CS202002270_60,Non-IT projecting,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_32|CS202002270_33|CS202002270_34|CS202002270_35|CS202002270_36|CS202002270_37 +Oligo-OPC,Oligo-OPC,"Integrated 38, 41-42",CS202002270_61,Oligodendrocyte-OPC,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_38|CS202002270_41|CS202002270_42 +Other NN,Other NN,Integrated 43-45,CS202002270_62,Non-neural,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_43|CS202002270_44|CS202002270_45 +GABAergic,GABAergic,Integrated 01-24,CS202002270_63,Neuronal: GABAergic,Inhibitory,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_1|CS202002270_2|CS202002270_3|CS202002270_4|CS202002270_5|CS202002270_6|CS202002270_7|CS202002270_8|CS202002270_9|CS202002270_10|CS202002270_11|CS202002270_12|CS202002270_13|CS202002270_14|CS202002270_15|CS202002270_16|CS202002270_17|CS202002270_18|CS202002270_19|CS202002270_20|CS202002270_21|CS202002270_22|CS202002270_23|CS202002270_24 +Glutamatergic,Glutamatergic,Integrated 25-37,CS202002270_64,Neuronal: Glutamatergic,Excitatory,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_25|CS202002270_26|CS202002270_27|CS202002270_28|CS202002270_29|CS202002270_30|CS202002270_31|CS202002270_32|CS202002270_33|CS202002270_34|CS202002270_35|CS202002270_36|CS202002270_37 +Non-Neuronal,Non-Neuronal,Integrated 38-42,CS202002270_65,Non-neuronal,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_38|CS202002270_39|CS202002270_40|CS202002270_41|CS202002270_42 +,All cells,Integrated 01-45,CS202002270_66,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_1|CS202002270_2|CS202002270_3|CS202002270_4|CS202002270_5|CS202002270_6|CS202002270_7|CS202002270_8|CS202002270_9|CS202002270_10|CS202002270_11|CS202002270_12|CS202002270_13|CS202002270_14|CS202002270_15|CS202002270_16|CS202002270_17|CS202002270_18|CS202002270_19|CS202002270_20|CS202002270_21|CS202002270_22|CS202002270_23|CS202002270_24|CS202002270_25|CS202002270_26|CS202002270_27|CS202002270_28|CS202002270_29|CS202002270_30|CS202002270_31|CS202002270_32|CS202002270_33|CS202002270_34|CS202002270_35|CS202002270_36|CS202002270_37|CS202002270_38|CS202002270_39|CS202002270_40|CS202002270_41|CS202002270_42|CS202002270_43|CS202002270_44|CS202002270_45 \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202002271.csv b/src/dendrograms/nomenclature_table_CCN202002271.csv index 16c90989..3820f42c 100644 --- a/src/dendrograms/nomenclature_table_CCN202002271.csv +++ b/src/dendrograms/nomenclature_table_CCN202002271.csv @@ -12,55 +12,10 @@ Exc L5 SLC17A7 OTOGL,Exc L5 SLC17A7 OTOGL,RNAseq 010,CS202002271_10,,,Nikolas Jo Exc L5 SLC17A7 LOC114680213,Exc L5 SLC17A7 LOC114680213,RNAseq 011,CS202002271_11,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, Exc L5 SLC17A7 CORIN,Exc L5 SLC17A7 CORIN,RNAseq 012,CS202002271_12,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, Exc L5 SLC17A7 TLL1,Exc L5 SLC17A7 TLL1,RNAseq 013,CS202002271_13,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, -L5 ET,L5 ET,RNAseq 001-002,CS202002271_14,L5 ET,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, -L5 IT,L5 IT,RNAseq 003-005,CS202002271_15,L5 IT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, -L6b,L6b,RNAseq 009-010,CS202002271_16,L6b,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, -L5/6 NP,L5/6 NP,RNAseq 011-013,CS202002271_17,L5/6 NP,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, -Non-IT projecting,Non-IT projecting,"RNAseq 001-002, 008-013",CS202002271_18,Non-IT projecting,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, -IT projecting,IT projecting,RNAseq 003-007,CS202002271_19,IT projecting,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, -Glutamatergic,Glutamatergic,RNAseq 001-013,CS202002271_20,Neuronal: Glutamatergic,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, \ No newline at end of file +L5 ET,L5 ET,RNAseq 001-002,CS202002271_14,L5 ET,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq,CS202002271_1|CS202002271_2 +L5 IT,L5 IT,RNAseq 003-005,CS202002271_15,L5 IT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq,CS202002271_3|CS202002271_4|CS202002271_5 +L6b,L6b,RNAseq 009-010,CS202002271_16,L6b,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq,CS202002271_9|CS202002271_10 +L5/6 NP,L5/6 NP,RNAseq 011-013,CS202002271_17,L5/6 NP,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq,CS202002271_11|CS202002271_12|CS202002271_13 +Non-IT projecting,Non-IT projecting,"RNAseq 001-002, 008-013",CS202002271_18,Non-IT projecting,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq,CS202002271_1|CS202002271_2|CS202002271_8|CS202002271_9|CS202002271_10|CS202002271_11|CS202002271_12|CS202002271_13 +IT projecting,IT projecting,RNAseq 003-007,CS202002271_19,IT projecting,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq,CS202002271_3|CS202002271_4|CS202002271_5|CS202002271_6|CS202002271_7 +Glutamatergic,Glutamatergic,RNAseq 001-013,CS202002271_20,Neuronal: Glutamatergic,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq,CS202002271_1|CS202002271_2|CS202002271_3|CS202002271_4|CS202002271_5|CS202002271_6|CS202002271_7|CS202002271_8|CS202002271_9|CS202002271_10|CS202002271_11|CS202002271_12|CS202002271_13 \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202002272.csv b/src/dendrograms/nomenclature_table_CCN202002272.csv index 5c3880d2..2a2d6e67 100644 --- a/src/dendrograms/nomenclature_table_CCN202002272.csv +++ b/src/dendrograms/nomenclature_table_CCN202002272.csv @@ -30,37 +30,18 @@ Oligo-OPC L1-6 OPALIN PLP1,Oligo-OPC L1-6 OPALIN PLP1,DNAm 28,CS202002272_28,Oli Astro L1-6 FGFR3 RNF219-AS1,Astro L1-6 FGFR3 RNF219-AS1,DNAm 29,CS202002272_29,Astrocyte,RNAseq 122-124 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, Glia L1-5 NOSTRIN MECOM,Glia L1-5 NOSTRIN MECOM,DNAm 30,CS202002272_30,,RNAseq 125-126 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, Micro L1-6 TYROBP CD74,Micro L1-6 TYROBP CD74,DNAm 31,CS202002272_31,Microglia-PVM,RNAseq 127 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Lamp5,Lamp5,DNAm 01-03,CS202002272_32,Lamp5,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Sncg,Sncg,DNAm 04-05,CS202002272_33,Sncg,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Vip,Vip,DNAm 06-11,CS202002272_34,Vip,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Sst,Sst,DNAm 12-14,CS202002272_35,Sst,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Pvalb,Pvalb,DNAm 15-17,CS202002272_36,Pvalb,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -L5 IT,L5 IT,"DNAm 20, 22",CS202002272_37,L5 IT,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Non-neuronal,Non-neuronal,DNAm 28-29,CS202002272_38,Non-neuronal,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Neuronal: GABAergic,Neuronal: GABAergic,DNAm 01-17,CS202002272_39,Neuronal: GABAergic,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Neuronal: Glutamatergic,Neuronal: Glutamatergic,DNAm 18-27,CS202002272_40,Neuronal: Glutamatergic,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Non-neural,Non-neural,DNAm 30-31,CS202002272_41,Non-neural,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -CGE/PoA,CGE/PoA,DNAm 01-11,CS202002272_42,CGE/PoA,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -MGE,MGE,DNAm 12-17,CS202002272_43,MGE,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -IT projecting,IT projecting,DNAm 18-23,CS202002272_44,IT projecting,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Non-IT projecting,Non-IT projecting,DNAm 24-27,CS202002272_45,Non-IT projecting,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, \ No newline at end of file +Lamp5,Lamp5,DNAm 01-03,CS202002272_32,Lamp5,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_1|CS202002272_2|CS202002272_3 +Sncg,Sncg,DNAm 04-05,CS202002272_33,Sncg,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_4|CS202002272_5 +Vip,Vip,DNAm 06-11,CS202002272_34,Vip,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_6|CS202002272_7|CS202002272_8|CS202002272_9|CS202002272_10|CS202002272_11 +Sst,Sst,DNAm 12-14,CS202002272_35,Sst,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_12|CS202002272_13|CS202002272_14 +Pvalb,Pvalb,DNAm 15-17,CS202002272_36,Pvalb,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_15|CS202002272_16|CS202002272_17 +L5 IT,L5 IT,"DNAm 20, 22",CS202002272_37,L5 IT,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_20|CS202002272_22 +Non-neuronal,Non-neuronal,DNAm 28-29,CS202002272_38,Non-neuronal,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_28|CS202002272_29 +Neuronal: GABAergic,Neuronal: GABAergic,DNAm 01-17,CS202002272_39,Neuronal: GABAergic,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_1|CS202002272_2|CS202002272_3|CS202002272_4|CS202002272_5|CS202002272_6|CS202002272_7|CS202002272_8|CS202002272_9|CS202002272_10|CS202002272_11|CS202002272_12|CS202002272_13|CS202002272_14|CS202002272_15|CS202002272_16|CS202002272_17 +Neuronal: Glutamatergic,Neuronal: Glutamatergic,DNAm 18-27,CS202002272_40,Neuronal: Glutamatergic,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_18|CS202002272_19|CS202002272_20|CS202002272_21|CS202002272_22|CS202002272_23|CS202002272_24|CS202002272_25|CS202002272_26|CS202002272_27 +Non-neural,Non-neural,DNAm 30-31,CS202002272_41,Non-neural,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_30|CS202002272_31 +CGE/PoA,CGE/PoA,DNAm 01-11,CS202002272_42,CGE/PoA,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_1|CS202002272_2|CS202002272_3|CS202002272_4|CS202002272_5|CS202002272_6|CS202002272_7|CS202002272_8|CS202002272_9|CS202002272_10|CS202002272_11 +MGE,MGE,DNAm 12-17,CS202002272_43,MGE,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_12|CS202002272_13|CS202002272_14|CS202002272_15|CS202002272_16|CS202002272_17 +IT projecting,IT projecting,DNAm 18-23,CS202002272_44,IT projecting,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_18|CS202002272_19|CS202002272_20|CS202002272_21|CS202002272_22|CS202002272_23 +Non-IT projecting,Non-IT projecting,DNAm 24-27,CS202002272_45,Non-IT projecting,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_24|CS202002272_25|CS202002272_26|CS202002272_27 +,All cells,DNAm 01-31,CS202002272_46,,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_1|CS202002272_2|CS202002272_3|CS202002272_4|CS202002272_5|CS202002272_6|CS202002272_7|CS202002272_8|CS202002272_9|CS202002272_10|CS202002272_11|CS202002272_12|CS202002272_13|CS202002272_14|CS202002272_15|CS202002272_16|CS202002272_17|CS202002272_18|CS202002272_19|CS202002272_20|CS202002272_21|CS202002272_22|CS202002272_23|CS202002272_24|CS202002272_25|CS202002272_26|CS202002272_27|CS202002272_28|CS202002272_29|CS202002272_30|CS202002272_31 \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202002273.csv b/src/dendrograms/nomenclature_table_CCN202002273.csv index 8a202317..e0259c0b 100644 --- a/src/dendrograms/nomenclature_table_CCN202002273.csv +++ b/src/dendrograms/nomenclature_table_CCN202002273.csv @@ -41,26 +41,20 @@ Astro L1-6 FGFR3 AQP1,Astro L1-6 FGFR3 AQP1,ATACseq 39,CS202002273_39,,"RNAseq 1 Astro L1 FGFR3 SERPINI2,Astro L1 FGFR3 SERPINI2,ATACseq 40,CS202002273_40,,RNAseq 123 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, Glia L1-5 NOSTRIN MECOM,Glia L1-5 NOSTRIN MECOM,ATACseq 41,CS202002273_41,,RNAseq 125-126 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, Micro L1-6 TYROBP CD74,Micro L1-6 TYROBP CD74,ATACseq 42,CS202002273_42,Microglia-PVM,RNAseq 127 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Lamp5,Lamp5,"ATACseq 01, 03",CS202002273_43,Lamp5,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Sncg,Sncg,"ATACseq 02, 04",CS202002273_44,Sncg,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Vip,Vip,ATACseq 05-07,CS202002273_45,Vip,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Sst,Sst,ATACseq 09-13,CS202002273_46,Sst,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Pvalb,Pvalb,ATACseq 14-18,CS202002273_47,Pvalb,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -L2/3 IT,L2/3 IT,ATACseq 19-25,CS202002273_48,L2/3 IT,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -L5 IT,L5 IT,ATACseq 26-28,CS202002273_49,L5 IT,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Astrocyte,Astrocyte,ATACseq 39-40,CS202002273_50,Astrocyte,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Non-neuronal,Non-neuronal,ATACseq 36-40,CS202002273_51,Non-neuronal,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Neuronal: GABAergic,Neuronal: GABAergic,ATACseq 01-18,CS202002273_52,Neuronal: GABAergic,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Neuronal: Glutamatergic,Neuronal: Glutamatergic,ATACseq 19-35,CS202002273_53,Neuronal: Glutamatergic,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Non-neural,Non-neural,ATACseq 41-42,CS202002273_54,Non-neural,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -CGE/PoA,CGE/PoA,ATACseq 01-07,CS202002273_55,CGE/PoA,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -MGE,MGE,ATACseq 08-18,CS202002273_56,MGE,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -IT projecting,IT projecting,ATACseq 19-30,CS202002273_57,IT projecting,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Non-IT projecting,Non-IT projecting,ATACseq 31-35,CS202002273_58,Non-IT projecting,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, \ No newline at end of file +Lamp5,Lamp5,"ATACseq 01, 03",CS202002273_43,Lamp5,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_1|CS202002273_3 +Sncg,Sncg,"ATACseq 02, 04",CS202002273_44,Sncg,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_2|CS202002273_4 +Vip,Vip,ATACseq 05-07,CS202002273_45,Vip,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_5|CS202002273_6|CS202002273_7 +Sst,Sst,ATACseq 09-13,CS202002273_46,Sst,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_9|CS202002273_10|CS202002273_11|CS202002273_12|CS202002273_13 +Pvalb,Pvalb,ATACseq 14-18,CS202002273_47,Pvalb,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_14|CS202002273_15|CS202002273_16|CS202002273_17|CS202002273_18 +L2/3 IT,L2/3 IT,ATACseq 19-25,CS202002273_48,L2/3 IT,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_19|CS202002273_20|CS202002273_21|CS202002273_22|CS202002273_23|CS202002273_24|CS202002273_25 +L5 IT,L5 IT,ATACseq 26-28,CS202002273_49,L5 IT,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_26|CS202002273_27|CS202002273_28 +Astrocyte,Astrocyte,ATACseq 39-40,CS202002273_50,Astrocyte,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_39|CS202002273_40 +Non-neuronal,Non-neuronal,ATACseq 36-40,CS202002273_51,Non-neuronal,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_36|CS202002273_37|CS202002273_38|CS202002273_39|CS202002273_40 +Neuronal: GABAergic,Neuronal: GABAergic,ATACseq 01-18,CS202002273_52,Neuronal: GABAergic,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_1|CS202002273_2|CS202002273_3|CS202002273_4|CS202002273_5|CS202002273_6|CS202002273_7|CS202002273_8|CS202002273_9|CS202002273_10|CS202002273_11|CS202002273_12|CS202002273_13|CS202002273_14|CS202002273_15|CS202002273_16|CS202002273_17|CS202002273_18 +Neuronal: Glutamatergic,Neuronal: Glutamatergic,ATACseq 19-35,CS202002273_53,Neuronal: Glutamatergic,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_19|CS202002273_20|CS202002273_21|CS202002273_22|CS202002273_23|CS202002273_24|CS202002273_25|CS202002273_26|CS202002273_27|CS202002273_28|CS202002273_29|CS202002273_30|CS202002273_31|CS202002273_32|CS202002273_33|CS202002273_34|CS202002273_35 +Non-neural,Non-neural,ATACseq 41-42,CS202002273_54,Non-neural,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_41|CS202002273_42 +CGE/PoA,CGE/PoA,ATACseq 01-07,CS202002273_55,CGE/PoA,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_1|CS202002273_2|CS202002273_3|CS202002273_4|CS202002273_5|CS202002273_6|CS202002273_7 +MGE,MGE,ATACseq 08-18,CS202002273_56,MGE,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_8|CS202002273_9|CS202002273_10|CS202002273_11|CS202002273_12|CS202002273_13|CS202002273_14|CS202002273_15|CS202002273_16|CS202002273_17|CS202002273_18 +IT projecting,IT projecting,ATACseq 19-30,CS202002273_57,IT projecting,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_19|CS202002273_20|CS202002273_21|CS202002273_22|CS202002273_23|CS202002273_24|CS202002273_25|CS202002273_26|CS202002273_27|CS202002273_28|CS202002273_29|CS202002273_30 +Non-IT projecting,Non-IT projecting,ATACseq 31-35,CS202002273_58,Non-IT projecting,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_31|CS202002273_32|CS202002273_33|CS202002273_34|CS202002273_35 +,All cells,ATACseq 01-42,CS202002273_59,,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_1|CS202002273_2|CS202002273_3|CS202002273_4|CS202002273_5|CS202002273_6|CS202002273_7|CS202002273_8|CS202002273_9|CS202002273_10|CS202002273_11|CS202002273_12|CS202002273_13|CS202002273_14|CS202002273_15|CS202002273_16|CS202002273_17|CS202002273_18|CS202002273_19|CS202002273_20|CS202002273_21|CS202002273_22|CS202002273_23|CS202002273_24|CS202002273_25|CS202002273_26|CS202002273_27|CS202002273_28|CS202002273_29|CS202002273_30|CS202002273_31|CS202002273_32|CS202002273_33|CS202002273_34|CS202002273_35|CS202002273_36|CS202002273_37|CS202002273_38|CS202002273_39|CS202002273_40|CS202002273_41|CS202002273_42 \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202002274.csv b/src/dendrograms/nomenclature_table_CCN202002274.csv index be368adb..e58464ba 100644 --- a/src/dendrograms/nomenclature_table_CCN202002274.csv +++ b/src/dendrograms/nomenclature_table_CCN202002274.csv @@ -32,35 +32,17 @@ Exc FEZF2 TSHZ2,Exc FEZF2 TSHZ2,DNAm 30,CS202002274_30,L5/6 NP,RNAseq 76 in CCN2 Glia SLC1A3 LOC103788313,Glia SLC1A3 LOC103788313,DNAm 31,CS202002274_31,,"RNAseq 77, 94 in CCN201912132",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, Glia OPALIN ST18,Glia OPALIN ST18,DNAm 32,CS202002274_32,,"RNAseq 78, 83-84, 88-93 in CCN201912132",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, Glia RORB SLC1A2,Glia RORB SLC1A2,DNAm 33,CS202002274_33,,RNAseq 79-87 in CCN201912132|Astrocyte+Endothelial,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Lamp5,Lamp5,DNAm 01-03,CS202002274_34,Lamp5,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Sncg,Sncg,DNAm 04-05,CS202002274_35,Sncg,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Vip,Vip,DNAm 06-09,CS202002274_36,Vip,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Sst,Sst,DNAm 10-12,CS202002274_37,Sst,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Pvalb,Pvalb,DNAm 13-16,CS202002274_38,Pvalb,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -L5 IT,L5 IT,DNAm 20-24,CS202002274_39,L5 IT,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -L6 CT,L6 CT,DNAm 26-27,CS202002274_40,L6 CT,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Neuronal: GABAergic,Neuronal: GABAergic,DNAm 01-16,CS202002274_41,Neuronal: GABAergic,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Neuronal: Glutamatergic,Neuronal: Glutamatergic,DNAm 17-30,CS202002274_42,Neuronal: Glutamatergic,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -CGE/PoA,CGE/PoA,DNAm 01-09,CS202002274_43,CGE/PoA,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -MGE,MGE,DNAm 10-16,CS202002274_44,MGE,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -IT projecting,IT projecting,"DNAm 17-24, 29",CS202002274_45,IT projecting,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Non-IT projecting,Non-IT projecting,"DNAm 25-28, 30",CS202002274_46,Non-IT projecting,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, \ No newline at end of file +Lamp5,Lamp5,DNAm 01-03,CS202002274_34,Lamp5,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_1|CS202002274_2|CS202002274_3 +Sncg,Sncg,DNAm 04-05,CS202002274_35,Sncg,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_4|CS202002274_5 +Vip,Vip,DNAm 06-09,CS202002274_36,Vip,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_6|CS202002274_7|CS202002274_8|CS202002274_9 +Sst,Sst,DNAm 10-12,CS202002274_37,Sst,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_10|CS202002274_11|CS202002274_12 +Pvalb,Pvalb,DNAm 13-16,CS202002274_38,Pvalb,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_13|CS202002274_14|CS202002274_15|CS202002274_16 +L5 IT,L5 IT,DNAm 20-24,CS202002274_39,L5 IT,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_20|CS202002274_21|CS202002274_22|CS202002274_23|CS202002274_24 +L6 CT,L6 CT,DNAm 26-27,CS202002274_40,L6 CT,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_26|CS202002274_27 +Neuronal: GABAergic,Neuronal: GABAergic,DNAm 01-16,CS202002274_41,Neuronal: GABAergic,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_1|CS202002274_2|CS202002274_3|CS202002274_4|CS202002274_5|CS202002274_6|CS202002274_7|CS202002274_8|CS202002274_9|CS202002274_10|CS202002274_11|CS202002274_12|CS202002274_13|CS202002274_14|CS202002274_15|CS202002274_16 +Neuronal: Glutamatergic,Neuronal: Glutamatergic,DNAm 17-30,CS202002274_42,Neuronal: Glutamatergic,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_17|CS202002274_18|CS202002274_19|CS202002274_20|CS202002274_21|CS202002274_22|CS202002274_23|CS202002274_24|CS202002274_25|CS202002274_26|CS202002274_27|CS202002274_28|CS202002274_29|CS202002274_30 +CGE/PoA,CGE/PoA,DNAm 01-09,CS202002274_43,CGE/PoA,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_1|CS202002274_2|CS202002274_3|CS202002274_4|CS202002274_5|CS202002274_6|CS202002274_7|CS202002274_8|CS202002274_9 +MGE,MGE,DNAm 10-16,CS202002274_44,MGE,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_10|CS202002274_11|CS202002274_12|CS202002274_13|CS202002274_14|CS202002274_15|CS202002274_16 +IT projecting,IT projecting,"DNAm 17-24, 29",CS202002274_45,IT projecting,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_17|CS202002274_18|CS202002274_19|CS202002274_20|CS202002274_21|CS202002274_22|CS202002274_23|CS202002274_24|CS202002274_29 +Non-IT projecting,Non-IT projecting,"DNAm 25-28, 30",CS202002274_46,Non-IT projecting,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_25|CS202002274_26|CS202002274_27|CS202002274_28|CS202002274_30 +,All cells,DNAm 01-33,CS202002274_47,,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_1|CS202002274_2|CS202002274_3|CS202002274_4|CS202002274_5|CS202002274_6|CS202002274_7|CS202002274_8|CS202002274_9|CS202002274_10|CS202002274_11|CS202002274_12|CS202002274_13|CS202002274_14|CS202002274_15|CS202002274_16|CS202002274_17|CS202002274_18|CS202002274_19|CS202002274_20|CS202002274_21|CS202002274_22|CS202002274_23|CS202002274_24|CS202002274_25|CS202002274_26|CS202002274_27|CS202002274_28|CS202002274_29|CS202002274_30|CS202002274_31|CS202002274_32|CS202002274_33 \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202002275.csv b/src/dendrograms/nomenclature_table_CCN202002275.csv index cc7083eb..5fd6df8a 100644 --- a/src/dendrograms/nomenclature_table_CCN202002275.csv +++ b/src/dendrograms/nomenclature_table_CCN202002275.csv @@ -22,45 +22,15 @@ Oligo OPALIN ST18,Oligo OPALIN ST18,ATACseq 20,CS202002275_20,Oligodendrocyte,"R OPC PDGFRA VCAN,OPC PDGFRA VCAN,ATACseq 21,CS202002275_21,OPC,RNAseq 78 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, Astro RORB SLC1A2,Astro RORB SLC1A2,ATACseq 22,CS202002275_22,Astrocyte,RNAseq 79-82 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, Glia SLC1A3 FLT1,Glia SLC1A3 FLT1,ATACseq 23,CS202002275_23,Non-neural,RNAseq 85-94 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -Pvalb,Pvalb,ATACseq 05-06,CS202002275_24,Pvalb,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -L2/3 IT,L2/3 IT,ATACseq 07-08,CS202002275_25,L2/3 IT,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -L5 IT,L5 IT,ATACseq 10-14,CS202002275_26,L5 IT,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -Oligodendrocyte-OPC,Oligodendrocyte-OPC,ATACseq 20-21,CS202002275_27,Oligodendrocyte-OPC,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -Non-neuronal,Non-neuronal,ATACseq 20-22,CS202002275_28,Non-neuronal,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -Neuronal: GABAergic,Neuronal: GABAergic,ATACseq 01-06,CS202002275_29,Neuronal: GABAergic,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -Neuronal: Glutamatergic,Neuronal: Glutamatergic,ATACseq 07-19,CS202002275_30,Neuronal: Glutamatergic,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -CGE/PoA,CGE/PoA,ATACseq 01-03,CS202002275_31,CGE/PoA,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -MGE,MGE,ATACseq 04-06,CS202002275_32,MGE,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -IT projecting,IT projecting,"ATACseq 07-14, 18",CS202002275_33,IT projecting,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -Non-IT projecting,Non-IT projecting,"ATACseq 15-17, 19",CS202002275_34,Non-IT projecting,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, \ No newline at end of file +Pvalb,Pvalb,ATACseq 05-06,CS202002275_24,Pvalb,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_5|CS202002275_6 +L2/3 IT,L2/3 IT,ATACseq 07-08,CS202002275_25,L2/3 IT,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_7|CS202002275_8 +L5 IT,L5 IT,ATACseq 10-14,CS202002275_26,L5 IT,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_10|CS202002275_11|CS202002275_12|CS202002275_13|CS202002275_14 +Oligodendrocyte-OPC,Oligodendrocyte-OPC,ATACseq 20-21,CS202002275_27,Oligodendrocyte-OPC,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_20|CS202002275_21 +Non-neuronal,Non-neuronal,ATACseq 20-22,CS202002275_28,Non-neuronal,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_20|CS202002275_21|CS202002275_22 +Neuronal: GABAergic,Neuronal: GABAergic,ATACseq 01-06,CS202002275_29,Neuronal: GABAergic,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_1|CS202002275_2|CS202002275_3|CS202002275_4|CS202002275_5|CS202002275_6 +Neuronal: Glutamatergic,Neuronal: Glutamatergic,ATACseq 07-19,CS202002275_30,Neuronal: Glutamatergic,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_7|CS202002275_8|CS202002275_9|CS202002275_10|CS202002275_11|CS202002275_12|CS202002275_13|CS202002275_14|CS202002275_15|CS202002275_16|CS202002275_17|CS202002275_18|CS202002275_19 +CGE/PoA,CGE/PoA,ATACseq 01-03,CS202002275_31,CGE/PoA,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_1|CS202002275_2|CS202002275_3 +MGE,MGE,ATACseq 04-06,CS202002275_32,MGE,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_4|CS202002275_5|CS202002275_6 +IT projecting,IT projecting,"ATACseq 07-14, 18",CS202002275_33,IT projecting,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_7|CS202002275_8|CS202002275_9|CS202002275_10|CS202002275_11|CS202002275_12|CS202002275_13|CS202002275_14|CS202002275_18 +Non-IT projecting,Non-IT projecting,"ATACseq 15-17, 19",CS202002275_34,Non-IT projecting,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_15|CS202002275_16|CS202002275_17|CS202002275_19 +,All cells,ATACseq 01-23,CS202002275_35,,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_1|CS202002275_2|CS202002275_3|CS202002275_4|CS202002275_5|CS202002275_6|CS202002275_7|CS202002275_8|CS202002275_9|CS202002275_10|CS202002275_11|CS202002275_12|CS202002275_13|CS202002275_14|CS202002275_15|CS202002275_16|CS202002275_17|CS202002275_18|CS202002275_19|CS202002275_20|CS202002275_21|CS202002275_22|CS202002275_23 \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202002276.csv b/src/dendrograms/nomenclature_table_CCN202002276.csv index c617350b..3b4b3876 100644 --- a/src/dendrograms/nomenclature_table_CCN202002276.csv +++ b/src/dendrograms/nomenclature_table_CCN202002276.csv @@ -42,25 +42,21 @@ VLMC Bnc2,VLMC Bnc2,DNAm 40,CS202002276_40,,"RNAseq 106, 108-110 in CCN202002013 SMC-Peri,SMC-Peri,DNAm 41,CS202002276_41,SMC,RNAseq 111-112 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, Micro-PVM Inpp5d,Micro-PVM Inpp5d,DNAm 42,CS202002276_42,Microglia-PVM,"RNAseq 113, 115-116 in CCN202002013",Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, VLMC,VLMC,DNAm 43,CS202002276_43,VLMC,RNAseq 104-110 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -Lamp5,Lamp5,DNAm 01-04,CS202002276_44,Lamp5,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -Vip,Vip,DNAm 06-08,CS202002276_45,Vip,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -Sst,Sst,DNAm 10-15,CS202002276_46,Sst,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -Pvalb,Pvalb,DNAm 16-19,CS202002276_47,Pvalb,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -L4/5 IT,L4/5 IT,DNAm 21-22,CS202002276_48,L4/5 IT,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -L5 IT,L5 IT,"DNAm 23, 25",CS202002276_49,L5 IT,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -L6 IT,L6 IT,"DNAm 24, 26",CS202002276_50,L6 IT,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -L6 CT,L6 CT,DNAm 29-33,CS202002276_51,L6 CT,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -Oligodendrocyte-OPC,Oligodendrocyte-OPC,"DNAm 36, 38",CS202002276_52,Oligodendrocyte-OPC,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -Non-neuronal,Non-neuronal,DNAm 36-38,CS202002276_53,Non-neuronal,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -Neuronal: GABAergic,Neuronal: GABAergic,DNAm 01-19,CS202002276_54,Neuronal: GABAergic,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -Neuronal: Glutamatergic,Neuronal: Glutamatergic,DNAm 20-35,CS202002276_55,Neuronal: Glutamatergic,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -Non-neural,Non-neural,DNAm 39-43,CS202002276_56,Non-neural,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -CGE/PoA,CGE/PoA,DNAm 01-08,CS202002276_57,CGE/PoA,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -MGE,MGE,DNAm 09-19,CS202002276_58,MGE,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -IT projecting,IT projecting,DNAm 20-27,CS202002276_59,IT projecting,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -Non-IT projecting,Non-IT projecting,DNAm 28-35,CS202002276_60,Non-IT projecting,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, \ No newline at end of file +Lamp5,Lamp5,DNAm 01-04,CS202002276_44,Lamp5,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_1|CS202002276_2|CS202002276_3|CS202002276_4 +Vip,Vip,DNAm 06-08,CS202002276_45,Vip,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_6|CS202002276_7|CS202002276_8 +Sst,Sst,DNAm 10-15,CS202002276_46,Sst,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_10|CS202002276_11|CS202002276_12|CS202002276_13|CS202002276_14|CS202002276_15 +Pvalb,Pvalb,DNAm 16-19,CS202002276_47,Pvalb,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_16|CS202002276_17|CS202002276_18|CS202002276_19 +L4/5 IT,L4/5 IT,DNAm 21-22,CS202002276_48,L4/5 IT,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_21|CS202002276_22 +L5 IT,L5 IT,"DNAm 23, 25",CS202002276_49,L5 IT,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_23|CS202002276_25 +L6 IT,L6 IT,"DNAm 24, 26",CS202002276_50,L6 IT,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_24|CS202002276_26 +L6 CT,L6 CT,DNAm 29-33,CS202002276_51,L6 CT,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_29|CS202002276_30|CS202002276_31|CS202002276_32|CS202002276_33 +Oligodendrocyte-OPC,Oligodendrocyte-OPC,"DNAm 36, 38",CS202002276_52,Oligodendrocyte-OPC,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_36|CS202002276_38 +Non-neuronal,Non-neuronal,DNAm 36-38,CS202002276_53,Non-neuronal,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_36|CS202002276_37|CS202002276_38 +Neuronal: GABAergic,Neuronal: GABAergic,DNAm 01-19,CS202002276_54,Neuronal: GABAergic,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_1|CS202002276_2|CS202002276_3|CS202002276_4|CS202002276_5|CS202002276_6|CS202002276_7|CS202002276_8|CS202002276_9|CS202002276_10|CS202002276_11|CS202002276_12|CS202002276_13|CS202002276_14|CS202002276_15|CS202002276_16|CS202002276_17|CS202002276_18|CS202002276_19 +Neuronal: Glutamatergic,Neuronal: Glutamatergic,DNAm 20-35,CS202002276_55,Neuronal: Glutamatergic,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_20|CS202002276_21|CS202002276_22|CS202002276_23|CS202002276_24|CS202002276_25|CS202002276_26|CS202002276_27|CS202002276_28|CS202002276_29|CS202002276_30|CS202002276_31|CS202002276_32|CS202002276_33|CS202002276_34|CS202002276_35 +Non-neural,Non-neural,DNAm 39-43,CS202002276_56,Non-neural,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_39|CS202002276_40|CS202002276_41|CS202002276_42|CS202002276_43 +CGE/PoA,CGE/PoA,DNAm 01-08,CS202002276_57,CGE/PoA,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_1|CS202002276_2|CS202002276_3|CS202002276_4|CS202002276_5|CS202002276_6|CS202002276_7|CS202002276_8 +MGE,MGE,DNAm 09-19,CS202002276_58,MGE,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_9|CS202002276_10|CS202002276_11|CS202002276_12|CS202002276_13|CS202002276_14|CS202002276_15|CS202002276_16|CS202002276_17|CS202002276_18|CS202002276_19 +IT projecting,IT projecting,DNAm 20-27,CS202002276_59,IT projecting,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_20|CS202002276_21|CS202002276_22|CS202002276_23|CS202002276_24|CS202002276_25|CS202002276_26|CS202002276_27 +Non-IT projecting,Non-IT projecting,DNAm 28-35,CS202002276_60,Non-IT projecting,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_28|CS202002276_29|CS202002276_30|CS202002276_31|CS202002276_32|CS202002276_33|CS202002276_34|CS202002276_35 +,All cells,DNAm 01-43,CS202002276_61,,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_1|CS202002276_2|CS202002276_3|CS202002276_4|CS202002276_5|CS202002276_6|CS202002276_7|CS202002276_8|CS202002276_9|CS202002276_10|CS202002276_11|CS202002276_12|CS202002276_13|CS202002276_14|CS202002276_15|CS202002276_16|CS202002276_17|CS202002276_18|CS202002276_19|CS202002276_20|CS202002276_21|CS202002276_22|CS202002276_23|CS202002276_24|CS202002276_25|CS202002276_26|CS202002276_27|CS202002276_28|CS202002276_29|CS202002276_30|CS202002276_31|CS202002276_32|CS202002276_33|CS202002276_34|CS202002276_35|CS202002276_36|CS202002276_37|CS202002276_38|CS202002276_39|CS202002276_40|CS202002276_41|CS202002276_42|CS202002276_43 \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202002277.csv b/src/dendrograms/nomenclature_table_CCN202002277.csv index 5fec5374..fa14fc66 100644 --- a/src/dendrograms/nomenclature_table_CCN202002277.csv +++ b/src/dendrograms/nomenclature_table_CCN202002277.csv @@ -30,37 +30,18 @@ Endo,Endo,ATACseq 28,CS202002277_28,Endothelial,RNAseq 103 in CCN202002013,Yang VLMC,VLMC,ATACseq 29,CS202002277_29,VLMC,RNAseq 104-110 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, SMC-Peri,SMC-Peri,ATACseq 30,CS202002277_30,,RNAseq 111-112 in CCN202002013|SMC+Pericyte,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, Micro-PVM,Micro-PVM,ATACseq 31,CS202002277_31,Microglia-PVM,RNAseq 113-116 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -Lamp5,Lamp5,ATACseq 01-03,CS202002277_32,Lamp5,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -Vip,Vip,ATACseq 06-09,CS202002277_33,Vip,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -Sst,Sst,ATACseq 11-13,CS202002277_34,Sst,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -Pvalb,Pvalb,ATACseq 14-16,CS202002277_35,Pvalb,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -L5 IT,L5 IT,ATACseq 19-20,CS202002277_36,L5 IT,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -Oligodendrocyte-OPC,Oligodendrocyte-OPC,"ATACseq 25, 27",CS202002277_37,Oligodendrocyte-OPC,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -Non-neuronal,Non-neuronal,ATACseq 25-27,CS202002277_38,Non-neuronal,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -Neuronal: GABAergic,Neuronal: GABAergic,ATACseq 01-16,CS202002277_39,Neuronal: GABAergic,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -Neuronal: Glutamatergic,Neuronal: Glutamatergic,ATACseq 17-24,CS202002277_40,Neuronal: Glutamatergic,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -Non-neural,Non-neural,ATACseq 28-31,CS202002277_41,Non-neural,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -CGE/PoA,CGE/PoA,ATACseq 01-09,CS202002277_42,CGE/PoA,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -MGE,MGE,ATACseq 10-16,CS202002277_43,MGE,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -IT projecting,IT projecting,ATACseq 17-21,CS202002277_44,IT projecting,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -Non-IT projecting,Non-IT projecting,ATACseq 22-24,CS202002277_45,Non-IT projecting,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, -,,,,,,,,,,,,, \ No newline at end of file +Lamp5,Lamp5,ATACseq 01-03,CS202002277_32,Lamp5,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_1|CS202002277_2|CS202002277_3 +Vip,Vip,ATACseq 06-09,CS202002277_33,Vip,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_6|CS202002277_7|CS202002277_8|CS202002277_9 +Sst,Sst,ATACseq 11-13,CS202002277_34,Sst,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_11|CS202002277_12|CS202002277_13 +Pvalb,Pvalb,ATACseq 14-16,CS202002277_35,Pvalb,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_14|CS202002277_15|CS202002277_16 +L5 IT,L5 IT,ATACseq 19-20,CS202002277_36,L5 IT,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_19|CS202002277_20 +Oligodendrocyte-OPC,Oligodendrocyte-OPC,"ATACseq 25, 27",CS202002277_37,Oligodendrocyte-OPC,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_25|CS202002277_27 +Non-neuronal,Non-neuronal,ATACseq 25-27,CS202002277_38,Non-neuronal,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_25|CS202002277_26|CS202002277_27 +Neuronal: GABAergic,Neuronal: GABAergic,ATACseq 01-16,CS202002277_39,Neuronal: GABAergic,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_1|CS202002277_2|CS202002277_3|CS202002277_4|CS202002277_5|CS202002277_6|CS202002277_7|CS202002277_8|CS202002277_9|CS202002277_10|CS202002277_11|CS202002277_12|CS202002277_13|CS202002277_14|CS202002277_15|CS202002277_16 +Neuronal: Glutamatergic,Neuronal: Glutamatergic,ATACseq 17-24,CS202002277_40,Neuronal: Glutamatergic,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_17|CS202002277_18|CS202002277_19|CS202002277_20|CS202002277_21|CS202002277_22|CS202002277_23|CS202002277_24 +Non-neural,Non-neural,ATACseq 28-31,CS202002277_41,Non-neural,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_28|CS202002277_29|CS202002277_30|CS202002277_31 +CGE/PoA,CGE/PoA,ATACseq 01-09,CS202002277_42,CGE/PoA,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_1|CS202002277_2|CS202002277_3|CS202002277_4|CS202002277_5|CS202002277_6|CS202002277_7|CS202002277_8|CS202002277_9 +MGE,MGE,ATACseq 10-16,CS202002277_43,MGE,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_10|CS202002277_11|CS202002277_12|CS202002277_13|CS202002277_14|CS202002277_15|CS202002277_16 +IT projecting,IT projecting,ATACseq 17-21,CS202002277_44,IT projecting,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_17|CS202002277_18|CS202002277_19|CS202002277_20|CS202002277_21 +Non-IT projecting,Non-IT projecting,ATACseq 22-24,CS202002277_45,Non-IT projecting,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_22|CS202002277_23|CS202002277_24 +,All cells,ATACseq 01-31,CS202002277_46,,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_1|CS202002277_2|CS202002277_3|CS202002277_4|CS202002277_5|CS202002277_6|CS202002277_7|CS202002277_8|CS202002277_9|CS202002277_10|CS202002277_11|CS202002277_12|CS202002277_13|CS202002277_14|CS202002277_15|CS202002277_16|CS202002277_17|CS202002277_18|CS202002277_19|CS202002277_20|CS202002277_21|CS202002277_22|CS202002277_23|CS202002277_24|CS202002277_25|CS202002277_26|CS202002277_27|CS202002277_28|CS202002277_29|CS202002277_30|CS202002277_31 \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202103210.csv b/src/dendrograms/nomenclature_table_CCN202103210.csv index b1981da5..cac85887 100644 --- a/src/dendrograms/nomenclature_table_CCN202103210.csv +++ b/src/dendrograms/nomenclature_table_CCN202103210.csv @@ -94,33 +94,34 @@ Peri,Peri,MERFISH 92,CS202103210_92,Pericyte,,Meng Zhang,10.1101/2020.06.04.1057 Micro_1,Micro_1,MERFISH 93,CS202103210_93,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, Micro_2,Micro_2,MERFISH 94,CS202103210_94,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, PVM,PVM,MERFISH 95,CS202103210_95,PVM,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Lamp5,Lamp5,MERFISH 01-08,CS202103210_96,Lamp5,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Sncg,Sncg,MERFISH 10-11,CS202103210_97,Sncg,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Vip,Vip,"MERFISH 09, 12-21",CS202103210_98,Vip,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Sst,Sst,MERFISH 22-30,CS202103210_99,Sst,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Pvalb,Pvalb,MERFISH 31-42,CS202103210_100,Pvalb,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Chandelier,Chandelier,MERFISH 41-42,CS202103210_101,Chandelier,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L2/3 IT,L2/3 IT,MERFISH 43-47,CS202103210_102,L2/3 IT,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L4/5 IT (MOp),L4/5 IT (MOp),"MERFISH 48-49, 52-54",CS202103210_103,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L4/5 IT (SSp),L4/5 IT (SSp),MERFISH 50-51,CS202103210_104,,,Meng Zhang,10.1101/2020.06.04.105700,neocortex,UBERON_0001950,CCN202103210,Mouse,MERFISH, -L5 IT,L5 IT,MERFISH 55-58,CS202103210_105,L5 IT,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L6 IT,L6 IT,MERFISH 59-61,CS202103210_106,L6 IT,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L5 PT,L5 PT,MERFISH 63-67,CS202103210_107,L5 ET,L5 PT|L5 CF,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L5 PT (Non-MY-projecting),L5 PT (Non-MY-projecting),MERFISH 64-67,CS202103210_108,,L5 ET (Non-MY-projecting),Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L6 CT,L6 CT,MERFISH 68-76,CS202103210_109,L6 CT,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L6b,L6b,MERFISH 77-79,CS202103210_110,L6b,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L5/6 NP,L5/6 NP,MERFISH 80-81,CS202103210_111,L5/6 NP,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Astrocyte,Astrocyte,MERFISH 82-84,CS202103210_112,Astrocyte,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Oligodendrocyte,Oligodendrocyte,MERFISH 86-88,CS202103210_113,Oligodendrocyte,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Microglia,Microglia,MERFISH 93-94,CS202103210_114,Microglia,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Microglia-PVM,Microglia-PVM,MERFISH 93-95,CS202103210_115,Microglia-PVM,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -CGE/PoA,CGE/PoA,MERFISH 01-21,CS202103210_116,CGE/PoA,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -MGE,MGE,MERFISH 22-42,CS202103210_117,MGE,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -GABAergic,GABAergic,MERFISH 01-42,CS202103210_118,Neuronal: GABAergic,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -IT projecting,IT projecting,MERFISH 43-61,CS202103210_119,IT projecting,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Non-IT projecting,Non-IT projecting,MERFISH 62-81,CS202103210_120,Non-IT projecting,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Glutamatergic,Glutamatergic,MERFISH 43-81,CS202103210_121,Neuronal: Glutamatergic,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Non-Neuronal,Non-Neuronal,MERFISH 82-88,CS202103210_122,Non-neuronal,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Non-Neural,Non-Neural,MERFISH 89-95,CS202103210_123,Non-neural,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Oligodendrocyte-OPC,Oligodendrocyte-OPC,MERFISH 86-88,CS202103210_124,Oligodendrocyte-OPC,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L4/5 IT,L4/5 IT,"MERFISH 48-49, 52-54",CS202103210_125,L4/5 IT,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, \ No newline at end of file +Lamp5,Lamp5,MERFISH 01-08,CS202103210_96,Lamp5,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_1|CS202103210_2|CS202103210_3|CS202103210_4|CS202103210_5|CS202103210_6|CS202103210_7|CS202103210_8 +Sncg,Sncg,MERFISH 10-11,CS202103210_97,Sncg,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_10|CS202103210_11 +Vip,Vip,"MERFISH 09, 12-21",CS202103210_98,Vip,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_9|CS202103210_12|CS202103210_13|CS202103210_14|CS202103210_15|CS202103210_16|CS202103210_17|CS202103210_18|CS202103210_19|CS202103210_20|CS202103210_21 +Sst,Sst,MERFISH 22-30,CS202103210_99,Sst,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_22|CS202103210_23|CS202103210_24|CS202103210_25|CS202103210_26|CS202103210_27|CS202103210_28|CS202103210_29|CS202103210_30 +Pvalb,Pvalb,MERFISH 31-42,CS202103210_100,Pvalb,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_31|CS202103210_32|CS202103210_33|CS202103210_34|CS202103210_35|CS202103210_36|CS202103210_37|CS202103210_38|CS202103210_39|CS202103210_40|CS202103210_41|CS202103210_42 +Chandelier,Chandelier,MERFISH 41-42,CS202103210_101,Chandelier,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_41|CS202103210_42 +L2/3 IT,L2/3 IT,MERFISH 43-47,CS202103210_102,L2/3 IT,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_43|CS202103210_44|CS202103210_45|CS202103210_46|CS202103210_47 +L4/5 IT (MOp),L4/5 IT (MOp),"MERFISH 48-49, 52-54",CS202103210_103,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_48|CS202103210_49|CS202103210_52|CS202103210_53|CS202103210_54 +L4/5 IT (SSp),L4/5 IT (SSp),MERFISH 50-51,CS202103210_104,,,Meng Zhang,10.1101/2020.06.04.105700,neocortex,UBERON_0001950,CCN202103210,Mouse,MERFISH,CS202103210_50|CS202103210_51 +L5 IT,L5 IT,MERFISH 55-58,CS202103210_105,L5 IT,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_55|CS202103210_56|CS202103210_57|CS202103210_58 +L6 IT,L6 IT,MERFISH 59-61,CS202103210_106,L6 IT,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_59|CS202103210_60|CS202103210_61 +L5 PT,L5 PT,MERFISH 63-67,CS202103210_107,L5 ET,L5 PT|L5 CF,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_63|CS202103210_64|CS202103210_65|CS202103210_66|CS202103210_67 +L5 PT (Non-MY-projecting),L5 PT (Non-MY-projecting),MERFISH 64-67,CS202103210_108,,L5 ET (Non-MY-projecting),Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_64|CS202103210_65|CS202103210_66|CS202103210_67 +L6 CT,L6 CT,MERFISH 68-76,CS202103210_109,L6 CT,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_68|CS202103210_69|CS202103210_70|CS202103210_71|CS202103210_72|CS202103210_73|CS202103210_74|CS202103210_75|CS202103210_76 +L6b,L6b,MERFISH 77-79,CS202103210_110,L6b,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_77|CS202103210_78|CS202103210_79 +L5/6 NP,L5/6 NP,MERFISH 80-81,CS202103210_111,L5/6 NP,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_80|CS202103210_81 +Astrocyte,Astrocyte,MERFISH 82-84,CS202103210_112,Astrocyte,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_82|CS202103210_83|CS202103210_84 +Oligodendrocyte,Oligodendrocyte,MERFISH 86-88,CS202103210_113,Oligodendrocyte,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_86|CS202103210_87|CS202103210_88 +Microglia,Microglia,MERFISH 93-94,CS202103210_114,Microglia,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_93|CS202103210_94 +Microglia-PVM,Microglia-PVM,MERFISH 93-95,CS202103210_115,Microglia-PVM,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_93|CS202103210_94|CS202103210_95 +CGE/PoA,CGE/PoA,MERFISH 01-21,CS202103210_116,CGE/PoA,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_1|CS202103210_2|CS202103210_3|CS202103210_4|CS202103210_5|CS202103210_6|CS202103210_7|CS202103210_8|CS202103210_9|CS202103210_10|CS202103210_11|CS202103210_12|CS202103210_13|CS202103210_14|CS202103210_15|CS202103210_16|CS202103210_17|CS202103210_18|CS202103210_19|CS202103210_20|CS202103210_21 +MGE,MGE,MERFISH 22-42,CS202103210_117,MGE,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_22|CS202103210_23|CS202103210_24|CS202103210_25|CS202103210_26|CS202103210_27|CS202103210_28|CS202103210_29|CS202103210_30|CS202103210_31|CS202103210_32|CS202103210_33|CS202103210_34|CS202103210_35|CS202103210_36|CS202103210_37|CS202103210_38|CS202103210_39|CS202103210_40|CS202103210_41|CS202103210_42 +GABAergic,GABAergic,MERFISH 01-42,CS202103210_118,Neuronal: GABAergic,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_1|CS202103210_2|CS202103210_3|CS202103210_4|CS202103210_5|CS202103210_6|CS202103210_7|CS202103210_8|CS202103210_9|CS202103210_10|CS202103210_11|CS202103210_12|CS202103210_13|CS202103210_14|CS202103210_15|CS202103210_16|CS202103210_17|CS202103210_18|CS202103210_19|CS202103210_20|CS202103210_21|CS202103210_22|CS202103210_23|CS202103210_24|CS202103210_25|CS202103210_26|CS202103210_27|CS202103210_28|CS202103210_29|CS202103210_30|CS202103210_31|CS202103210_32|CS202103210_33|CS202103210_34|CS202103210_35|CS202103210_36|CS202103210_37|CS202103210_38|CS202103210_39|CS202103210_40|CS202103210_41|CS202103210_42 +IT projecting,IT projecting,MERFISH 43-61,CS202103210_119,IT projecting,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_43|CS202103210_44|CS202103210_45|CS202103210_46|CS202103210_47|CS202103210_48|CS202103210_49|CS202103210_50|CS202103210_51|CS202103210_52|CS202103210_53|CS202103210_54|CS202103210_55|CS202103210_56|CS202103210_57|CS202103210_58|CS202103210_59|CS202103210_60|CS202103210_61 +Non-IT projecting,Non-IT projecting,MERFISH 62-81,CS202103210_120,Non-IT projecting,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_62|CS202103210_63|CS202103210_64|CS202103210_65|CS202103210_66|CS202103210_67|CS202103210_68|CS202103210_69|CS202103210_70|CS202103210_71|CS202103210_72|CS202103210_73|CS202103210_74|CS202103210_75|CS202103210_76|CS202103210_77|CS202103210_78|CS202103210_79|CS202103210_80|CS202103210_81 +Glutamatergic,Glutamatergic,MERFISH 43-81,CS202103210_121,Neuronal: Glutamatergic,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_43|CS202103210_44|CS202103210_45|CS202103210_46|CS202103210_47|CS202103210_48|CS202103210_49|CS202103210_50|CS202103210_51|CS202103210_52|CS202103210_53|CS202103210_54|CS202103210_55|CS202103210_56|CS202103210_57|CS202103210_58|CS202103210_59|CS202103210_60|CS202103210_61|CS202103210_62|CS202103210_63|CS202103210_64|CS202103210_65|CS202103210_66|CS202103210_67|CS202103210_68|CS202103210_69|CS202103210_70|CS202103210_71|CS202103210_72|CS202103210_73|CS202103210_74|CS202103210_75|CS202103210_76|CS202103210_77|CS202103210_78|CS202103210_79|CS202103210_80|CS202103210_81 +Non-Neuronal,Non-Neuronal,MERFISH 82-88,CS202103210_122,Non-neuronal,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_82|CS202103210_83|CS202103210_84|CS202103210_85|CS202103210_86|CS202103210_87|CS202103210_88 +Non-Neural,Non-Neural,MERFISH 89-95,CS202103210_123,Non-neural,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_89|CS202103210_90|CS202103210_91|CS202103210_92|CS202103210_93|CS202103210_94|CS202103210_95 +Oligodendrocyte-OPC,Oligodendrocyte-OPC,MERFISH 86-88,CS202103210_124,Oligodendrocyte-OPC,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_86|CS202103210_87|CS202103210_88 +L4/5 IT,L4/5 IT,"MERFISH 48-49, 52-54",CS202103210_125,L4/5 IT,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_48|CS202103210_49|CS202103210_52|CS202103210_53|CS202103210_54 +,All cells,MERFISH 01-95,CS202103210_126,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_1|CS202103210_2|CS202103210_3|CS202103210_4|CS202103210_5|CS202103210_6|CS202103210_7|CS202103210_8|CS202103210_9|CS202103210_10|CS202103210_11|CS202103210_12|CS202103210_13|CS202103210_14|CS202103210_15|CS202103210_16|CS202103210_17|CS202103210_18|CS202103210_19|CS202103210_20|CS202103210_21|CS202103210_22|CS202103210_23|CS202103210_24|CS202103210_25|CS202103210_26|CS202103210_27|CS202103210_28|CS202103210_29|CS202103210_30|CS202103210_31|CS202103210_32|CS202103210_33|CS202103210_34|CS202103210_35|CS202103210_36|CS202103210_37|CS202103210_38|CS202103210_39|CS202103210_40|CS202103210_41|CS202103210_42|CS202103210_43|CS202103210_44|CS202103210_45|CS202103210_46|CS202103210_47|CS202103210_48|CS202103210_49|CS202103210_50|CS202103210_51|CS202103210_52|CS202103210_53|CS202103210_54|CS202103210_55|CS202103210_56|CS202103210_57|CS202103210_58|CS202103210_59|CS202103210_60|CS202103210_61|CS202103210_62|CS202103210_63|CS202103210_64|CS202103210_65|CS202103210_66|CS202103210_67|CS202103210_68|CS202103210_69|CS202103210_70|CS202103210_71|CS202103210_72|CS202103210_73|CS202103210_74|CS202103210_75|CS202103210_76|CS202103210_77|CS202103210_78|CS202103210_79|CS202103210_80|CS202103210_81|CS202103210_82|CS202103210_83|CS202103210_84|CS202103210_85|CS202103210_86|CS202103210_87|CS202103210_88|CS202103210_89|CS202103210_90|CS202103210_91|CS202103210_92|CS202103210_93|CS202103210_94|CS202103210_95 \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202103220.csv b/src/dendrograms/nomenclature_table_CCN202103220.csv index 6dbf5d4f..11f827d6 100644 --- a/src/dendrograms/nomenclature_table_CCN202103220.csv +++ b/src/dendrograms/nomenclature_table_CCN202103220.csv @@ -16,7 +16,8 @@ L5 ET (Cluster 3),L5 ET (Cluster 3),EpiRetroSeq 14,CS202103220_14,,RNAseq 070 in L5 ET (Cluster 5),L5 ET (Cluster 5),EpiRetroSeq 15,CS202103220_15,,RNAseq 071 in CCN202002013,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, L5 ET (Cluster 4),L5 ET (Cluster 4),EpiRetroSeq 16,CS202103220_16,,RNAseq 070-072 in CCN202002013,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, L5 ET (Cluster 1),L5 ET (Cluster 1),EpiRetroSeq 17,CS202103220_17,,RNAseq 072-073 in CCN202002013,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, -IT projecting,IT projecting,"EpiRetroSeq 01-04, 09",CS202103220_18,IT projecting,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, -Non-IT projecting,Non-IT projecting,"EpiRetroSeq 05-08, 12-17",CS202103220_19,Non-IT projecting,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, -Glutamatergic,Glutamatergic,"EpiRetroSeq 01-09, 12-17",CS202103220_20,Neuronal: Glutamatergic,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, -L5 ET (Non-MY-projecting),L5 ET (Non-MY-projecting),EpiRetroSeq 13-17,CS202103220_21,,L5 ET (Non-MY-projecting),Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, \ No newline at end of file +IT projecting,IT projecting,"EpiRetroSeq 01-04, 09",CS202103220_18,IT projecting,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq,CS202103220_01|CS202103220_02|CS202103220_03|CS202103220_04|CS202103220_09 +Non-IT projecting,Non-IT projecting,"EpiRetroSeq 05-08, 12-17",CS202103220_19,Non-IT projecting,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq,CS202103220_05|CS202103220_06|CS202103220_07|CS202103220_08|CS202103220_12|CS202103220_13|CS202103220_14|CS202103220_15|CS202103220_16|CS202103220_17 +Glutamatergic,Glutamatergic,"EpiRetroSeq 01-09, 12-17",CS202103220_20,Neuronal: Glutamatergic,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq,CS202103220_01|CS202103220_02|CS202103220_03|CS202103220_04|CS202103220_05|CS202103220_06|CS202103220_07|CS202103220_08|CS202103220_09|CS202103220_12|CS202103220_13|CS202103220_14|CS202103220_15|CS202103220_16|CS202103220_17 +L5 ET (Non-MY-projecting),L5 ET (Non-MY-projecting),EpiRetroSeq 13-17,CS202103220_21,,L5 ET (Non-MY-projecting),Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq,CS202103220_13|CS202103220_14|CS202103220_15|CS202103220_16|CS202103220_17 +,All cells,EpiRetroSeq 01-17,CS202103220_22,,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq,CS202103220_01|CS202103220_02|CS202103220_03|CS202103220_04|CS202103220_05|CS202103220_06|CS202103220_07|CS202103220_08|CS202103220_09|CS202103220_10|CS202103220_11|CS202103220_12|CS202103220_13|CS202103220_14|CS202103220_15|CS202103220_16|CS202103220_17 \ No newline at end of file From ad21e5e151602377e2a7f0ef429ec9f7ea1bc373 Mon Sep 17 00:00:00 2001 From: Shawn Tan <76212760+shawntanzk@users.noreply.github.com> Date: Tue, 27 Jul 2021 07:52:16 +0100 Subject: [PATCH 06/17] Update CCN202002013.json 26 July update to Mouse json file --- src/dendrograms/CCN202002013.json | 709 ++++++++++++++++++++---------- 1 file changed, 470 insertions(+), 239 deletions(-) diff --git a/src/dendrograms/CCN202002013.json b/src/dendrograms/CCN202002013.json index 5f46a198..8945df1f 100644 --- a/src/dendrograms/CCN202002013.json +++ b/src/dendrograms/CCN202002013.json @@ -10,10 +10,10 @@ "edgePar.conf": 1, "cell_set_preferred_alias": "", "original_label": "n1", - "cell_set_label": "All cells", + "cell_set_label": "RNAseq 001-116", "cell_set_accession": "CS202002013_117", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -21,6 +21,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_1|CS202002013_2|CS202002013_3|CS202002013_4|CS202002013_5|CS202002013_6|CS202002013_7|CS202002013_8|CS202002013_9|CS202002013_10|CS202002013_11|CS202002013_12|CS202002013_13|CS202002013_14|CS202002013_15|CS202002013_16|CS202002013_17|CS202002013_18|CS202002013_19|CS202002013_20|CS202002013_21|CS202002013_22|CS202002013_23|CS202002013_24|CS202002013_25|CS202002013_26|CS202002013_27|CS202002013_28|CS202002013_29|CS202002013_30|CS202002013_31|CS202002013_32|CS202002013_33|CS202002013_34|CS202002013_35|CS202002013_36|CS202002013_37|CS202002013_38|CS202002013_39|CS202002013_40|CS202002013_41|CS202002013_42|CS202002013_43|CS202002013_44|CS202002013_45|CS202002013_46|CS202002013_47|CS202002013_48|CS202002013_49|CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53|CS202002013_54|CS202002013_55|CS202002013_56|CS202002013_57|CS202002013_58|CS202002013_59|CS202002013_60|CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66|CS202002013_67|CS202002013_68|CS202002013_69|CS202002013_70|CS202002013_71|CS202002013_72|CS202002013_73|CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80|CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85|CS202002013_86|CS202002013_87|CS202002013_88|CS202002013_89|CS202002013_90|CS202002013_91|CS202002013_92|CS202002013_93|CS202002013_94|CS202002013_95|CS202002013_96|CS202002013_97|CS202002013_98|CS202002013_99|CS202002013_100|CS202002013_101|CS202002013_102|CS202002013_103|CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_108|CS202002013_109|CS202002013_110|CS202002013_111|CS202002013_112|CS202002013_113|CS202002013_114|CS202002013_115|CS202002013_116", "_row": "n1" } ], @@ -40,7 +41,7 @@ "cell_set_label": "RNAseq 001-102", "cell_set_accession": "CS202002013_118", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -48,6 +49,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_1|CS202002013_2|CS202002013_3|CS202002013_4|CS202002013_5|CS202002013_6|CS202002013_7|CS202002013_8|CS202002013_9|CS202002013_10|CS202002013_11|CS202002013_12|CS202002013_13|CS202002013_14|CS202002013_15|CS202002013_16|CS202002013_17|CS202002013_18|CS202002013_19|CS202002013_20|CS202002013_21|CS202002013_22|CS202002013_23|CS202002013_24|CS202002013_25|CS202002013_26|CS202002013_27|CS202002013_28|CS202002013_29|CS202002013_30|CS202002013_31|CS202002013_32|CS202002013_33|CS202002013_34|CS202002013_35|CS202002013_36|CS202002013_37|CS202002013_38|CS202002013_39|CS202002013_40|CS202002013_41|CS202002013_42|CS202002013_43|CS202002013_44|CS202002013_45|CS202002013_46|CS202002013_47|CS202002013_48|CS202002013_49|CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53|CS202002013_54|CS202002013_55|CS202002013_56|CS202002013_57|CS202002013_58|CS202002013_59|CS202002013_60|CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66|CS202002013_67|CS202002013_68|CS202002013_69|CS202002013_70|CS202002013_71|CS202002013_72|CS202002013_73|CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80|CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85|CS202002013_86|CS202002013_87|CS202002013_88|CS202002013_89|CS202002013_90|CS202002013_91|CS202002013_92|CS202002013_93|CS202002013_94|CS202002013_95|CS202002013_96|CS202002013_97|CS202002013_98|CS202002013_99|CS202002013_100|CS202002013_101|CS202002013_102", "_row": "n2" } ], @@ -67,7 +69,7 @@ "cell_set_label": "RNAseq 001-094", "cell_set_accession": "CS202002013_119", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -75,6 +77,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": 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"cell_set_structure": "primary motor cortex", @@ -665,6 +687,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Lamp5 Lhx6" } ] @@ -688,7 +711,7 @@ "cell_set_label": "RNAseq 009-027", "cell_set_accession": "CS202002013_132", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -696,6 +719,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_9|CS202002013_10|CS202002013_11|CS202002013_12|CS202002013_13|CS202002013_14|CS202002013_15|CS202002013_16|CS202002013_17|CS202002013_18|CS202002013_19|CS202002013_20|CS202002013_21|CS202002013_22|CS202002013_23|CS202002013_24|CS202002013_25|CS202002013_26|CS202002013_27", "_row": "n16" } ], @@ -715,7 +739,7 @@ "cell_set_label": "RNAseq 009-014", "cell_set_accession": "CS202002013_133", "cell_set_aligned_alias": "Sncg", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -723,6 +747,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_9|CS202002013_10|CS202002013_11|CS202002013_12|CS202002013_13|CS202002013_14", "_row": "n17" } ], @@ -742,7 +767,7 @@ "cell_set_label": "RNAseq 009-010", "cell_set_accession": "CS202002013_134", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "Sncg_2", + "cell_set_additional_alias": "Sncg_2", "cell_set_alias_assignee": "Zizhen Yao|Nikolas Jorstad", "cell_set_alias_citation": "10.1101/2020.02.29.970558|10.1101/2020.03.31.016972", "cell_set_structure": "primary motor cortex", @@ -750,6 +775,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_9|CS202002013_10", "_row": "n18" } ], @@ -774,7 +800,7 @@ "cell_set_label": "RNAseq 009", "cell_set_accession": "CS202002013_9", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -782,6 +808,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Sncg Col14a1" } ] @@ -806,7 +833,7 @@ "cell_set_label": "RNAseq 010", "cell_set_accession": "CS202002013_10", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -814,6 +841,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Sncg Slc17a8" } ] @@ -835,7 +863,7 @@ "cell_set_label": "RNAseq 011-014", "cell_set_accession": "CS202002013_135", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -843,6 +871,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_11|CS202002013_12|CS202002013_13|CS202002013_14", "_row": "n19" } ], @@ -862,7 +891,7 @@ "cell_set_label": "RNAseq 011-012", "cell_set_accession": "CS202002013_136", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -870,6 +899,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_11|CS202002013_12", "_row": "n20" } ], @@ -894,7 +924,7 @@ "cell_set_label": "RNAseq 011", "cell_set_accession": "CS202002013_11", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -902,6 +932,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Sncg Calb1_1" } ] @@ -926,7 +957,7 @@ "cell_set_label": "RNAseq 012", "cell_set_accession": "CS202002013_12", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -934,6 +965,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Sncg Calb1_2" } ] @@ -955,7 +987,7 @@ "cell_set_label": "RNAseq 013-014", "cell_set_accession": "CS202002013_137", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -963,6 +995,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_13|CS202002013_14", "_row": "n21" } ], @@ -987,7 +1020,7 @@ "cell_set_label": "RNAseq 013", "cell_set_accession": "CS202002013_13", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -995,6 +1028,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Sncg Npy2r" } ] @@ -1019,7 +1053,7 @@ "cell_set_label": "RNAseq 014", "cell_set_accession": "CS202002013_14", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "Small CCK basket cell", + "cell_set_additional_alias": "Small CCK basket cell", "cell_set_alias_assignee": "Zizhen Yao|Federico Scala", "cell_set_alias_citation": "10.1101/2020.02.29.970558|10.1101/2020.02.03.929158", "cell_set_structure": "primary motor cortex", @@ -1027,6 +1061,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Vip Sncg" } ] @@ -1052,7 +1087,7 @@ "cell_set_label": "RNAseq 015-027", "cell_set_accession": "CS202002013_138", "cell_set_aligned_alias": "Vip", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -1060,6 +1095,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_15|CS202002013_16|CS202002013_17|CS202002013_18|CS202002013_19|CS202002013_20|CS202002013_21|CS202002013_22|CS202002013_23|CS202002013_24|CS202002013_25|CS202002013_26|CS202002013_27", "_row": "n22" } ], @@ -1079,7 +1115,7 @@ "cell_set_label": "RNAseq 015-017", "cell_set_accession": "CS202002013_139", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "L5/6 CCK cell", + "cell_set_additional_alias": "L5/6 CCK cell", "cell_set_alias_assignee": "Zizhen Yao|Federico Scala", "cell_set_alias_citation": "10.1101/2020.02.29.970558|10.1101/2020.02.03.929158", "cell_set_structure": "primary motor cortex", @@ -1087,6 +1123,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_15|CS202002013_16|CS202002013_17", "_row": "n23" } ], @@ -1106,7 +1143,7 @@ "cell_set_label": "RNAseq 015-016", "cell_set_accession": "CS202002013_140", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -1114,6 +1151,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_15|CS202002013_16", "_row": "n24" } ], @@ -1138,7 +1176,7 @@ "cell_set_label": "RNAseq 015", "cell_set_accession": "CS202002013_15", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -1146,6 +1184,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Vip Serpinf1_1" } ] @@ -1170,7 +1209,7 @@ "cell_set_label": "RNAseq 016", "cell_set_accession": "CS202002013_16", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -1178,6 +1217,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Vip Serpinf1_2" } ] @@ -1204,7 +1244,7 @@ "cell_set_label": "RNAseq 017", "cell_set_accession": "CS202002013_17", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -1212,6 +1252,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Vip Serpinf1_3" } ] @@ -1233,7 +1274,7 @@ "cell_set_label": "RNAseq 018-027", "cell_set_accession": "CS202002013_141", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -1241,6 +1282,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_18|CS202002013_19|CS202002013_20|CS202002013_21|CS202002013_22|CS202002013_23|CS202002013_24|CS202002013_25|CS202002013_26|CS202002013_27", "_row": "n25" } ], @@ -1260,7 +1302,7 @@ "cell_set_label": "RNAseq 018-025", "cell_set_accession": "CS202002013_142", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -1268,6 +1310,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_18|CS202002013_19|CS202002013_20|CS202002013_21|CS202002013_22|CS202002013_23|CS202002013_24|CS202002013_25", "_row": "n26" } ], @@ -1287,7 +1330,7 @@ "cell_set_label": "RNAseq 018-020", "cell_set_accession": "CS202002013_143", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "L5 VIP cell", + "cell_set_additional_alias": "L5 VIP cell", "cell_set_alias_assignee": "Zizhen Yao|Federico Scala", "cell_set_alias_citation": "10.1101/2020.02.29.970558|10.1101/2020.02.03.929158", "cell_set_structure": "primary motor cortex", @@ -1295,6 +1338,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_18|CS202002013_19|CS202002013_20", "_row": "n27" } ], @@ -1319,7 +1363,7 @@ "cell_set_label": "RNAseq 018", "cell_set_accession": "CS202002013_18", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -1327,6 +1371,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Vip Htr1f" } ] @@ -1346,7 +1391,7 @@ "cell_set_label": "RNAseq 019-020", "cell_set_accession": "CS202002013_144", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -1354,6 +1399,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_19|CS202002013_20", "_row": "n28" } ], @@ -1378,7 +1424,7 @@ "cell_set_label": "RNAseq 019", "cell_set_accession": "CS202002013_19", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -1386,6 +1432,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Vip Gpc3" } ] @@ -1410,7 +1457,7 @@ "cell_set_label": "RNAseq 020", "cell_set_accession": "CS202002013_20", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -1418,6 +1465,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Vip C1ql1" } ] @@ -1432,16 +1480,16 @@ "members": 5, "midpoint": 1.25, "height": 0.0548, - "label": "", + "label": "L2/3 Bipolar VIP cell", "edgePar.col": "#0C0000", "edgePar.lwd": 1.9545, "edgePar.conf": 0.9696, - "cell_set_preferred_alias": "", + "cell_set_preferred_alias": "L2/3 Bipolar VIP cell", "original_label": "n29", "cell_set_label": "RNAseq 021-025", "cell_set_accession": "CS202002013_145", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "L2/3 Bipolar VIP cell", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -1449,6 +1497,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_21|CS202002013_22|CS202002013_23|CS202002013_24|CS202002013_25", "_row": "n29" } ], @@ -1473,7 +1522,7 @@ "cell_set_label": "RNAseq 021", "cell_set_accession": "CS202002013_21", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -1481,6 +1530,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Vip Mybpc1_2" } ] @@ -1500,7 +1550,7 @@ "cell_set_label": "RNAseq 022-025", "cell_set_accession": "CS202002013_146", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -1508,6 +1558,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_22|CS202002013_23|CS202002013_24|CS202002013_25", "_row": "n30" } ], @@ -1527,7 +1578,7 @@ "cell_set_label": "RNAseq 022-023", "cell_set_accession": "CS202002013_147", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -1535,6 +1586,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_22|CS202002013_23", "_row": "n31" } ], @@ -1559,7 +1611,7 @@ "cell_set_label": "RNAseq 022", "cell_set_accession": "CS202002013_22", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -1567,6 +1619,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Vip Mybpc1_1" } ] @@ -1591,7 +1644,7 @@ "cell_set_label": "RNAseq 023", "cell_set_accession": "CS202002013_23", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -1599,6 +1652,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Vip Chat_1" } ] @@ -1620,7 +1674,7 @@ "cell_set_label": "RNAseq 024-025", "cell_set_accession": "CS202002013_148", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -1628,6 +1682,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_24|CS202002013_25", "_row": "n32" } ], @@ -1652,7 +1707,7 @@ "cell_set_label": "RNAseq 024", "cell_set_accession": "CS202002013_24", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -1660,6 +1715,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Vip Mybpc1_3" } ] @@ -1684,7 +1740,7 @@ "cell_set_label": "RNAseq 025", "cell_set_accession": "CS202002013_25", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -1692,6 +1748,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Vip Chat_2" } ] @@ -1719,7 +1776,7 @@ "cell_set_label": "RNAseq 026-027", "cell_set_accession": "CS202002013_149", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "Vip_4|??? VIP cell", + "cell_set_additional_alias": "Vip_4|??? VIP cell", "cell_set_alias_assignee": "Zizhen Yao|Nikolas Jorstad|Federico Scala", "cell_set_alias_citation": "10.1101/2020.02.29.970558|10.1101/2020.03.31.016972|10.1101/2020.02.03.929158", "cell_set_structure": "primary motor cortex", @@ -1727,6 +1784,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_26|CS202002013_27", "_row": "n33" } ], @@ -1751,7 +1809,7 @@ "cell_set_label": "RNAseq 026", "cell_set_accession": "CS202002013_26", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -1759,6 +1817,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Vip Igfbp6_1" } ] @@ -1783,7 +1842,7 @@ "cell_set_label": "RNAseq 027", "cell_set_accession": "CS202002013_27", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -1791,6 +1850,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Vip Igfbp6_2" } ] @@ -1820,7 +1880,7 @@ "cell_set_label": "RNAseq 028-057", "cell_set_accession": "CS202002013_150", "cell_set_aligned_alias": "MGE", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -1828,6 +1888,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_28|CS202002013_29|CS202002013_30|CS202002013_31|CS202002013_32|CS202002013_33|CS202002013_34|CS202002013_35|CS202002013_36|CS202002013_37|CS202002013_38|CS202002013_39|CS202002013_40|CS202002013_41|CS202002013_42|CS202002013_43|CS202002013_44|CS202002013_45|CS202002013_46|CS202002013_47|CS202002013_48|CS202002013_49|CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53|CS202002013_54|CS202002013_55|CS202002013_56|CS202002013_57", "_row": "n34" } ], @@ -1852,7 +1913,7 @@ "cell_set_label": "RNAseq 028", "cell_set_accession": "CS202002013_28", "cell_set_aligned_alias": "Sst Chodl", - "cell_set_additional_aliases": "Sst Chodl|Long-projecting SST cell", + "cell_set_additional_alias": "Sst Chodl|Long-projecting SST cell", "cell_set_alias_assignee": "Zizhen Yao||Nikolas Jorstad|Federico Scala", "cell_set_alias_citation": "10.1101/2020.02.29.970558||10.1101/2020.03.31.016972|10.1101/2020.02.03.929158", "cell_set_structure": "primary motor cortex", @@ -1860,6 +1921,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Sst Chodl" } ] @@ -1879,7 +1941,7 @@ "cell_set_label": "RNAseq 029-057", "cell_set_accession": "CS202002013_151", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -1887,6 +1949,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_29|CS202002013_30|CS202002013_31|CS202002013_32|CS202002013_33|CS202002013_34|CS202002013_35|CS202002013_36|CS202002013_37|CS202002013_38|CS202002013_39|CS202002013_40|CS202002013_41|CS202002013_42|CS202002013_43|CS202002013_44|CS202002013_45|CS202002013_46|CS202002013_47|CS202002013_48|CS202002013_49|CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53|CS202002013_54|CS202002013_55|CS202002013_56|CS202002013_57", "_row": "n35" } ], @@ -1906,7 +1969,7 @@ "cell_set_label": "RNAseq 029-045", "cell_set_accession": "CS202002013_152", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -1914,6 +1977,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_29|CS202002013_30|CS202002013_31|CS202002013_32|CS202002013_33|CS202002013_34|CS202002013_35|CS202002013_36|CS202002013_37|CS202002013_38|CS202002013_39|CS202002013_40|CS202002013_41|CS202002013_42|CS202002013_43|CS202002013_44|CS202002013_45", "_row": "n36" } ], @@ -1933,7 +1997,7 @@ "cell_set_label": "RNAseq 029-041", "cell_set_accession": "CS202002013_153", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -1941,6 +2005,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_29|CS202002013_30|CS202002013_31|CS202002013_32|CS202002013_33|CS202002013_34|CS202002013_35|CS202002013_36|CS202002013_37|CS202002013_38|CS202002013_39|CS202002013_40|CS202002013_41", "_row": "n37" } ], @@ -1960,7 +2025,7 @@ "cell_set_label": "RNAseq 029-033", "cell_set_accession": "CS202002013_154", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -1968,6 +2033,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_29|CS202002013_30|CS202002013_31|CS202002013_32|CS202002013_33", "_row": "n38" } ], @@ -1987,7 +2053,7 @@ "cell_set_label": "RNAseq 029-030", "cell_set_accession": "CS202002013_155", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -1995,6 +2061,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_29|CS202002013_30", "_row": "n39" } ], @@ -2019,7 +2086,7 @@ "cell_set_label": "RNAseq 029", "cell_set_accession": "CS202002013_29", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -2027,6 +2094,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Sst Penk" } ] @@ -2051,7 +2119,7 @@ "cell_set_label": "RNAseq 030", "cell_set_accession": "CS202002013_30", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -2059,6 +2127,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Sst Myh8_1" } ] @@ -2080,7 +2149,7 @@ "cell_set_label": "RNAseq 031-033", "cell_set_accession": "CS202002013_156", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "Sst_1", + "cell_set_additional_alias": "Sst_1", "cell_set_alias_assignee": "Zizhen Yao|Nikolas Jorstad", "cell_set_alias_citation": "10.1101/2020.02.29.970558|10.1101/2020.03.31.016972", "cell_set_structure": "primary motor cortex", @@ -2088,6 +2157,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_31|CS202002013_32|CS202002013_33", "_row": "n40" } ], @@ -2107,7 +2177,7 @@ "cell_set_label": "RNAseq 031-032", "cell_set_accession": "CS202002013_157", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -2115,6 +2185,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_31|CS202002013_32", "_row": "n41" } ], @@ -2139,7 +2210,7 @@ "cell_set_label": "RNAseq 031", "cell_set_accession": "CS202002013_31", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -2147,6 +2218,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Sst Myh8_2" } ] @@ -2171,7 +2243,7 @@ "cell_set_label": "RNAseq 032", "cell_set_accession": "CS202002013_32", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -2179,6 +2251,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Sst Myh8_3" } ] @@ -2205,7 +2278,7 @@ "cell_set_label": "RNAseq 033", "cell_set_accession": "CS202002013_33", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -2213,6 +2286,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Sst Htr1a" } ] @@ -2236,7 +2310,7 @@ "cell_set_label": "RNAseq 034-041", "cell_set_accession": "CS202002013_158", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -2244,6 +2318,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_34|CS202002013_35|CS202002013_36|CS202002013_37|CS202002013_38|CS202002013_39|CS202002013_40|CS202002013_41", "_row": "n42" } ], @@ -2263,7 +2338,7 @@ "cell_set_label": "RNAseq 034-035", "cell_set_accession": "CS202002013_159", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "L5 T Martinotti cell", + "cell_set_additional_alias": "L5 T Martinotti cell", "cell_set_alias_assignee": "Zizhen Yao|Federico Scala", "cell_set_alias_citation": "10.1101/2020.02.29.970558|10.1101/2020.02.03.929158", "cell_set_structure": "primary motor cortex", @@ -2271,6 +2346,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_34|CS202002013_35", "_row": "n43" } ], @@ -2295,7 +2371,7 @@ "cell_set_label": "RNAseq 034", "cell_set_accession": "CS202002013_34", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -2303,6 +2379,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Sst Etv1" } ] @@ -2327,7 +2404,7 @@ "cell_set_label": "RNAseq 035", "cell_set_accession": "CS202002013_35", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -2335,6 +2412,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Sst Pvalb Etv1" } ] @@ -2356,7 +2434,7 @@ "cell_set_label": "RNAseq 036-041", "cell_set_accession": "CS202002013_160", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -2364,6 +2442,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_36|CS202002013_37|CS202002013_38|CS202002013_39|CS202002013_40|CS202002013_41", "_row": "n44" } ], @@ -2383,7 +2462,7 @@ "cell_set_label": "RNAseq 036-037", "cell_set_accession": "CS202002013_161", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "L5 non-Martinotti cell", + "cell_set_additional_alias": "L5 non-Martinotti cell", "cell_set_alias_assignee": "Zizhen Yao|Federico Scala", "cell_set_alias_citation": "10.1101/2020.02.29.970558|10.1101/2020.02.03.929158", "cell_set_structure": "primary motor cortex", @@ -2391,6 +2470,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_36|CS202002013_37", "_row": "n45" } ], @@ -2415,7 +2495,7 @@ "cell_set_label": "RNAseq 036", "cell_set_accession": "CS202002013_36", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -2423,6 +2503,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Sst Crhr2_1" } ] @@ -2447,7 +2528,7 @@ "cell_set_label": "RNAseq 037", "cell_set_accession": "CS202002013_37", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "Sst_4", + "cell_set_additional_alias": "Sst_4", "cell_set_alias_assignee": "Zizhen Yao|Nikolas Jorstad", "cell_set_alias_citation": "10.1101/2020.02.29.970558|10.1101/2020.03.31.016972", "cell_set_structure": "primary motor cortex", @@ -2455,6 +2536,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Sst Crhr2_2" } ] @@ -2476,7 +2558,7 @@ "cell_set_label": "RNAseq 038-041", "cell_set_accession": "CS202002013_162", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -2484,6 +2566,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_38|CS202002013_39|CS202002013_40|CS202002013_41", "_row": "n46" } ], @@ -2503,7 +2586,7 @@ "cell_set_label": "RNAseq 038-040", "cell_set_accession": "CS202002013_163", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -2511,6 +2594,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_38|CS202002013_39|CS202002013_40", "_row": "n47" } ], @@ -2535,7 +2619,7 @@ "cell_set_label": "RNAseq 038", "cell_set_accession": "CS202002013_38", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "L4 SST cell", + "cell_set_additional_alias": "L4 SST cell", "cell_set_alias_assignee": "Zizhen Yao|Federico Scala", "cell_set_alias_citation": "10.1101/2020.02.29.970558|10.1101/2020.02.03.929158", "cell_set_structure": "primary motor cortex", @@ -2543,6 +2627,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Sst Hpse" } ] @@ -2562,7 +2647,7 @@ "cell_set_label": "RNAseq 039-040", "cell_set_accession": "CS202002013_164", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "L2/3/5 fan Martinotti cell", + "cell_set_additional_alias": "L2/3/5 fan Martinotti cell", "cell_set_alias_assignee": "Zizhen Yao|Federico Scala", "cell_set_alias_citation": "10.1101/2020.02.29.970558|10.1101/2020.02.03.929158", "cell_set_structure": "primary motor cortex", @@ -2570,6 +2655,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_39|CS202002013_40", "_row": "n48" } ], @@ -2594,7 +2680,7 @@ "cell_set_label": "RNAseq 039", "cell_set_accession": "CS202002013_39", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -2602,6 +2688,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Sst Calb2" } ] @@ -2626,7 +2713,7 @@ "cell_set_label": "RNAseq 040", "cell_set_accession": "CS202002013_40", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -2634,6 +2721,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Sst Pappa" } ] @@ -2662,7 +2750,7 @@ "cell_set_label": "RNAseq 041", "cell_set_accession": "CS202002013_41", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "L2/3 PV-like cell", + "cell_set_additional_alias": "L2/3 PV-like cell", "cell_set_alias_assignee": "Zizhen Yao|Federico Scala", "cell_set_alias_citation": "10.1101/2020.02.29.970558|10.1101/2020.02.03.929158", "cell_set_structure": "primary motor cortex", @@ -2670,6 +2758,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Sst Pvalb Calb2" } ] @@ -2697,7 +2786,7 @@ "cell_set_label": "RNAseq 042-045", "cell_set_accession": "CS202002013_165", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "L5/6 non-Martinotti cell", + "cell_set_additional_alias": "L5/6 non-Martinotti cell", "cell_set_alias_assignee": "Zizhen Yao|Federico Scala", "cell_set_alias_citation": "10.1101/2020.02.29.970558|10.1101/2020.02.03.929158", "cell_set_structure": "primary motor cortex", @@ -2705,6 +2794,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_42|CS202002013_43|CS202002013_44|CS202002013_45", "_row": "n49" } ], @@ -2724,7 +2814,7 @@ "cell_set_label": "RNAseq 042-043", "cell_set_accession": "CS202002013_166", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -2732,6 +2822,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_42|CS202002013_43", "_row": "n50" } ], @@ -2756,7 +2847,7 @@ "cell_set_label": "RNAseq 042", "cell_set_accession": "CS202002013_42", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "Sst_5", + "cell_set_additional_alias": "Sst_5", "cell_set_alias_assignee": "Zizhen Yao|Nikolas Jorstad", "cell_set_alias_citation": "10.1101/2020.02.29.970558|10.1101/2020.03.31.016972", "cell_set_structure": "primary motor cortex", @@ -2764,6 +2855,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Sst C1ql3_1" } ] @@ -2788,7 +2880,7 @@ "cell_set_label": "RNAseq 043", "cell_set_accession": "CS202002013_43", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -2796,6 +2888,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Sst C1ql3_2" } ] @@ -2817,7 +2910,7 @@ "cell_set_label": "RNAseq 044-045", "cell_set_accession": "CS202002013_167", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -2825,6 +2918,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_44|CS202002013_45", "_row": "n51" } ], @@ -2849,7 +2943,7 @@ "cell_set_label": "RNAseq 044", "cell_set_accession": "CS202002013_44", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -2857,6 +2951,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Sst Tac2" } ] @@ -2881,7 +2976,7 @@ "cell_set_label": "RNAseq 045", "cell_set_accession": "CS202002013_45", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -2889,6 +2984,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Sst Th_1" } ] @@ -2914,7 +3010,7 @@ "cell_set_label": "RNAseq 046-057", "cell_set_accession": "CS202002013_168", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -2922,6 +3018,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_46|CS202002013_47|CS202002013_48|CS202002013_49|CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53|CS202002013_54|CS202002013_55|CS202002013_56|CS202002013_57", "_row": "n52" } ], @@ -2941,7 +3038,7 @@ "cell_set_label": "RNAseq 046-048", "cell_set_accession": "CS202002013_169", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -2949,6 +3046,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_46|CS202002013_47|CS202002013_48", "_row": "n53" } ], @@ -2968,7 +3066,7 @@ "cell_set_label": "RNAseq 046-047", "cell_set_accession": "CS202002013_170", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "L6 Th+ SST/PV cell", + "cell_set_additional_alias": "L6 Th+ SST/PV cell", "cell_set_alias_assignee": "Zizhen Yao|Federico Scala", "cell_set_alias_citation": "10.1101/2020.02.29.970558|10.1101/2020.02.03.929158", "cell_set_structure": "primary motor cortex", @@ -2976,6 +3074,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_46|CS202002013_47", "_row": "n54" } ], @@ -3000,7 +3099,7 @@ "cell_set_label": "RNAseq 046", "cell_set_accession": "CS202002013_46", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -3008,6 +3107,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Sst Th_2" } ] @@ -3032,7 +3132,7 @@ "cell_set_label": "RNAseq 047", "cell_set_accession": "CS202002013_47", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "Sst_7", + "cell_set_additional_alias": "Sst_7", "cell_set_alias_assignee": "Zizhen Yao|Nikolas Jorstad", "cell_set_alias_citation": "10.1101/2020.02.29.970558|10.1101/2020.03.31.016972", "cell_set_structure": "primary motor cortex", @@ -3040,6 +3140,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Sst Th_3" } ] @@ -3066,7 +3167,7 @@ "cell_set_label": "RNAseq 048", "cell_set_accession": "CS202002013_48", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "L6 FS cell w/ large sag", + "cell_set_additional_alias": "L6 FS cell w/ large sag", "cell_set_alias_assignee": "Zizhen Yao|Federico Scala", "cell_set_alias_citation": "10.1101/2020.02.29.970558|10.1101/2020.02.03.929158", "cell_set_structure": "primary motor cortex", @@ -3074,6 +3175,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Pvalb Gabrg1" } ] @@ -3095,7 +3197,7 @@ "cell_set_label": "RNAseq 049-057", "cell_set_accession": "CS202002013_171", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -3103,6 +3205,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_49|CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53|CS202002013_54|CS202002013_55|CS202002013_56|CS202002013_57", "_row": "n55" } ], @@ -3122,7 +3225,7 @@ "cell_set_label": "RNAseq 049-055", "cell_set_accession": "CS202002013_172", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -3130,6 +3233,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_49|CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53|CS202002013_54|CS202002013_55", "_row": "n56" } ], @@ -3154,7 +3258,7 @@ "cell_set_label": "RNAseq 049", "cell_set_accession": "CS202002013_49", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -3162,6 +3266,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Pvalb Egfem1" } ] @@ -3181,7 +3286,7 @@ "cell_set_label": "RNAseq 050-055", "cell_set_accession": "CS202002013_173", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -3189,6 +3294,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53|CS202002013_54|CS202002013_55", "_row": "n57" } ], @@ -3213,7 +3319,7 @@ "cell_set_label": "RNAseq 050", "cell_set_accession": "CS202002013_50", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -3221,6 +3327,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Pvalb Gpr149" } ] @@ -3240,7 +3347,7 @@ "cell_set_label": "RNAseq 051-055", "cell_set_accession": "CS202002013_174", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -3248,6 +3355,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_51|CS202002013_52|CS202002013_53|CS202002013_54|CS202002013_55", "_row": "n58" } ], @@ -3267,7 +3375,7 @@ "cell_set_label": "RNAseq 051-053", "cell_set_accession": "CS202002013_175", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -3275,6 +3383,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_51|CS202002013_52|CS202002013_53", "_row": "n59" } ], @@ -3299,7 +3408,7 @@ "cell_set_label": "RNAseq 051", "cell_set_accession": "CS202002013_51", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -3307,6 +3416,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Pvalb Kank4" } ] @@ -3326,7 +3436,7 @@ "cell_set_label": "RNAseq 052-053", "cell_set_accession": "CS202002013_176", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -3334,6 +3444,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_52|CS202002013_53", "_row": "n60" } ], @@ -3358,7 +3469,7 @@ "cell_set_label": "RNAseq 052", "cell_set_accession": "CS202002013_52", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -3366,6 +3477,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Pvalb Calb1_1" } ] @@ -3390,7 +3502,7 @@ "cell_set_label": "RNAseq 053", "cell_set_accession": "CS202002013_53", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -3398,6 +3510,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Pvalb Calb1_2" } ] @@ -3421,7 +3534,7 @@ "cell_set_label": "RNAseq 054-055", "cell_set_accession": "CS202002013_177", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "Upper FS Basket cell", + "cell_set_additional_alias": "Upper FS Basket cell", "cell_set_alias_assignee": "Zizhen Yao|Federico Scala", "cell_set_alias_citation": "10.1101/2020.02.29.970558|10.1101/2020.02.03.929158", "cell_set_structure": "primary motor cortex", @@ -3429,6 +3542,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_54|CS202002013_55", "_row": "n61" } ], @@ -3453,7 +3567,7 @@ "cell_set_label": "RNAseq 054", "cell_set_accession": "CS202002013_54", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -3461,6 +3575,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Pvalb Reln" } ] @@ -3485,7 +3600,7 @@ "cell_set_label": "RNAseq 055", "cell_set_accession": "CS202002013_55", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -3493,6 +3608,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Pvalb Il1rapl2" } ] @@ -3520,7 +3636,7 @@ "cell_set_label": "RNAseq 056-057", "cell_set_accession": "CS202002013_178", "cell_set_aligned_alias": "Chandelier", - "cell_set_additional_aliases": "Chandelier cell", + "cell_set_additional_alias": "Chandelier cell", "cell_set_alias_assignee": "Zizhen Yao||Federico Scala", "cell_set_alias_citation": "10.1101/2020.02.29.970558||10.1101/2020.02.03.929158", "cell_set_structure": "primary motor cortex", @@ -3528,6 +3644,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_56|CS202002013_57", "_row": "n62" } ], @@ -3552,7 +3669,7 @@ "cell_set_label": "RNAseq 056", "cell_set_accession": "CS202002013_56", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -3560,6 +3677,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Pvalb Vipr2_1" } ] @@ -3584,7 +3702,7 @@ "cell_set_label": "RNAseq 057", "cell_set_accession": "CS202002013_57", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -3592,6 +3710,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Pvalb Vipr2_2" } ] @@ -3623,7 +3742,7 @@ "cell_set_label": "RNAseq 058-088", "cell_set_accession": "CS202002013_179", "cell_set_aligned_alias": "Glutamatergic", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -3631,6 +3750,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_58|CS202002013_59|CS202002013_60|CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66|CS202002013_67|CS202002013_68|CS202002013_69|CS202002013_70|CS202002013_71|CS202002013_72|CS202002013_73|CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80|CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85|CS202002013_86|CS202002013_87|CS202002013_88", "_row": "n63" } ], @@ -3650,7 +3770,7 @@ "cell_set_label": "RNAseq 058-085", "cell_set_accession": "CS202002013_180", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -3658,6 +3778,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_58|CS202002013_59|CS202002013_60|CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66|CS202002013_67|CS202002013_68|CS202002013_69|CS202002013_70|CS202002013_71|CS202002013_72|CS202002013_73|CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80|CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85", "_row": "n64" } ], @@ -3677,7 +3798,7 @@ "cell_set_label": "RNAseq 058-073", "cell_set_accession": "CS202002013_181", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -3685,6 +3806,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_58|CS202002013_59|CS202002013_60|CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66|CS202002013_67|CS202002013_68|CS202002013_69|CS202002013_70|CS202002013_71|CS202002013_72|CS202002013_73", "_row": "n65" } ], @@ -3704,7 +3826,7 @@ "cell_set_label": "RNAseq 058-069", "cell_set_accession": "CS202002013_182", "cell_set_aligned_alias": "IT projecting", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -3712,6 +3834,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_58|CS202002013_59|CS202002013_60|CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66|CS202002013_67|CS202002013_68|CS202002013_69", "_row": "n66" } ], @@ -3731,7 +3854,7 @@ "cell_set_label": "RNAseq 058-060", "cell_set_accession": "CS202002013_183", "cell_set_aligned_alias": "L2/3 IT", - "cell_set_additional_aliases": "L2/3 IT", + "cell_set_additional_alias": "L2/3 IT", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -3739,6 +3862,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_58|CS202002013_59|CS202002013_60", "_row": "n67" } ], @@ -3758,7 +3882,7 @@ "cell_set_label": "RNAseq 058-059", "cell_set_accession": "CS202002013_184", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -3766,6 +3890,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_58|CS202002013_59", "_row": "n68" } ], @@ -3790,7 +3915,7 @@ "cell_set_label": "RNAseq 058", "cell_set_accession": "CS202002013_58", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -3798,6 +3923,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "L2/3 IT_1" } ] @@ -3822,7 +3948,7 @@ "cell_set_label": "RNAseq 059", "cell_set_accession": "CS202002013_59", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -3830,6 +3956,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "L2/3 IT_2" } ] @@ -3856,7 +3983,7 @@ "cell_set_label": "RNAseq 060", "cell_set_accession": "CS202002013_60", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -3864,6 +3991,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "L2/3 IT_3" } ] @@ -3885,7 +4013,7 @@ "cell_set_label": "RNAseq 061-069", "cell_set_accession": "CS202002013_185", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -3893,6 +4021,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66|CS202002013_67|CS202002013_68|CS202002013_69", "_row": "n69" } ], @@ -3912,7 +4041,7 @@ "cell_set_label": "RNAseq 061-068", "cell_set_accession": "CS202002013_186", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -3920,6 +4049,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66|CS202002013_67|CS202002013_68", "_row": "n70" } ], @@ -3939,7 +4069,7 @@ "cell_set_label": "RNAseq 061-066", "cell_set_accession": "CS202002013_187", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -3947,6 +4077,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66", "_row": "n71" } ], @@ -3966,7 +4097,7 @@ "cell_set_label": "RNAseq 061-062", "cell_set_accession": "CS202002013_188", "cell_set_aligned_alias": "L4", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -3974,6 +4105,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_61|CS202002013_62", "_row": "n72" } ], @@ -3998,7 +4130,7 @@ "cell_set_label": "RNAseq 061", "cell_set_accession": "CS202002013_61", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "L4 IT", + "cell_set_additional_alias": "L4 IT", "cell_set_alias_assignee": "Zizhen Yao|Nikolas Jorstad", "cell_set_alias_citation": "10.1101/2020.02.29.970558|10.1101/2020.03.31.016972", "cell_set_structure": "primary motor cortex", @@ -4006,6 +4138,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "L4/5 IT_1" } ] @@ -4030,7 +4163,7 @@ "cell_set_label": "RNAseq 062", "cell_set_accession": "CS202002013_62", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "L4/5 IT", + "cell_set_additional_alias": "L4/5 IT", "cell_set_alias_assignee": "Zizhen Yao|Nikolas Jorstad", "cell_set_alias_citation": "10.1101/2020.02.29.970558|10.1101/2020.03.31.016972", "cell_set_structure": "primary motor cortex", @@ -4038,6 +4171,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "L4/5 IT_2" } ] @@ -4059,7 +4193,7 @@ "cell_set_label": "RNAseq 063-066", "cell_set_accession": "CS202002013_189", "cell_set_aligned_alias": "L5 IT", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -4067,6 +4201,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66", "_row": "n73" } ], @@ -4077,16 +4212,16 @@ "members": 2, "midpoint": 0.5, "height": 0.0081, - "label": "L5 IT_2", + "label": "L5 IT_2(i)", "edgePar.col": "#000000", "edgePar.lwd": 2, "edgePar.conf": 1, - "cell_set_preferred_alias": "L5 IT_2", + "cell_set_preferred_alias": "L5 IT_2(i)", "original_label": "n74", "cell_set_label": "RNAseq 063-064", "cell_set_accession": "CS202002013_190", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "L5 IT_2", + "cell_set_additional_alias": "L5 IT_2", "cell_set_alias_assignee": "Zizhen Yao|Nikolas Jorstad", "cell_set_alias_citation": "10.1101/2020.02.29.970558|10.1101/2020.03.31.016972", "cell_set_structure": "primary motor cortex", @@ -4094,6 +4229,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_63|CS202002013_64", "_row": "n74" } ], @@ -4118,7 +4254,7 @@ "cell_set_label": "RNAseq 063", "cell_set_accession": "CS202002013_63", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -4126,6 +4262,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "L5 IT_1" } ] @@ -4150,7 +4287,7 @@ "cell_set_label": "RNAseq 064", "cell_set_accession": "CS202002013_64", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -4158,6 +4295,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "L5 IT_2" } ] @@ -4179,7 +4317,7 @@ "cell_set_label": "RNAseq 065-066", "cell_set_accession": "CS202002013_191", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -4187,6 +4325,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_65|CS202002013_66", "_row": "n75" } ], @@ -4211,7 +4350,7 @@ "cell_set_label": "RNAseq 065", "cell_set_accession": "CS202002013_65", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -4219,6 +4358,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "L5 IT_3" } ] @@ -4243,7 +4383,7 @@ "cell_set_label": "RNAseq 066", "cell_set_accession": "CS202002013_66", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -4251,6 +4391,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "L5 IT_4" } ] @@ -4276,7 +4417,7 @@ "cell_set_label": "RNAseq 067-068", "cell_set_accession": "CS202002013_192", "cell_set_aligned_alias": "L6 IT", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -4284,6 +4425,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_67|CS202002013_68", "_row": "n76" } ], @@ -4308,7 +4450,7 @@ "cell_set_label": "RNAseq 067", "cell_set_accession": "CS202002013_67", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "L6 IT_1", + "cell_set_additional_alias": "L6 IT_1", "cell_set_alias_assignee": "Zizhen Yao|Nikolas Jorstad", "cell_set_alias_citation": "10.1101/2020.02.29.970558|10.1101/2020.03.31.016972", "cell_set_structure": "primary motor cortex", @@ -4316,6 +4458,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "L6 IT_1" } ] @@ -4340,7 +4483,7 @@ "cell_set_label": "RNAseq 068", "cell_set_accession": "CS202002013_68", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -4348,6 +4491,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "L6 IT_2" } ] @@ -4376,7 +4520,7 @@ "cell_set_label": "RNAseq 069", "cell_set_accession": "CS202002013_69", "cell_set_aligned_alias": "L6 IT Car3", - "cell_set_additional_aliases": "L6 IT_3|Claustrum-like IT", + "cell_set_additional_alias": "L6 IT_3|Claustrum-like IT", "cell_set_alias_assignee": "Zizhen Yao||Nikolas Jorstad|Federico Scala", "cell_set_alias_citation": "10.1101/2020.02.29.970558||10.1101/2020.03.31.016972|10.1101/2020.02.03.929158", "cell_set_structure": "primary motor cortex", @@ -4384,6 +4528,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "L6 IT Car3" } ] @@ -4407,7 +4552,7 @@ "cell_set_label": "RNAseq 070-073", "cell_set_accession": "CS202002013_193", "cell_set_aligned_alias": "L5 ET", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -4415,6 +4560,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_70|CS202002013_71|CS202002013_72|CS202002013_73", "_row": "n77" } ], @@ -4439,7 +4585,7 @@ "cell_set_label": "RNAseq 070", "cell_set_accession": "CS202002013_70", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -4447,6 +4593,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "L5 ET_1" } ] @@ -4466,7 +4613,7 @@ "cell_set_label": "RNAseq 071-073", "cell_set_accession": "CS202002013_194", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -4474,6 +4621,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_71|CS202002013_72|CS202002013_73", "_row": "n78" } ], @@ -4493,7 +4641,7 @@ "cell_set_label": "RNAseq 071-072", "cell_set_accession": "CS202002013_195", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -4501,6 +4649,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_71|CS202002013_72", "_row": "n79" } ], @@ -4525,7 +4674,7 @@ "cell_set_label": "RNAseq 071", "cell_set_accession": "CS202002013_71", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "L5 ET_2", + "cell_set_additional_alias": "L5 ET_2", "cell_set_alias_assignee": "Zizhen Yao|Nikolas Jorstad", "cell_set_alias_citation": "10.1101/2020.02.29.970558|10.1101/2020.03.31.016972", "cell_set_structure": "primary motor cortex", @@ -4533,6 +4682,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "L5 ET_2" } ] @@ -4557,7 +4707,7 @@ "cell_set_label": "RNAseq 072", "cell_set_accession": "CS202002013_72", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -4565,6 +4715,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "L5 ET_3" } ] @@ -4591,7 +4742,7 @@ "cell_set_label": "RNAseq 073", "cell_set_accession": "CS202002013_73", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -4599,6 +4750,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "L5 ET_4" } ] @@ -4624,7 +4776,7 @@ "cell_set_label": "RNAseq 074-085", "cell_set_accession": "CS202002013_196", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -4632,6 +4784,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80|CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85", "_row": "n80" } ], @@ -4651,7 +4804,7 @@ "cell_set_label": "RNAseq 074-080", "cell_set_accession": "CS202002013_197", "cell_set_aligned_alias": "L6 CT", - "cell_set_additional_aliases": "Corticothalamic|VAL/VM Projecting", + "cell_set_additional_alias": "Corticothalamic|VAL/VM Projecting", "cell_set_alias_assignee": "Zizhen Yao|||Federico Scala", "cell_set_alias_citation": "10.1101/2020.02.29.970558|||10.1101/2020.02.03.929158", "cell_set_structure": "primary motor cortex", @@ -4659,6 +4812,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80", "_row": "n81" } ], @@ -4683,7 +4837,7 @@ "cell_set_label": "RNAseq 074", "cell_set_accession": "CS202002013_74", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "L5 IT_3", + "cell_set_additional_alias": "L5 IT_3", "cell_set_alias_assignee": "Zizhen Yao|Nikolas Jorstad", "cell_set_alias_citation": "10.1101/2020.02.29.970558|10.1101/2020.03.31.016972", "cell_set_structure": "primary motor cortex", @@ -4691,6 +4845,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "L5/6 NP CT" } ] @@ -4710,7 +4865,7 @@ "cell_set_label": "RNAseq 075-080", "cell_set_accession": "CS202002013_198", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -4718,6 +4873,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80", "_row": "n82" } ], @@ -4737,7 +4893,7 @@ "cell_set_label": "RNAseq 075-078", "cell_set_accession": "CS202002013_199", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -4745,6 +4901,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78", "_row": "n83" } ], @@ -4769,7 +4926,7 @@ "cell_set_label": "RNAseq 075", "cell_set_accession": "CS202002013_75", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -4777,6 +4934,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "L6 CT Gpr139" } ] @@ -4796,7 +4954,7 @@ "cell_set_label": "RNAseq 076-078", "cell_set_accession": "CS202002013_200", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -4804,6 +4962,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_76|CS202002013_77|CS202002013_78", "_row": "n84" } ], @@ -4828,7 +4987,7 @@ "cell_set_label": "RNAseq 076", "cell_set_accession": "CS202002013_76", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "L6 CT_2", + "cell_set_additional_alias": "L6 CT_2", "cell_set_alias_assignee": "Zizhen Yao|Nikolas Jorstad", "cell_set_alias_citation": "10.1101/2020.02.29.970558|10.1101/2020.03.31.016972", "cell_set_structure": "primary motor cortex", @@ -4836,6 +4995,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "L6 CT Cpa6" } ] @@ -4855,7 +5015,7 @@ "cell_set_label": "RNAseq 077-078", "cell_set_accession": "CS202002013_201", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -4863,6 +5023,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_77|CS202002013_78", "_row": "n85" } ], @@ -4887,7 +5048,7 @@ "cell_set_label": "RNAseq 077", "cell_set_accession": "CS202002013_77", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -4895,6 +5056,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "L6 CT Grp" } ] @@ -4919,7 +5081,7 @@ "cell_set_label": "RNAseq 078", "cell_set_accession": "CS202002013_78", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -4927,6 +5089,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "L6 CT Pou3f2" } ] @@ -4952,7 +5115,7 @@ "cell_set_label": "RNAseq 079-080", "cell_set_accession": "CS202002013_202", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -4960,6 +5123,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_79|CS202002013_80", "_row": "n86" } ], @@ -4984,7 +5148,7 @@ "cell_set_label": "RNAseq 079", "cell_set_accession": "CS202002013_79", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -4992,6 +5156,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "L6 CT Kit_1" } ] @@ -5016,7 +5181,7 @@ "cell_set_label": "RNAseq 080", "cell_set_accession": "CS202002013_80", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -5024,6 +5189,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "L6 CT Kit_2" } ] @@ -5049,7 +5215,7 @@ "cell_set_label": "RNAseq 081-085", "cell_set_accession": "CS202002013_203", "cell_set_aligned_alias": "L6b", - "cell_set_additional_aliases": "L6b|L6b subplate", + "cell_set_additional_alias": "L6b|L6b subplate", "cell_set_alias_assignee": "Zizhen Yao||Nikolas Jorstad|Federico Scala", "cell_set_alias_citation": "10.1101/2020.02.29.970558||10.1101/2020.03.31.016972|10.1101/2020.02.03.929158", "cell_set_structure": "primary motor cortex", @@ -5057,6 +5223,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85", "_row": "n87" } ], @@ -5076,7 +5243,7 @@ "cell_set_label": "RNAseq 081-084", "cell_set_accession": "CS202002013_204", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -5084,6 +5251,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84", "_row": "n88" } ], @@ -5108,7 +5276,7 @@ "cell_set_label": "RNAseq 081", "cell_set_accession": "CS202002013_81", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -5116,6 +5284,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "L6b Col6a1" } ] @@ -5135,7 +5304,7 @@ "cell_set_label": "RNAseq 082-084", "cell_set_accession": "CS202002013_205", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -5143,6 +5312,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_82|CS202002013_83|CS202002013_84", "_row": "n89" } ], @@ -5162,7 +5332,7 @@ "cell_set_label": "RNAseq 082-083", "cell_set_accession": "CS202002013_206", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -5170,6 +5340,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_82|CS202002013_83", "_row": "n90" } ], @@ -5194,7 +5365,7 @@ "cell_set_label": "RNAseq 082", "cell_set_accession": "CS202002013_82", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -5202,6 +5373,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "L6b Shisa6_1" } ] @@ -5226,7 +5398,7 @@ "cell_set_label": "RNAseq 083", "cell_set_accession": "CS202002013_83", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -5234,6 +5406,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "L6b Shisa6_2" } ] @@ -5260,7 +5433,7 @@ "cell_set_label": "RNAseq 084", "cell_set_accession": "CS202002013_84", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -5268,6 +5441,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "L6b Ror1" } ] @@ -5296,7 +5470,7 @@ "cell_set_label": "RNAseq 085", "cell_set_accession": "CS202002013_85", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -5304,6 +5478,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "L6b Kcnip1" } ] @@ -5329,7 +5504,7 @@ "cell_set_label": "RNAseq 086-088", "cell_set_accession": "CS202002013_207", "cell_set_aligned_alias": "L5/6 NP", - "cell_set_additional_aliases": "L5/6 NP|Near-projecting", + "cell_set_additional_alias": "L5/6 NP|Near-projecting", "cell_set_alias_assignee": "Zizhen Yao||Nikolas Jorstad|Federico Scala", "cell_set_alias_citation": "10.1101/2020.02.29.970558||10.1101/2020.03.31.016972|10.1101/2020.02.03.929158", "cell_set_structure": "primary motor cortex", @@ -5337,6 +5512,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_86|CS202002013_87|CS202002013_88", "_row": "n91" } ], @@ -5356,7 +5532,7 @@ "cell_set_label": "RNAseq 086-087", "cell_set_accession": "CS202002013_208", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -5364,6 +5540,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_86|CS202002013_87", "_row": "n92" } ], @@ -5388,7 +5565,7 @@ "cell_set_label": "RNAseq 086", "cell_set_accession": "CS202002013_86", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -5396,6 +5573,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "L5/6 NP_1" } ] @@ -5420,7 +5598,7 @@ "cell_set_label": "RNAseq 087", "cell_set_accession": "CS202002013_87", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -5428,6 +5606,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "L5/6 NP_2" } ] @@ -5454,7 +5633,7 @@ "cell_set_label": "RNAseq 088", "cell_set_accession": "CS202002013_88", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -5462,6 +5641,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "L5/6 NP_3" } ] @@ -5487,7 +5667,7 @@ "cell_set_label": "RNAseq 089-090", "cell_set_accession": "CS202002013_209", "cell_set_aligned_alias": "Meis2", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -5495,6 +5675,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_89|CS202002013_90", "_row": "n93" } ], @@ -5519,7 +5700,7 @@ "cell_set_label": "RNAseq 089", "cell_set_accession": "CS202002013_89", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -5527,6 +5708,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Meis2" } ] @@ -5551,7 +5733,7 @@ "cell_set_label": "RNAseq 090", "cell_set_accession": "CS202002013_90", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -5559,6 +5741,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Meis2_Top2a" } ] @@ -5587,7 +5770,7 @@ "cell_set_label": "RNAseq 091", "cell_set_accession": "CS202002013_91", "cell_set_aligned_alias": "OPC", - "cell_set_additional_aliases": "OPC", + "cell_set_additional_alias": "OPC", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -5595,6 +5778,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "OPC Pdgfra" } ] @@ -5616,7 +5800,7 @@ "cell_set_label": "RNAseq 092-094", "cell_set_accession": "CS202002013_210", "cell_set_aligned_alias": "Astrocyte", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -5624,6 +5808,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_92|CS202002013_93|CS202002013_94", "_row": "n94" } ], @@ -5648,7 +5833,7 @@ "cell_set_label": "RNAseq 092", "cell_set_accession": "CS202002013_92", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -5656,6 +5841,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Astro_Top2a" } ] @@ -5675,7 +5861,7 @@ "cell_set_label": "RNAseq 093-094", "cell_set_accession": "CS202002013_211", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "Astro_1", + "cell_set_additional_alias": "Astro_1", "cell_set_alias_assignee": "Zizhen Yao|Nikolas Jorstad", "cell_set_alias_citation": "10.1101/2020.02.29.970558|10.1101/2020.03.31.016972", "cell_set_structure": "primary motor cortex", @@ -5683,6 +5869,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_93|CS202002013_94", "_row": "n95" } ], @@ -5707,7 +5894,7 @@ "cell_set_label": "RNAseq 093", "cell_set_accession": "CS202002013_93", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -5715,6 +5902,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Astro Aqp4_Gfap" } ] @@ -5739,7 +5927,7 @@ "cell_set_label": "RNAseq 094", "cell_set_accession": "CS202002013_94", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -5747,6 +5935,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Astro Aqp4_Slc7a10" } ] @@ -5772,7 +5961,7 @@ "cell_set_label": "RNAseq 095-102", "cell_set_accession": "CS202002013_212", "cell_set_aligned_alias": "Oligodendrocyte", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -5780,6 +5969,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_95|CS202002013_96|CS202002013_97|CS202002013_98|CS202002013_99|CS202002013_100|CS202002013_101|CS202002013_102", "_row": "n96" } ], @@ -5799,7 +5989,7 @@ "cell_set_label": "RNAseq 095-098", "cell_set_accession": "CS202002013_213", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -5807,6 +5997,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_95|CS202002013_96|CS202002013_97|CS202002013_98", "_row": "n97" } ], @@ -5826,7 +6017,7 @@ "cell_set_label": "RNAseq 095-096", "cell_set_accession": "CS202002013_214", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -5834,6 +6025,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_95|CS202002013_96", "_row": "n98" } ], @@ -5858,7 +6050,7 @@ "cell_set_label": "RNAseq 095", "cell_set_accession": "CS202002013_95", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -5866,6 +6058,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Oligo Enpp6_1" } ] @@ -5890,7 +6083,7 @@ "cell_set_label": "RNAseq 096", "cell_set_accession": "CS202002013_96", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -5898,6 +6091,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Oligo Enpp6_2" } ] @@ -5919,7 +6113,7 @@ "cell_set_label": "RNAseq 097-098", "cell_set_accession": "CS202002013_215", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -5927,6 +6121,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_97|CS202002013_98", "_row": "n99" } ], @@ -5951,7 +6146,7 @@ "cell_set_label": "RNAseq 097", "cell_set_accession": "CS202002013_97", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -5959,6 +6154,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Oligo Enpp6_3" } ] @@ -5983,7 +6179,7 @@ "cell_set_label": "RNAseq 098", "cell_set_accession": "CS202002013_98", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -5991,6 +6187,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Oligo Enpp6_4" } ] @@ -6014,7 +6211,7 @@ "cell_set_label": "RNAseq 099-102", "cell_set_accession": "CS202002013_216", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -6022,6 +6219,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_99|CS202002013_100|CS202002013_101|CS202002013_102", "_row": "n100" } ], @@ -6041,7 +6239,7 @@ "cell_set_label": "RNAseq 099-100", "cell_set_accession": "CS202002013_217", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -6049,6 +6247,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_99|CS202002013_100", "_row": "n101" } ], @@ -6073,7 +6272,7 @@ "cell_set_label": "RNAseq 099", "cell_set_accession": "CS202002013_99", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "Oligo_1", + "cell_set_additional_alias": "Oligo_1", "cell_set_alias_assignee": "Zizhen Yao|Nikolas Jorstad", "cell_set_alias_citation": "10.1101/2020.02.29.970558|10.1101/2020.03.31.016972", "cell_set_structure": "primary motor cortex", @@ -6081,6 +6280,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Oligo Opalin_1" } ] @@ -6105,7 +6305,7 @@ "cell_set_label": "RNAseq 100", "cell_set_accession": "CS202002013_100", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -6113,6 +6313,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Oligo Opalin_2" } ] @@ -6134,7 +6335,7 @@ "cell_set_label": "RNAseq 101-102", "cell_set_accession": "CS202002013_218", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -6142,6 +6343,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_101|CS202002013_102", "_row": "n102" } ], @@ -6166,7 +6368,7 @@ "cell_set_label": "RNAseq 101", "cell_set_accession": "CS202002013_101", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -6174,6 +6376,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Oligo Opalin_3" } ] @@ -6198,7 +6401,7 @@ "cell_set_label": "RNAseq 102", "cell_set_accession": "CS202002013_102", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -6206,6 +6409,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Oligo Opalin_4" } ] @@ -6233,7 +6437,7 @@ "cell_set_label": "RNAseq 103-116", "cell_set_accession": "CS202002013_219", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -6241,6 +6445,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_103|CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_108|CS202002013_109|CS202002013_110|CS202002013_111|CS202002013_112|CS202002013_113|CS202002013_114|CS202002013_115|CS202002013_116", "_row": "n103" } ], @@ -6251,16 +6456,16 @@ "members": 10, "midpoint": 3.2188, "height": 0.5684, - "label": "", + "label": "Other NN", "edgePar.col": "#000000", "edgePar.lwd": 2, "edgePar.conf": 1, - "cell_set_preferred_alias": "", + "cell_set_preferred_alias": "Other NN", "original_label": "n104", "cell_set_label": "RNAseq 103-112", "cell_set_accession": "CS202002013_220", - "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_aligned_alias": "Other NN", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -6268,6 +6473,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_103|CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_108|CS202002013_109|CS202002013_110|CS202002013_111|CS202002013_112", "_row": "n104" } ], @@ -6292,7 +6498,7 @@ "cell_set_label": "RNAseq 103", "cell_set_accession": "CS202002013_103", "cell_set_aligned_alias": "Endothelial", - "cell_set_additional_aliases": "Endo", + "cell_set_additional_alias": "Endo", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -6300,6 +6506,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Endo" } ] @@ -6319,7 +6526,7 @@ "cell_set_label": "RNAseq 104-112", "cell_set_accession": "CS202002013_221", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -6327,6 +6534,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_108|CS202002013_109|CS202002013_110|CS202002013_111|CS202002013_112", "_row": "n105" } ], @@ -6346,7 +6554,7 @@ "cell_set_label": "RNAseq 104-110", "cell_set_accession": "CS202002013_222", "cell_set_aligned_alias": "VLMC", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -6354,6 +6562,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_108|CS202002013_109|CS202002013_110", "_row": "n106" } ], @@ -6373,7 +6582,7 @@ "cell_set_label": "RNAseq 104-107", "cell_set_accession": "CS202002013_223", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -6381,6 +6590,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107", "_row": "n107" } ], @@ -6400,7 +6610,7 @@ "cell_set_label": "RNAseq 104-105", "cell_set_accession": "CS202002013_224", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -6408,6 +6618,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_104|CS202002013_105", "_row": "n108" } ], @@ -6432,7 +6643,7 @@ "cell_set_label": "RNAseq 104", "cell_set_accession": "CS202002013_104", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -6440,6 +6651,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "VLMC_1" } ] @@ -6464,7 +6676,7 @@ "cell_set_label": "RNAseq 105", "cell_set_accession": "CS202002013_105", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -6472,6 +6684,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "VLMC_2" } ] @@ -6493,7 +6706,7 @@ "cell_set_label": "RNAseq 106-107", "cell_set_accession": "CS202002013_225", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -6501,6 +6714,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_106|CS202002013_107", "_row": "n109" } ], @@ -6525,7 +6739,7 @@ "cell_set_label": "RNAseq 106", "cell_set_accession": "CS202002013_106", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -6533,6 +6747,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "VLMC_3" } ] @@ -6557,7 +6772,7 @@ "cell_set_label": "RNAseq 107", "cell_set_accession": "CS202002013_107", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -6565,6 +6780,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "VLMC_4" } ] @@ -6588,7 +6804,7 @@ "cell_set_label": "RNAseq 108-110", "cell_set_accession": "CS202002013_226", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -6596,6 +6812,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_108|CS202002013_109|CS202002013_110", "_row": "n110" } ], @@ -6615,7 +6832,7 @@ "cell_set_label": "RNAseq 108-109", "cell_set_accession": "CS202002013_227", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -6623,6 +6840,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_108|CS202002013_109", "_row": "n111" } ], @@ -6647,7 +6865,7 @@ "cell_set_label": "RNAseq 108", "cell_set_accession": "CS202002013_108", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -6655,6 +6873,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "VLMC_5" } ] @@ -6679,7 +6898,7 @@ "cell_set_label": "RNAseq 109", "cell_set_accession": "CS202002013_109", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -6687,6 +6906,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "VLMC_6" } ] @@ -6713,7 +6933,7 @@ "cell_set_label": "RNAseq 110", "cell_set_accession": "CS202002013_110", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -6721,6 +6941,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "VLMC_7" } ] @@ -6744,7 +6965,7 @@ "cell_set_label": "RNAseq 111-112", "cell_set_accession": "CS202002013_228", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -6752,6 +6973,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "CS202002013_111|CS202002013_112", "_row": "n112" } ], @@ -6776,7 +6998,7 @@ "cell_set_label": "RNAseq 111", "cell_set_accession": "CS202002013_111", "cell_set_aligned_alias": "SMC", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -6784,6 +7006,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "SMC" } ] @@ -6808,7 +7031,7 @@ "cell_set_label": "RNAseq 112", "cell_set_accession": "CS202002013_112", "cell_set_aligned_alias": "Pericyte", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -6816,6 +7039,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "Peri" } ] @@ -6841,7 +7065,7 @@ "cell_set_label": "RNAseq 113-116", "cell_set_accession": "CS202002013_229", "cell_set_aligned_alias": "Microglia-PVM", 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"_row": "n115" } ], @@ -6959,7 +7187,7 @@ "cell_set_label": "RNAseq 114", "cell_set_accession": "CS202002013_114", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -6967,6 +7195,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "PVM_1" } ] @@ -6991,7 +7220,7 @@ "cell_set_label": "RNAseq 115", "cell_set_accession": "CS202002013_115", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -6999,6 +7228,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "PVM_2" } ] @@ -7027,7 +7257,7 @@ "cell_set_label": "RNAseq 116", "cell_set_accession": "CS202002013_116", "cell_set_aligned_alias": "", - "cell_set_additional_aliases": "", + "cell_set_additional_alias": "", "cell_set_alias_assignee": "Zizhen Yao", "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", @@ -7035,6 +7265,7 @@ "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "child_cell_set_accessions": "", "_row": "PVM_3" } ] From 8bc66b89d991f52c9c2490133a3b36f7ce8de971 Mon Sep 17 00:00:00 2001 From: Shawn Tan <76212760+shawntanzk@users.noreply.github.com> Date: Tue, 27 Jul 2021 07:53:34 +0100 Subject: [PATCH 07/17] Added 26Jul21 Human json file --- src/dendrograms/CCN201912131.json | 8983 +++++++++++++++++++++++++++++ 1 file changed, 8983 insertions(+) create mode 100644 src/dendrograms/CCN201912131.json diff --git a/src/dendrograms/CCN201912131.json b/src/dendrograms/CCN201912131.json new file mode 100644 index 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<76212760+shawntanzk@users.noreply.github.com> Date: Tue, 27 Jul 2021 08:44:39 +0100 Subject: [PATCH 09/17] 26Jul21 update of nomenclature tables --- .../nomenclature_table_CCN201912131.csv | 362 ++++++------ .../nomenclature_table_CCN201912132.csv | 272 ++++----- .../nomenclature_table_CCN202002011.csv | 222 ++++---- .../nomenclature_table_CCN202002012.csv | 216 ++++---- .../nomenclature_table_CCN202002013.csv | 516 +++++++++--------- .../nomenclature_table_CCN202002270.csv | 118 ++-- .../nomenclature_table_CCN202002271.csv | 42 +- .../nomenclature_table_CCN202002272.csv | 94 ++-- .../nomenclature_table_CCN202002273.csv | 120 ++-- .../nomenclature_table_CCN202002274.csv | 96 ++-- .../nomenclature_table_CCN202002275.csv | 72 +-- .../nomenclature_table_CCN202002276.csv | 124 ++--- .../nomenclature_table_CCN202002277.csv | 94 ++-- .../nomenclature_table_CCN202103210.csv | 254 ++++----- .../nomenclature_table_CCN202103220.csv | 46 +- 15 files changed, 1324 insertions(+), 1324 deletions(-) diff --git a/src/dendrograms/nomenclature_table_CCN201912131.csv b/src/dendrograms/nomenclature_table_CCN201912131.csv index 291908d2..cd7e74b3 100644 --- a/src/dendrograms/nomenclature_table_CCN201912131.csv +++ b/src/dendrograms/nomenclature_table_CCN201912131.csv @@ -1,181 +1,181 @@ -cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions -Inh L1 LAMP5 PVRL2,Inh L1 LAMP5 PVRL2,RNAseq 001,CS201912131_1,,Lamp5_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L1 LAMP5 RAB11FIP1,Inh L1 LAMP5 RAB11FIP1,RNAseq 002,CS201912131_2,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L1-6 LAMP5 AARD,Inh L1-6 LAMP5 AARD,RNAseq 003,CS201912131_3,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L1-6 LAMP5 NES,Inh L1-6 LAMP5 NES,RNAseq 004,CS201912131_4,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L1-6 LAMP5 CA1,Inh L1-6 LAMP5 CA1,RNAseq 005,CS201912131_5,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L5-6 LAMP5 CRABP1,Inh L5-6 LAMP5 CRABP1,RNAseq 006,CS201912131_6,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L3-6 PAX6 LINC01497,Inh L3-6 PAX6 LINC01497,RNAseq 007,CS201912131_7,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L1 PAX6 MIR101-1,Inh L1 PAX6 MIR101-1,RNAseq 008,CS201912131_8,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L1 PAX6 CHRFAM7A,Inh L1 PAX6 CHRFAM7A,RNAseq 009,CS201912131_9,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L1-6 VIP SLC7A6OS,Inh L1-6 VIP SLC7A6OS,RNAseq 010,CS201912131_10,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L2 PAX6 FREM2,Inh L2 PAX6 FREM2,RNAseq 011,CS201912131_11,,Sncg_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L1-2 VIP HTR3A,Inh L1-2 VIP HTR3A,RNAseq 012,CS201912131_12,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L1-2 VIP WNT4,Inh L1-2 VIP WNT4,RNAseq 013,CS201912131_13,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L1 LAMP5 BMP2,Inh L1 LAMP5 BMP2,RNAseq 014,CS201912131_14,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L1 LAMP5 NMBR,Inh L1 LAMP5 NMBR,RNAseq 015,CS201912131_15,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L1 PVALB SST ASIC4,Inh L1 PVALB SST ASIC4,RNAseq 016,CS201912131_16,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L1 SST P4HA3,Inh L1 SST P4HA3,RNAseq 017,CS201912131_17,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L1 SST DEFB108B,Inh L1 SST DEFB108B,RNAseq 018,CS201912131_18,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L1-3 VIP CBLN1,Inh L1-3 VIP CBLN1,RNAseq 019,CS201912131_19,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L1-2 VIP EXPH5,Inh L1-2 VIP EXPH5,RNAseq 020,CS201912131_20,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L1-3 VIP HSPB6,Inh L1-3 VIP HSPB6,RNAseq 021,CS201912131_21,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L1-2 VIP PTGER3,Inh L1-2 VIP PTGER3,RNAseq 022,CS201912131_22,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L1-2 VIP SCML4,Inh L1-2 VIP SCML4,RNAseq 023,CS201912131_23,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L1-3 VIP FNDC1,Inh L1-3 VIP FNDC1,RNAseq 024,CS201912131_24,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L1-3 VIP CHRNA2,Inh L1-3 VIP CHRNA2,RNAseq 025,CS201912131_25,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L2 VIP SLC6A16,Inh L2 VIP SLC6A16,RNAseq 026,CS201912131_26,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L1 VIP KLHDC8B,Inh L1 VIP KLHDC8B,RNAseq 027,CS201912131_27,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L3-5 VIP IGDCC3,Inh L3-5 VIP IGDCC3,RNAseq 028,CS201912131_28,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L1-5 VIP SMOC1,Inh L1-5 VIP SMOC1,RNAseq 029,CS201912131_29,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L3-5 VIP HS3ST3A1,Inh L3-5 VIP HS3ST3A1,RNAseq 030,CS201912131_30,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L5-6 VIP COL4A3,Inh L5-6 VIP COL4A3,RNAseq 031,CS201912131_31,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L1-5 VIP CD27-AS1,Inh L1-5 VIP CD27-AS1,RNAseq 032,CS201912131_32,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L2-5 VIP BSPRY,Inh L2-5 VIP BSPRY,RNAseq 033,CS201912131_33,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L2-5 VIP SOX11,Inh L2-5 VIP SOX11,RNAseq 034,CS201912131_34,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L3-6 VIP ZIM2-AS1,Inh L3-6 VIP ZIM2-AS1,RNAseq 035,CS201912131_35,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L1-5 VIP PHLDB3,Inh L1-5 VIP PHLDB3,RNAseq 036,CS201912131_36,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L1-5 VIP LINC01013,Inh L1-5 VIP LINC01013,RNAseq 037,CS201912131_37,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L3-6 VIP UG0898H09,Inh L3-6 VIP UG0898H09,RNAseq 038,CS201912131_38,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L3-5 VIP TAC3,Inh L3-5 VIP TAC3,RNAseq 039,CS201912131_39,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L1-6 SST NPY,Inh L1-6 SST NPY,RNAseq 040,CS201912131_40,Sst Chodl,Sst Chodl,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L3-5 SST CDH3,Inh L3-5 SST CDH3,RNAseq 041,CS201912131_41,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L5 SST RPL35AP11,Inh L5 SST RPL35AP11,RNAseq 042,CS201912131_42,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L5-6 SST ISX,Inh L5-6 SST ISX,RNAseq 043,CS201912131_43,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L5-6 PVALB SST CRHR2,Inh L5-6 PVALB SST CRHR2,RNAseq 044,CS201912131_44,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L3-5 SST OR5AH1P,Inh L3-5 SST OR5AH1P,RNAseq 045,CS201912131_45,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L3-5 SST GGTLC3,Inh L3-5 SST GGTLC3,RNAseq 046,CS201912131_46,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L2-3 SST NMU,Inh L2-3 SST NMU,RNAseq 047,CS201912131_47,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L5-6 SST PAWR,Inh L5-6 SST PAWR,RNAseq 048,CS201912131_48,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L5-6 SST PIK3CD,Inh L5-6 SST PIK3CD,RNAseq 049,CS201912131_49,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L1-2 SST CCNJL,Inh L1-2 SST CCNJL,RNAseq 050,CS201912131_50,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L1-3 SST FAM20A,Inh L1-3 SST FAM20A,RNAseq 051,CS201912131_51,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L1-2 SST PRRT4,Inh L1-2 SST PRRT4,RNAseq 052,CS201912131_52,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L5-6 SST BEAN1,Inh L5-6 SST BEAN1,RNAseq 053,CS201912131_53,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L5-6 SST DNAJC14,Inh L5-6 SST DNAJC14,RNAseq 054,CS201912131_54,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L5-6 SST C4orf26,Inh L5-6 SST C4orf26,RNAseq 055,CS201912131_55,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L5-6 SST FBN2,Inh L5-6 SST FBN2,RNAseq 056,CS201912131_56,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L5-6 SST KLHL1,Inh L5-6 SST KLHL1,RNAseq 057,CS201912131_57,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L6 SST TH,Inh L6 SST TH,RNAseq 058,CS201912131_58,,Sst_7,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L5-6 PVALB KCNIP2,Inh L5-6 PVALB KCNIP2,RNAseq 059,CS201912131_59,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L5-6 PVALB ZFPM2-AS1,Inh L5-6 PVALB ZFPM2-AS1,RNAseq 060,CS201912131_60,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L3-5 PVALB ISG20,Inh L3-5 PVALB ISG20,RNAseq 061,CS201912131_61,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L5 PVALB LRIG3,Inh L5 PVALB LRIG3,RNAseq 062,CS201912131_62,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L2-5 PVALB HHIPL1,Inh L2-5 PVALB HHIPL1,RNAseq 063,CS201912131_63,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L2-5 PVALB RPH3AL,Inh L2-5 PVALB RPH3AL,RNAseq 064,CS201912131_64,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L3 PVALB SAMD13,Inh L3 PVALB SAMD13,RNAseq 065,CS201912131_65,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L1-2 PVALB CDK20,Inh L1-2 PVALB CDK20,RNAseq 066,CS201912131_66,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L2 PVALB FRZB,Inh L2 PVALB FRZB,RNAseq 067,CS201912131_67,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L1-2 SST CLIC6,Inh L1-2 SST CLIC6,RNAseq 068,CS201912131_68,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L5-6 PVALB GAPDHP60,Inh L5-6 PVALB GAPDHP60,RNAseq 069,CS201912131_69,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L5-6 PVALB FAM150B,Inh L5-6 PVALB FAM150B,RNAseq 070,CS201912131_70,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L5-6 PVALB MEPE,Inh L5-6 PVALB MEPE,RNAseq 071,CS201912131_71,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Inh L1-6 PVALB COL15A1,Inh L1-6 PVALB COL15A1,RNAseq 072,CS201912131_72,Chandelier,Chandelier cell,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L2 LAMP5 KCNG3,Exc L2 LAMP5 KCNG3,RNAseq 073,CS201912131_73,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L2 LINC00507 ATP7B,Exc L2 LINC00507 ATP7B,RNAseq 074,CS201912131_74,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L2 LINC00507 GLRA3,Exc L2 LINC00507 GLRA3,RNAseq 075,CS201912131_75,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L2-3 RORB RTKN2,Exc L2-3 RORB RTKN2,RNAseq 076,CS201912131_76,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L2-3 LINC00507 DSG3,Exc L2-3 LINC00507 DSG3,RNAseq 077,CS201912131_77,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L3 LAMP5 CARM1P1,Exc L3 LAMP5 CARM1P1,RNAseq 078,CS201912131_78,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Oligo L2-6 OPALIN MAP6D1,Oligo L2-6 OPALIN MAP6D1,RNAseq 117,CS201912131_79,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L2-3 RORB CCDC68,Exc L2-3 RORB CCDC68,RNAseq 079,CS201912131_80,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L2-3 RORB PTPN3,Exc L2-3 RORB PTPN3,RNAseq 080,CS201912131_81,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L3 THEMIS ENPEP,Exc L3 THEMIS ENPEP,RNAseq 081,CS201912131_82,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L3-5 RORB TNNT2,Exc L3-5 RORB TNNT2,RNAseq 082,CS201912131_83,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L3-5 RORB LAMA4,Exc L3-5 RORB LAMA4,RNAseq 083,CS201912131_84,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L5 THEMIS VILL,Exc L5 THEMIS VILL,RNAseq 084,CS201912131_85,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L3 RORB OTOGL,Exc L3 RORB OTOGL,RNAseq 085,CS201912131_86,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L3-5 RORB LINC01202,Exc L3-5 RORB LINC01202,RNAseq 086,CS201912131_87,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L5 THEMIS SLC22A18,Exc L5 THEMIS SLC22A18,RNAseq 087,CS201912131_88,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L5-6 THEMIS TNFAIP6,Exc L5-6 THEMIS TNFAIP6,RNAseq 088,CS201912131_89,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L3-5 RORB LNX2,Exc L3-5 RORB LNX2,RNAseq 089,CS201912131_90,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L3-5 RORB RPRM,Exc L3-5 RORB RPRM,RNAseq 090,CS201912131_91,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L5 RORB MED8,Exc L5 RORB MED8,RNAseq 091,CS201912131_92,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L5 THEMIS FGF10,Exc L5 THEMIS FGF10,RNAseq 092,CS201912131_93,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L6 THEMIS LINC00343,Exc L6 THEMIS LINC00343,RNAseq 093,CS201912131_94,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L6 THEMIS SLN,Exc L6 THEMIS SLN,RNAseq 094,CS201912131_95,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L6 THEMIS SNTG2,Exc L6 THEMIS SNTG2,RNAseq 095,CS201912131_96,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L5-6 THEMIS SMYD1,Exc L5-6 THEMIS SMYD1,RNAseq 096,CS201912131_97,L6 IT Car3,L6 IT_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L5-6 FEZF2 OR1L8,Exc L5-6 FEZF2 OR1L8,RNAseq 097,CS201912131_98,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L5 THEMIS LINC01116,Exc L5 THEMIS LINC01116,RNAseq 098,CS201912131_99,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L5 THEMIS RGPD6,Exc L5 THEMIS RGPD6,RNAseq 099,CS201912131_100,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L5-6 FEZF2 C9orf135-AS1,Exc L5-6 FEZF2 C9orf135-AS1,RNAseq 100,CS201912131_101,,L6 CT_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L5-6 FEZF2 FILIP1L,Exc L5-6 FEZF2 FILIP1L,RNAseq 101,CS201912131_102,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L5-6 FEZF2 SH2D1B,Exc L5-6 FEZF2 SH2D1B,RNAseq 102,CS201912131_103,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L6 FEZF2 PDYN,Exc L6 FEZF2 PDYN,RNAseq 103,CS201912131_104,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L6 FEZF2 FFAR4,Exc L6 FEZF2 FFAR4,RNAseq 104,CS201912131_105,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L6 FEZF2 PROKR2,Exc L6 FEZF2 PROKR2,RNAseq 105,CS201912131_106,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L5-6 FEZF2 CFTR,Exc L5-6 FEZF2 CFTR,RNAseq 106,CS201912131_107,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L6 FEZF2 KLK7,Exc L6 FEZF2 KLK7,RNAseq 107,CS201912131_108,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L6 FEZF2 POGK,Exc L6 FEZF2 POGK,RNAseq 108,CS201912131_109,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L5 FEZF2 CSN1S1,Exc L5 FEZF2 CSN1S1,RNAseq 109,CS201912131_110,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L3-5 FEZF2 ASGR2,Exc L3-5 FEZF2 ASGR2,RNAseq 110,CS201912131_111,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L3-5 FEZF2 LINC01107,Exc L3-5 FEZF2 LINC01107,RNAseq 111,CS201912131_112,,L5 ET_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L5 FEZF2 PKD2L1,Exc L5 FEZF2 PKD2L1,RNAseq 112,CS201912131_113,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L5 FEZF2 NREP-AS1,Exc L5 FEZF2 NREP-AS1,RNAseq 113,CS201912131_114,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L5 FEZF2 RNF144A-AS1,Exc L5 FEZF2 RNF144A-AS1,RNAseq 114,CS201912131_115,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L5-6 FEZF2 IFNG-AS1,Exc L5-6 FEZF2 IFNG-AS1,RNAseq 115,CS201912131_116,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Exc L5-6 FEZF2 LPO,Exc L5-6 FEZF2 LPO,RNAseq 116,CS201912131_117,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -OPC L1-6 PDGFRA COL20A1,OPC L1-6 PDGFRA COL20A1,RNAseq 118,CS201912131_118,OPC,OPC,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Oligo L3-6 OPALIN ENPP6,Oligo L3-6 OPALIN ENPP6,RNAseq 119,CS201912131_119,,Oligo_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Oligo L2-6 OPALIN FTH1P3,Oligo L2-6 OPALIN FTH1P3,RNAseq 120,CS201912131_120,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Oligo L5-6 OPALIN LDLRAP1,Oligo L5-6 OPALIN LDLRAP1,RNAseq 121,CS201912131_121,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Astro L1-6 FGFR3 AQP1,Astro L1-6 FGFR3 AQP1,RNAseq 122,CS201912131_122,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Astro L1 FGFR3 SERPINI2,Astro L1 FGFR3 SERPINI2,RNAseq 123,CS201912131_123,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Astro L1-6 FGFR3 PLCG1,Astro L1-6 FGFR3 PLCG1,RNAseq 124,CS201912131_124,,Astro_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Endo L2-5 NOSTRIN SRGN,Endo L2-5 NOSTRIN SRGN,RNAseq 125,CS201912131_125,Endothelial,Endo,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -VLMC L1-5 PDGFRA COLEC12,VLMC L1-5 PDGFRA COLEC12,RNAseq 126,CS201912131_126,VLMC,VLMC,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Micro L1-6 TYROBP CD74,Micro L1-6 TYROBP CD74,RNAseq 127,CS201912131_127,Microglia-PVM,Microglia/PVM,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq, -Lamp5,Lamp5,"RNAseq 001-008, 014-015",CS201912131_128,Lamp5,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_1|CS201912131_2|CS201912131_3|CS201912131_4|CS201912131_5|CS201912131_6|CS201912131_7|CS201912131_8|CS201912131_14|CS201912131_15 -Sncg,Sncg,"RNAseq 009-013, 016-018",CS201912131_129,Sncg,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_9|CS201912131_10|CS201912131_11|CS201912131_12|CS201912131_13|CS201912131_16|CS201912131_17|CS201912131_18 -Vip,Vip,RNAseq 019-039,CS201912131_130,Vip,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_19|CS201912131_20|CS201912131_21|CS201912131_22|CS201912131_23|CS201912131_24|CS201912131_25|CS201912131_26|CS201912131_27|CS201912131_28|CS201912131_29|CS201912131_30|CS201912131_31|CS201912131_32|CS201912131_33|CS201912131_34|CS201912131_35|CS201912131_36|CS201912131_37|CS201912131_38|CS201912131_39 -Sst,Sst,RNAseq 041-058,CS201912131_131,Sst,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_41|CS201912131_42|CS201912131_43|CS201912131_44|CS201912131_45|CS201912131_46|CS201912131_47|CS201912131_48|CS201912131_49|CS201912131_50|CS201912131_51|CS201912131_52|CS201912131_53|CS201912131_54|CS201912131_55|CS201912131_56|CS201912131_57|CS201912131_58 -Pvalb,Pvalb,RNAseq 059-072,CS201912131_132,Pvalb,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_59|CS201912131_60|CS201912131_61|CS201912131_62|CS201912131_63|CS201912131_64|CS201912131_65|CS201912131_66|CS201912131_67|CS201912131_68|CS201912131_69|CS201912131_70|CS201912131_71|CS201912131_72 -L2/3 IT,L2/3 IT,RNAseq 073-080,CS201912131_133,L2/3 IT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_73|CS201912131_74|CS201912131_75|CS201912131_76|CS201912131_77|CS201912131_78|CS201912131_80|CS201912131_81 -L5 IT,L5 IT,RNAseq 081-092,CS201912131_134,L5 IT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_82|CS201912131_83|CS201912131_84|CS201912131_85|CS201912131_86|CS201912131_87|CS201912131_88|CS201912131_89|CS201912131_90|CS201912131_91|CS201912131_92|CS201912131_93 -L6 IT,L6 IT,RNAseq 093-095,CS201912131_135,L6 IT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_94|CS201912131_95|CS201912131_96 -L6 CT,L6 CT,RNAseq 097-102,CS201912131_136,L6 CT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_98|CS201912131_99|CS201912131_100|CS201912131_101|CS201912131_102|CS201912131_103 -L6b,L6b,RNAseq 103-108,CS201912131_137,L6b,L6b,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_104|CS201912131_105|CS201912131_106|CS201912131_107|CS201912131_108|CS201912131_109 -L5 ET,L5 ET,RNAseq 109-111,CS201912131_138,L5 ET,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_110|CS201912131_111|CS201912131_112 -L5/6 NP,L5/6 NP,RNAseq 112-116,CS201912131_139,L5/6 NP,L5/6 NP,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_113|CS201912131_114|CS201912131_115|CS201912131_116|CS201912131_117 -Oligo,Oligo,"RNAseq 117, 119-121",CS201912131_140,Oligodendrocyte,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_79|CS201912131_119|CS201912131_120|CS201912131_121 -Astro,Astro,RNAseq 122-124,CS201912131_142,Astrocyte,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_122|CS201912131_123|CS201912131_124 -CGE/PoA,CGE/PoA,RNAseq 001-039,CS201912131_143,CGE/PoA,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_1|CS201912131_2|CS201912131_3|CS201912131_4|CS201912131_5|CS201912131_6|CS201912131_7|CS201912131_8|CS201912131_9|CS201912131_10|CS201912131_11|CS201912131_12|CS201912131_13|CS201912131_14|CS201912131_15|CS201912131_16|CS201912131_17|CS201912131_18|CS201912131_19|CS201912131_20|CS201912131_21|CS201912131_22|CS201912131_23|CS201912131_24|CS201912131_25|CS201912131_26|CS201912131_27|CS201912131_28|CS201912131_29|CS201912131_30|CS201912131_31|CS201912131_32|CS201912131_33|CS201912131_34|CS201912131_35|CS201912131_36|CS201912131_37|CS201912131_38|CS201912131_39 -MGE,MGE,RNAseq 040-072,CS201912131_144,MGE,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_40|CS201912131_41|CS201912131_42|CS201912131_43|CS201912131_44|CS201912131_45|CS201912131_46|CS201912131_47|CS201912131_48|CS201912131_49|CS201912131_50|CS201912131_51|CS201912131_52|CS201912131_53|CS201912131_54|CS201912131_55|CS201912131_56|CS201912131_57|CS201912131_58|CS201912131_59|CS201912131_60|CS201912131_61|CS201912131_62|CS201912131_63|CS201912131_64|CS201912131_65|CS201912131_66|CS201912131_67|CS201912131_68|CS201912131_69|CS201912131_70|CS201912131_71|CS201912131_72 -IT projecting,IT projecting,RNAseq 073-096,CS201912131_145,IT projecting,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_73|CS201912131_74|CS201912131_75|CS201912131_76|CS201912131_77|CS201912131_78|CS201912131_80|CS201912131_81|CS201912131_82|CS201912131_83|CS201912131_84|CS201912131_85|CS201912131_86|CS201912131_87|CS201912131_88|CS201912131_89|CS201912131_90|CS201912131_91|CS201912131_92|CS201912131_93|CS201912131_94|CS201912131_95|CS201912131_96|CS201912131_97 -Non-IT projecting,Non-IT projecting,RNAseq 097-116,CS201912131_146,Non-IT projecting,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_98|CS201912131_99|CS201912131_100|CS201912131_101|CS201912131_102|CS201912131_103|CS201912131_104|CS201912131_105|CS201912131_106|CS201912131_107|CS201912131_108|CS201912131_109|CS201912131_110|CS201912131_111|CS201912131_112|CS201912131_113|CS201912131_114|CS201912131_115|CS201912131_116|CS201912131_117 -Oligo-OPC,Oligo-OPC,RNAseq 116-120,CS201912131_147,Oligodendrocyte-OPC,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_79|CS201912131_117|CS201912131_118|CS201912131_119|CS201912131_120 -Other NN,Other NN,RNAseq 125-127,CS201912131_148,Non-neural,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_125|CS201912131_126|CS201912131_127 -GABAergic,GABAergic,RNAseq 001-072,CS201912131_149,Neuronal: GABAergic,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_1|CS201912131_2|CS201912131_3|CS201912131_4|CS201912131_5|CS201912131_6|CS201912131_7|CS201912131_8|CS201912131_9|CS201912131_10|CS201912131_11|CS201912131_12|CS201912131_13|CS201912131_14|CS201912131_15|CS201912131_16|CS201912131_17|CS201912131_18|CS201912131_19|CS201912131_20|CS201912131_21|CS201912131_22|CS201912131_23|CS201912131_24|CS201912131_25|CS201912131_26|CS201912131_27|CS201912131_28|CS201912131_29|CS201912131_30|CS201912131_31|CS201912131_32|CS201912131_33|CS201912131_34|CS201912131_35|CS201912131_36|CS201912131_37|CS201912131_38|CS201912131_39|CS201912131_40|CS201912131_41|CS201912131_42|CS201912131_43|CS201912131_44|CS201912131_45|CS201912131_46|CS201912131_47|CS201912131_48|CS201912131_49|CS201912131_50|CS201912131_51|CS201912131_52|CS201912131_53|CS201912131_54|CS201912131_55|CS201912131_56|CS201912131_57|CS201912131_58|CS201912131_59|CS201912131_60|CS201912131_61|CS201912131_62|CS201912131_63|CS201912131_64|CS201912131_65|CS201912131_66|CS201912131_67|CS201912131_68|CS201912131_69|CS201912131_70|CS201912131_71|CS201912131_72 -Glutamatergic,Glutamatergic,RNAseq 073-116,CS201912131_150,Neuronal: Glutamatergic,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_73|CS201912131_74|CS201912131_75|CS201912131_76|CS201912131_77|CS201912131_78|CS201912131_80|CS201912131_81|CS201912131_82|CS201912131_83|CS201912131_84|CS201912131_85|CS201912131_86|CS201912131_87|CS201912131_88|CS201912131_89|CS201912131_90|CS201912131_91|CS201912131_92|CS201912131_93|CS201912131_94|CS201912131_95|CS201912131_96|CS201912131_97|CS201912131_98|CS201912131_99|CS201912131_100|CS201912131_101|CS201912131_102|CS201912131_103|CS201912131_104|CS201912131_105|CS201912131_106|CS201912131_107|CS201912131_108|CS201912131_109|CS201912131_110|CS201912131_111|CS201912131_112|CS201912131_113|CS201912131_114|CS201912131_115|CS201912131_116|CS201912131_117 -Non-Neuronal,Non-Neuronal,RNAseq 117-124,CS201912131_151,Non-neuronal,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_79|CS201912131_118|CS201912131_119|CS201912131_120|CS201912131_121|CS201912131_122|CS201912131_123|CS201912131_124 -Lamp5_C2,Lamp5_C2,RNAseq 002-004,CS201912131_152,,Lamp5_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_2|CS201912131_3|CS201912131_4 -Lamp5_C3,Lamp5_C3,RNAseq 005-006,CS201912131_153,Lamp5 Lhx6,Lamp5_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_5|CS201912131_6 -Lamp5_C4,Lamp5_C4,RNAseq 007-008,CS201912131_154,,Lamp5_4,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_7|CS201912131_8 -Sncg_C1,Sncg_C1,RNAseq 009-010,CS201912131_155,,Sncg_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_9|CS201912131_10 -Sncg_C3,Sncg_C3,RNAseq 012-013,CS201912131_156,,Sncg_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_12|CS201912131_13 -Lamp5_C5,Lamp5_C5,RNAseq 014-015,CS201912131_157,,Lamp5_5,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_14|CS201912131_15 -Sncg_C4,Sncg_C4,RNAseq 016-018,CS201912131_158,,Sncg_4,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_16|CS201912131_17|CS201912131_18 -Vip_C1,Vip_C1,RNAseq 019-021,CS201912131_159,,Vip_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_19|CS201912131_20|CS201912131_21 -Vip_C2,Vip_C2,"RNAseq 022-028, 039",CS201912131_160,,Vip_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_22|CS201912131_23|CS201912131_24|CS201912131_25|CS201912131_26|CS201912131_27|CS201912131_28|CS201912131_39 -Vip_C3,Vip_C3,RNAseq 029-033,CS201912131_161,,Vip_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_29|CS201912131_30|CS201912131_31|CS201912131_32|CS201912131_33 -Vip_C4,Vip_C4,RNAseq 034-038,CS201912131_162,,Vip_4,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_34|CS201912131_35|CS201912131_36|CS201912131_37|CS201912131_38 -Sst_C1,Sst_C1,RNAseq 041-042,CS201912131_163,,Sst_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_41|CS201912131_42 -Sst_C2,Sst_C2,RNAseq 043-045,CS201912131_164,,Sst_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_43|CS201912131_44|CS201912131_45 -Sst_C3,Sst_C3,"RNAseq 046-047, 050-052",CS201912131_165,,Sst_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_46|CS201912131_47|CS201912131_50|CS201912131_51|CS201912131_52 -Sst_C4,Sst_C4,RNAseq 048-049,CS201912131_166,,Sst_4,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_48|CS201912131_49 -Sst_C5,Sst_C5,RNAseq 053-054,CS201912131_167,,Sst_5,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_53|CS201912131_54 -Sst_C6,Sst_C6,RNAseq 055-057,CS201912131_168,,Sst_6,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_55|CS201912131_56|CS201912131_57 -Pvalb_C1,Pvalb_C1,RNAseq 059-068,CS201912131_169,,Pvalb_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_59|CS201912131_60|CS201912131_61|CS201912131_62|CS201912131_63|CS201912131_64|CS201912131_65|CS201912131_66|CS201912131_67|CS201912131_68 -Pvalb_C2,Pvalb_C2,RNAseq 069-071,CS201912131_170,,Pvalb_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_69|CS201912131_70|CS201912131_71 -L2/3 IT(i),L2/3 IT(i),RNAseq 073-078,CS201912131_171,,L2/3 IT,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_73|CS201912131_74|CS201912131_75|CS201912131_76|CS201912131_77|CS201912131_78 -L5 IT_C1,L5 IT_C1,RNAseq 079-086,CS201912131_172,,L5 IT_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_80|CS201912131_81|CS201912131_82|CS201912131_83|CS201912131_84|CS201912131_85|CS201912131_86|CS201912131_87 -L5 IT_C2,L5 IT_C2,"RNAseq 087, 089-090",CS201912131_173,,L5 IT_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_88|CS201912131_90|CS201912131_91 -L6 IT_C2,L6 IT_C2,"RNAseq 088, 095",CS201912131_174,,L6 IT_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_89|CS201912131_96 -L5 IT_C3,L5 IT_C3,RNAseq 091-092,CS201912131_175,,L5 IT_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_92|CS201912131_93 -L6 IT_C1,L6 IT_C1,RNAseq 093-094,CS201912131_176,,L6 IT_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_94|CS201912131_95 -L6 CT_C1,L6 CT_C1,"RNAseq 097-099, 101-102",CS201912131_177,,L6 CT_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_98|CS201912131_99|CS201912131_100|CS201912131_102|CS201912131_103 -L5 ET_C1,L5 ET_C1,RNAseq 109-110,CS201912131_178,,L5 ET_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_110|CS201912131_111 -Oligo_C2,Oligo_C2,RNAseq 120-121,CS201912131_179,,Oligo_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_120|CS201912131_121 -Astro_C1,Astro_C1,RNAseq 122-123,CS201912131_180,,Astro_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_122|CS201912131_123 -,All cells,RNAseq 001-127,CS201912131_181,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_1|CS201912131_2|CS201912131_3|CS201912131_4|CS201912131_5|CS201912131_6|CS201912131_7|CS201912131_8|CS201912131_9|CS201912131_10|CS201912131_11|CS201912131_12|CS201912131_13|CS201912131_14|CS201912131_15|CS201912131_16|CS201912131_17|CS201912131_18|CS201912131_19|CS201912131_20|CS201912131_21|CS201912131_22|CS201912131_23|CS201912131_24|CS201912131_25|CS201912131_26|CS201912131_27|CS201912131_28|CS201912131_29|CS201912131_30|CS201912131_31|CS201912131_32|CS201912131_33|CS201912131_34|CS201912131_35|CS201912131_36|CS201912131_37|CS201912131_38|CS201912131_39|CS201912131_40|CS201912131_41|CS201912131_42|CS201912131_43|CS201912131_44|CS201912131_45|CS201912131_46|CS201912131_47|CS201912131_48|CS201912131_49|CS201912131_50|CS201912131_51|CS201912131_52|CS201912131_53|CS201912131_54|CS201912131_55|CS201912131_56|CS201912131_57|CS201912131_58|CS201912131_59|CS201912131_60|CS201912131_61|CS201912131_62|CS201912131_63|CS201912131_64|CS201912131_65|CS201912131_66|CS201912131_67|CS201912131_68|CS201912131_69|CS201912131_70|CS201912131_71|CS201912131_72|CS201912131_73|CS201912131_74|CS201912131_75|CS201912131_76|CS201912131_77|CS201912131_78|CS201912131_79|CS201912131_80|CS201912131_81|CS201912131_82|CS201912131_83|CS201912131_84|CS201912131_85|CS201912131_86|CS201912131_87|CS201912131_88|CS201912131_89|CS201912131_90|CS201912131_91|CS201912131_92|CS201912131_93|CS201912131_94|CS201912131_95|CS201912131_96|CS201912131_97|CS201912131_98|CS201912131_99|CS201912131_100|CS201912131_101|CS201912131_102|CS201912131_103|CS201912131_104|CS201912131_105|CS201912131_106|CS201912131_107|CS201912131_108|CS201912131_109|CS201912131_110|CS201912131_111|CS201912131_112|CS201912131_113|CS201912131_114|CS201912131_115|CS201912131_116|CS201912131_117|CS201912131_118|CS201912131_119|CS201912131_120|CS201912131_121|CS201912131_122|CS201912131_123|CS201912131_124|CS201912131_125|CS201912131_126|CS201912131_127 \ No newline at end of file +cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions,cell_type_card +Inh L1 LAMP5 PVRL2,Inh L1 LAMP5 PVRL2,RNAseq 001,CS201912131_1,,Lamp5_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L1 LAMP5 RAB11FIP1,Inh L1 LAMP5 RAB11FIP1,RNAseq 002,CS201912131_2,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L1-6 LAMP5 AARD,Inh L1-6 LAMP5 AARD,RNAseq 003,CS201912131_3,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L1-6 LAMP5 NES,Inh L1-6 LAMP5 NES,RNAseq 004,CS201912131_4,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L1-6 LAMP5 CA1,Inh L1-6 LAMP5 CA1,RNAseq 005,CS201912131_5,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L5-6 LAMP5 CRABP1,Inh L5-6 LAMP5 CRABP1,RNAseq 006,CS201912131_6,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L3-6 PAX6 LINC01497,Inh L3-6 PAX6 LINC01497,RNAseq 007,CS201912131_7,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L1 PAX6 MIR101-1,Inh L1 PAX6 MIR101-1,RNAseq 008,CS201912131_8,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L1 PAX6 CHRFAM7A,Inh L1 PAX6 CHRFAM7A,RNAseq 009,CS201912131_9,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L1-6 VIP SLC7A6OS,Inh L1-6 VIP SLC7A6OS,RNAseq 010,CS201912131_10,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L2 PAX6 FREM2,Inh L2 PAX6 FREM2,RNAseq 011,CS201912131_11,,Sncg_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L1-2 VIP HTR3A,Inh L1-2 VIP HTR3A,RNAseq 012,CS201912131_12,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L1-2 VIP WNT4,Inh L1-2 VIP WNT4,RNAseq 013,CS201912131_13,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L1 LAMP5 BMP2,Inh L1 LAMP5 BMP2,RNAseq 014,CS201912131_14,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L1 LAMP5 NMBR,Inh L1 LAMP5 NMBR,RNAseq 015,CS201912131_15,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L1 PVALB SST ASIC4,Inh L1 PVALB SST ASIC4,RNAseq 016,CS201912131_16,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L1 SST P4HA3,Inh L1 SST P4HA3,RNAseq 017,CS201912131_17,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L1 SST DEFB108B,Inh L1 SST DEFB108B,RNAseq 018,CS201912131_18,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L1-3 VIP CBLN1,Inh L1-3 VIP CBLN1,RNAseq 019,CS201912131_19,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L1-2 VIP EXPH5,Inh L1-2 VIP EXPH5,RNAseq 020,CS201912131_20,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L1-3 VIP HSPB6,Inh L1-3 VIP HSPB6,RNAseq 021,CS201912131_21,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L1-2 VIP PTGER3,Inh L1-2 VIP PTGER3,RNAseq 022,CS201912131_22,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L1-2 VIP SCML4,Inh L1-2 VIP SCML4,RNAseq 023,CS201912131_23,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L1-3 VIP FNDC1,Inh L1-3 VIP FNDC1,RNAseq 024,CS201912131_24,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L1-3 VIP CHRNA2,Inh L1-3 VIP CHRNA2,RNAseq 025,CS201912131_25,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L2 VIP SLC6A16,Inh L2 VIP SLC6A16,RNAseq 026,CS201912131_26,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L1 VIP KLHDC8B,Inh L1 VIP KLHDC8B,RNAseq 027,CS201912131_27,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L3-5 VIP IGDCC3,Inh L3-5 VIP IGDCC3,RNAseq 028,CS201912131_28,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L1-5 VIP SMOC1,Inh L1-5 VIP SMOC1,RNAseq 029,CS201912131_29,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L3-5 VIP HS3ST3A1,Inh L3-5 VIP HS3ST3A1,RNAseq 030,CS201912131_30,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L5-6 VIP COL4A3,Inh L5-6 VIP COL4A3,RNAseq 031,CS201912131_31,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L1-5 VIP CD27-AS1,Inh L1-5 VIP CD27-AS1,RNAseq 032,CS201912131_32,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L2-5 VIP BSPRY,Inh L2-5 VIP BSPRY,RNAseq 033,CS201912131_33,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L2-5 VIP SOX11,Inh L2-5 VIP SOX11,RNAseq 034,CS201912131_34,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L3-6 VIP ZIM2-AS1,Inh L3-6 VIP ZIM2-AS1,RNAseq 035,CS201912131_35,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L1-5 VIP PHLDB3,Inh L1-5 VIP PHLDB3,RNAseq 036,CS201912131_36,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L1-5 VIP LINC01013,Inh L1-5 VIP LINC01013,RNAseq 037,CS201912131_37,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L3-6 VIP UG0898H09,Inh L3-6 VIP UG0898H09,RNAseq 038,CS201912131_38,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L3-5 VIP TAC3,Inh L3-5 VIP TAC3,RNAseq 039,CS201912131_39,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L1-6 SST NPY,Inh L1-6 SST NPY,RNAseq 040,CS201912131_40,Sst Chodl,Sst Chodl,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,"Cell Type,Subclass" +Inh L3-5 SST CDH3,Inh L3-5 SST CDH3,RNAseq 041,CS201912131_41,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L5 SST RPL35AP11,Inh L5 SST RPL35AP11,RNAseq 042,CS201912131_42,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L5-6 SST ISX,Inh L5-6 SST ISX,RNAseq 043,CS201912131_43,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L5-6 PVALB SST CRHR2,Inh L5-6 PVALB SST CRHR2,RNAseq 044,CS201912131_44,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L3-5 SST OR5AH1P,Inh L3-5 SST OR5AH1P,RNAseq 045,CS201912131_45,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L3-5 SST GGTLC3,Inh L3-5 SST GGTLC3,RNAseq 046,CS201912131_46,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L2-3 SST NMU,Inh L2-3 SST NMU,RNAseq 047,CS201912131_47,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L5-6 SST PAWR,Inh L5-6 SST PAWR,RNAseq 048,CS201912131_48,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L5-6 SST PIK3CD,Inh L5-6 SST PIK3CD,RNAseq 049,CS201912131_49,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L1-2 SST CCNJL,Inh L1-2 SST CCNJL,RNAseq 050,CS201912131_50,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L1-3 SST FAM20A,Inh L1-3 SST FAM20A,RNAseq 051,CS201912131_51,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L1-2 SST PRRT4,Inh L1-2 SST PRRT4,RNAseq 052,CS201912131_52,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L5-6 SST BEAN1,Inh L5-6 SST BEAN1,RNAseq 053,CS201912131_53,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L5-6 SST DNAJC14,Inh L5-6 SST DNAJC14,RNAseq 054,CS201912131_54,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L5-6 SST C4orf26,Inh L5-6 SST C4orf26,RNAseq 055,CS201912131_55,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L5-6 SST FBN2,Inh L5-6 SST FBN2,RNAseq 056,CS201912131_56,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L5-6 SST KLHL1,Inh L5-6 SST KLHL1,RNAseq 057,CS201912131_57,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L6 SST TH,Inh L6 SST TH,RNAseq 058,CS201912131_58,,Sst_7,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L5-6 PVALB KCNIP2,Inh L5-6 PVALB KCNIP2,RNAseq 059,CS201912131_59,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L5-6 PVALB ZFPM2-AS1,Inh L5-6 PVALB ZFPM2-AS1,RNAseq 060,CS201912131_60,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L3-5 PVALB ISG20,Inh L3-5 PVALB ISG20,RNAseq 061,CS201912131_61,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L5 PVALB LRIG3,Inh L5 PVALB LRIG3,RNAseq 062,CS201912131_62,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L2-5 PVALB HHIPL1,Inh L2-5 PVALB HHIPL1,RNAseq 063,CS201912131_63,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L2-5 PVALB RPH3AL,Inh L2-5 PVALB RPH3AL,RNAseq 064,CS201912131_64,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L3 PVALB SAMD13,Inh L3 PVALB SAMD13,RNAseq 065,CS201912131_65,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L1-2 PVALB CDK20,Inh L1-2 PVALB CDK20,RNAseq 066,CS201912131_66,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L2 PVALB FRZB,Inh L2 PVALB FRZB,RNAseq 067,CS201912131_67,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L1-2 SST CLIC6,Inh L1-2 SST CLIC6,RNAseq 068,CS201912131_68,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L5-6 PVALB GAPDHP60,Inh L5-6 PVALB GAPDHP60,RNAseq 069,CS201912131_69,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L5-6 PVALB FAM150B,Inh L5-6 PVALB FAM150B,RNAseq 070,CS201912131_70,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L5-6 PVALB MEPE,Inh L5-6 PVALB MEPE,RNAseq 071,CS201912131_71,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Inh L1-6 PVALB COL15A1,Inh L1-6 PVALB COL15A1,RNAseq 072,CS201912131_72,Chandelier,Chandelier cell,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L2 LAMP5 KCNG3,Exc L2 LAMP5 KCNG3,RNAseq 073,CS201912131_73,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L2 LINC00507 ATP7B,Exc L2 LINC00507 ATP7B,RNAseq 074,CS201912131_74,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L2 LINC00507 GLRA3,Exc L2 LINC00507 GLRA3,RNAseq 075,CS201912131_75,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L2-3 RORB RTKN2,Exc L2-3 RORB RTKN2,RNAseq 076,CS201912131_76,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L2-3 LINC00507 DSG3,Exc L2-3 LINC00507 DSG3,RNAseq 077,CS201912131_77,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L3 LAMP5 CARM1P1,Exc L3 LAMP5 CARM1P1,RNAseq 078,CS201912131_78,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Oligo L2-6 OPALIN MAP6D1,Oligo L2-6 OPALIN MAP6D1,RNAseq 117,CS201912131_79,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L2-3 RORB CCDC68,Exc L2-3 RORB CCDC68,RNAseq 079,CS201912131_80,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L2-3 RORB PTPN3,Exc L2-3 RORB PTPN3,RNAseq 080,CS201912131_81,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L3 THEMIS ENPEP,Exc L3 THEMIS ENPEP,RNAseq 081,CS201912131_82,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L3-5 RORB TNNT2,Exc L3-5 RORB TNNT2,RNAseq 082,CS201912131_83,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L3-5 RORB LAMA4,Exc L3-5 RORB LAMA4,RNAseq 083,CS201912131_84,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L5 THEMIS VILL,Exc L5 THEMIS VILL,RNAseq 084,CS201912131_85,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L3 RORB OTOGL,Exc L3 RORB OTOGL,RNAseq 085,CS201912131_86,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L3-5 RORB LINC01202,Exc L3-5 RORB LINC01202,RNAseq 086,CS201912131_87,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L5 THEMIS SLC22A18,Exc L5 THEMIS SLC22A18,RNAseq 087,CS201912131_88,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L5-6 THEMIS TNFAIP6,Exc L5-6 THEMIS TNFAIP6,RNAseq 088,CS201912131_89,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L3-5 RORB LNX2,Exc L3-5 RORB LNX2,RNAseq 089,CS201912131_90,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L3-5 RORB RPRM,Exc L3-5 RORB RPRM,RNAseq 090,CS201912131_91,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L5 RORB MED8,Exc L5 RORB MED8,RNAseq 091,CS201912131_92,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L5 THEMIS FGF10,Exc L5 THEMIS FGF10,RNAseq 092,CS201912131_93,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L6 THEMIS LINC00343,Exc L6 THEMIS LINC00343,RNAseq 093,CS201912131_94,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L6 THEMIS SLN,Exc L6 THEMIS SLN,RNAseq 094,CS201912131_95,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L6 THEMIS SNTG2,Exc L6 THEMIS SNTG2,RNAseq 095,CS201912131_96,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L5-6 THEMIS SMYD1,Exc L5-6 THEMIS SMYD1,RNAseq 096,CS201912131_97,L6 IT Car3,L6 IT_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,"Cell Type,Subclass" +Exc L5-6 FEZF2 OR1L8,Exc L5-6 FEZF2 OR1L8,RNAseq 097,CS201912131_98,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L5 THEMIS LINC01116,Exc L5 THEMIS LINC01116,RNAseq 098,CS201912131_99,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L5 THEMIS RGPD6,Exc L5 THEMIS RGPD6,RNAseq 099,CS201912131_100,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L5-6 FEZF2 C9orf135-AS1,Exc L5-6 FEZF2 C9orf135-AS1,RNAseq 100,CS201912131_101,,L6 CT_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L5-6 FEZF2 FILIP1L,Exc L5-6 FEZF2 FILIP1L,RNAseq 101,CS201912131_102,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L5-6 FEZF2 SH2D1B,Exc L5-6 FEZF2 SH2D1B,RNAseq 102,CS201912131_103,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L6 FEZF2 PDYN,Exc L6 FEZF2 PDYN,RNAseq 103,CS201912131_104,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L6 FEZF2 FFAR4,Exc L6 FEZF2 FFAR4,RNAseq 104,CS201912131_105,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L6 FEZF2 PROKR2,Exc L6 FEZF2 PROKR2,RNAseq 105,CS201912131_106,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L5-6 FEZF2 CFTR,Exc L5-6 FEZF2 CFTR,RNAseq 106,CS201912131_107,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L6 FEZF2 KLK7,Exc L6 FEZF2 KLK7,RNAseq 107,CS201912131_108,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L6 FEZF2 POGK,Exc L6 FEZF2 POGK,RNAseq 108,CS201912131_109,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L5 FEZF2 CSN1S1,Exc L5 FEZF2 CSN1S1,RNAseq 109,CS201912131_110,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L3-5 FEZF2 ASGR2,Exc L3-5 FEZF2 ASGR2,RNAseq 110,CS201912131_111,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L3-5 FEZF2 LINC01107,Exc L3-5 FEZF2 LINC01107,RNAseq 111,CS201912131_112,,L5 ET_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L5 FEZF2 PKD2L1,Exc L5 FEZF2 PKD2L1,RNAseq 112,CS201912131_113,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L5 FEZF2 NREP-AS1,Exc L5 FEZF2 NREP-AS1,RNAseq 113,CS201912131_114,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L5 FEZF2 RNF144A-AS1,Exc L5 FEZF2 RNF144A-AS1,RNAseq 114,CS201912131_115,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L5-6 FEZF2 IFNG-AS1,Exc L5-6 FEZF2 IFNG-AS1,RNAseq 115,CS201912131_116,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Exc L5-6 FEZF2 LPO,Exc L5-6 FEZF2 LPO,RNAseq 116,CS201912131_117,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +OPC L1-6 PDGFRA COL20A1,OPC L1-6 PDGFRA COL20A1,RNAseq 118,CS201912131_118,OPC,OPC,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,"Cell Type,Subclass" +Oligo L3-6 OPALIN ENPP6,Oligo L3-6 OPALIN ENPP6,RNAseq 119,CS201912131_119,,Oligo_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Oligo L2-6 OPALIN FTH1P3,Oligo L2-6 OPALIN FTH1P3,RNAseq 120,CS201912131_120,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Oligo L5-6 OPALIN LDLRAP1,Oligo L5-6 OPALIN LDLRAP1,RNAseq 121,CS201912131_121,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Astro L1-6 FGFR3 AQP1,Astro L1-6 FGFR3 AQP1,RNAseq 122,CS201912131_122,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Astro L1 FGFR3 SERPINI2,Astro L1 FGFR3 SERPINI2,RNAseq 123,CS201912131_123,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Astro L1-6 FGFR3 PLCG1,Astro L1-6 FGFR3 PLCG1,RNAseq 124,CS201912131_124,,Astro_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,Cell Type +Endo L2-5 NOSTRIN SRGN,Endo L2-5 NOSTRIN SRGN,RNAseq 125,CS201912131_125,Endothelial,Endo,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,"Cell Type,Subclass" +VLMC L1-5 PDGFRA COLEC12,VLMC L1-5 PDGFRA COLEC12,RNAseq 126,CS201912131_126,VLMC,VLMC,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,"Cell Type,Subclass" +Micro L1-6 TYROBP CD74,Micro L1-6 TYROBP CD74,RNAseq 127,CS201912131_127,Microglia-PVM,Microglia/PVM,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,,"Cell Type,Subclass" +Lamp5,Lamp5,"RNAseq 001-008, 014-015",CS201912131_128,Lamp5,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_1|CS201912131_2|CS201912131_3|CS201912131_4|CS201912131_5|CS201912131_6|CS201912131_7|CS201912131_8|CS201912131_14|CS201912131_15,Subclass +Sncg,Sncg,"RNAseq 009-013, 016-018",CS201912131_129,Sncg,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_9|CS201912131_10|CS201912131_11|CS201912131_12|CS201912131_13|CS201912131_16|CS201912131_17|CS201912131_18,Subclass +Vip,Vip,RNAseq 019-039,CS201912131_130,Vip,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_19|CS201912131_20|CS201912131_21|CS201912131_22|CS201912131_23|CS201912131_24|CS201912131_25|CS201912131_26|CS201912131_27|CS201912131_28|CS201912131_29|CS201912131_30|CS201912131_31|CS201912131_32|CS201912131_33|CS201912131_34|CS201912131_35|CS201912131_36|CS201912131_37|CS201912131_38|CS201912131_39,Subclass +Sst,Sst,RNAseq 041-058,CS201912131_131,Sst,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_41|CS201912131_42|CS201912131_43|CS201912131_44|CS201912131_45|CS201912131_46|CS201912131_47|CS201912131_48|CS201912131_49|CS201912131_50|CS201912131_51|CS201912131_52|CS201912131_53|CS201912131_54|CS201912131_55|CS201912131_56|CS201912131_57|CS201912131_58,Subclass +Pvalb,Pvalb,RNAseq 059-072,CS201912131_132,Pvalb,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_59|CS201912131_60|CS201912131_61|CS201912131_62|CS201912131_63|CS201912131_64|CS201912131_65|CS201912131_66|CS201912131_67|CS201912131_68|CS201912131_69|CS201912131_70|CS201912131_71|CS201912131_72,Subclass +L2/3 IT,L2/3 IT,RNAseq 073-080,CS201912131_133,L2/3 IT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_73|CS201912131_74|CS201912131_75|CS201912131_76|CS201912131_77|CS201912131_78|CS201912131_80|CS201912131_81,Subclass +L5 IT,L5 IT,RNAseq 081-092,CS201912131_134,L5 IT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_82|CS201912131_83|CS201912131_84|CS201912131_85|CS201912131_86|CS201912131_87|CS201912131_88|CS201912131_89|CS201912131_90|CS201912131_91|CS201912131_92|CS201912131_93,Subclass +L6 IT,L6 IT,RNAseq 093-095,CS201912131_135,L6 IT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_94|CS201912131_95|CS201912131_96,Subclass +L6 CT,L6 CT,RNAseq 097-102,CS201912131_136,L6 CT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_98|CS201912131_99|CS201912131_100|CS201912131_101|CS201912131_102|CS201912131_103,Subclass +L6b,L6b,RNAseq 103-108,CS201912131_137,L6b,L6b,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_104|CS201912131_105|CS201912131_106|CS201912131_107|CS201912131_108|CS201912131_109,Subclass +L5 ET,L5 ET,RNAseq 109-111,CS201912131_138,L5 ET,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_110|CS201912131_111|CS201912131_112,Subclass +L5/6 NP,L5/6 NP,RNAseq 112-116,CS201912131_139,L5/6 NP,L5/6 NP,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_113|CS201912131_114|CS201912131_115|CS201912131_116|CS201912131_117,Subclass +Oligo,Oligo,"RNAseq 117, 119-121",CS201912131_140,Oligodendrocyte,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_79|CS201912131_119|CS201912131_120|CS201912131_121,Subclass +Astro,Astro,RNAseq 122-124,CS201912131_142,Astrocyte,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_122|CS201912131_123|CS201912131_124,Subclass +CGE/PoA,CGE/PoA,RNAseq 001-039,CS201912131_143,CGE/PoA,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_1|CS201912131_2|CS201912131_3|CS201912131_4|CS201912131_5|CS201912131_6|CS201912131_7|CS201912131_8|CS201912131_9|CS201912131_10|CS201912131_11|CS201912131_12|CS201912131_13|CS201912131_14|CS201912131_15|CS201912131_16|CS201912131_17|CS201912131_18|CS201912131_19|CS201912131_20|CS201912131_21|CS201912131_22|CS201912131_23|CS201912131_24|CS201912131_25|CS201912131_26|CS201912131_27|CS201912131_28|CS201912131_29|CS201912131_30|CS201912131_31|CS201912131_32|CS201912131_33|CS201912131_34|CS201912131_35|CS201912131_36|CS201912131_37|CS201912131_38|CS201912131_39,No +MGE,MGE,RNAseq 040-072,CS201912131_144,MGE,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_40|CS201912131_41|CS201912131_42|CS201912131_43|CS201912131_44|CS201912131_45|CS201912131_46|CS201912131_47|CS201912131_48|CS201912131_49|CS201912131_50|CS201912131_51|CS201912131_52|CS201912131_53|CS201912131_54|CS201912131_55|CS201912131_56|CS201912131_57|CS201912131_58|CS201912131_59|CS201912131_60|CS201912131_61|CS201912131_62|CS201912131_63|CS201912131_64|CS201912131_65|CS201912131_66|CS201912131_67|CS201912131_68|CS201912131_69|CS201912131_70|CS201912131_71|CS201912131_72,No +IT projecting,IT projecting,RNAseq 073-096,CS201912131_145,IT projecting,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_73|CS201912131_74|CS201912131_75|CS201912131_76|CS201912131_77|CS201912131_78|CS201912131_80|CS201912131_81|CS201912131_82|CS201912131_83|CS201912131_84|CS201912131_85|CS201912131_86|CS201912131_87|CS201912131_88|CS201912131_89|CS201912131_90|CS201912131_91|CS201912131_92|CS201912131_93|CS201912131_94|CS201912131_95|CS201912131_96|CS201912131_97,No +Non-IT projecting,Non-IT projecting,RNAseq 097-116,CS201912131_146,Non-IT projecting,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_98|CS201912131_99|CS201912131_100|CS201912131_101|CS201912131_102|CS201912131_103|CS201912131_104|CS201912131_105|CS201912131_106|CS201912131_107|CS201912131_108|CS201912131_109|CS201912131_110|CS201912131_111|CS201912131_112|CS201912131_113|CS201912131_114|CS201912131_115|CS201912131_116|CS201912131_117,No +Oligo-OPC,Oligo-OPC,RNAseq 116-120,CS201912131_147,Oligodendrocyte-OPC,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_79|CS201912131_117|CS201912131_118|CS201912131_119|CS201912131_120,No +Other NN,Other NN,RNAseq 125-127,CS201912131_148,Non-neural,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_125|CS201912131_126|CS201912131_127,Class +GABAergic,GABAergic,RNAseq 001-072,CS201912131_149,Neuronal: GABAergic,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_1|CS201912131_2|CS201912131_3|CS201912131_4|CS201912131_5|CS201912131_6|CS201912131_7|CS201912131_8|CS201912131_9|CS201912131_10|CS201912131_11|CS201912131_12|CS201912131_13|CS201912131_14|CS201912131_15|CS201912131_16|CS201912131_17|CS201912131_18|CS201912131_19|CS201912131_20|CS201912131_21|CS201912131_22|CS201912131_23|CS201912131_24|CS201912131_25|CS201912131_26|CS201912131_27|CS201912131_28|CS201912131_29|CS201912131_30|CS201912131_31|CS201912131_32|CS201912131_33|CS201912131_34|CS201912131_35|CS201912131_36|CS201912131_37|CS201912131_38|CS201912131_39|CS201912131_40|CS201912131_41|CS201912131_42|CS201912131_43|CS201912131_44|CS201912131_45|CS201912131_46|CS201912131_47|CS201912131_48|CS201912131_49|CS201912131_50|CS201912131_51|CS201912131_52|CS201912131_53|CS201912131_54|CS201912131_55|CS201912131_56|CS201912131_57|CS201912131_58|CS201912131_59|CS201912131_60|CS201912131_61|CS201912131_62|CS201912131_63|CS201912131_64|CS201912131_65|CS201912131_66|CS201912131_67|CS201912131_68|CS201912131_69|CS201912131_70|CS201912131_71|CS201912131_72,Class +Glutamatergic,Glutamatergic,RNAseq 073-116,CS201912131_150,Neuronal: Glutamatergic,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_73|CS201912131_74|CS201912131_75|CS201912131_76|CS201912131_77|CS201912131_78|CS201912131_80|CS201912131_81|CS201912131_82|CS201912131_83|CS201912131_84|CS201912131_85|CS201912131_86|CS201912131_87|CS201912131_88|CS201912131_89|CS201912131_90|CS201912131_91|CS201912131_92|CS201912131_93|CS201912131_94|CS201912131_95|CS201912131_96|CS201912131_97|CS201912131_98|CS201912131_99|CS201912131_100|CS201912131_101|CS201912131_102|CS201912131_103|CS201912131_104|CS201912131_105|CS201912131_106|CS201912131_107|CS201912131_108|CS201912131_109|CS201912131_110|CS201912131_111|CS201912131_112|CS201912131_113|CS201912131_114|CS201912131_115|CS201912131_116|CS201912131_117,Class +Non-Neuronal,Non-Neuronal,RNAseq 117-124,CS201912131_151,Non-neuronal,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_79|CS201912131_118|CS201912131_119|CS201912131_120|CS201912131_121|CS201912131_122|CS201912131_123|CS201912131_124,Class +Lamp5_C2,Lamp5_C2,RNAseq 002-004,CS201912131_152,,Lamp5_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_2|CS201912131_3|CS201912131_4,No +Lamp5_C3,Lamp5_C3,RNAseq 005-006,CS201912131_153,Lamp5 Lhx6,Lamp5_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_5|CS201912131_6,No +Lamp5_C4,Lamp5_C4,RNAseq 007-008,CS201912131_154,,Lamp5_4,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_7|CS201912131_8,No +Sncg_C1,Sncg_C1,RNAseq 009-010,CS201912131_155,,Sncg_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_9|CS201912131_10,No +Sncg_C3,Sncg_C3,RNAseq 012-013,CS201912131_156,,Sncg_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_12|CS201912131_13,No +Lamp5_C5,Lamp5_C5,RNAseq 014-015,CS201912131_157,,Lamp5_5,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_14|CS201912131_15,No +Sncg_C4,Sncg_C4,RNAseq 016-018,CS201912131_158,,Sncg_4,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_16|CS201912131_17|CS201912131_18,No +Vip_C1,Vip_C1,RNAseq 019-021,CS201912131_159,,Vip_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_19|CS201912131_20|CS201912131_21,No +Vip_C2,Vip_C2,"RNAseq 022-028, 039",CS201912131_160,,Vip_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_22|CS201912131_23|CS201912131_24|CS201912131_25|CS201912131_26|CS201912131_27|CS201912131_28|CS201912131_39,No +Vip_C3,Vip_C3,RNAseq 029-033,CS201912131_161,,Vip_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_29|CS201912131_30|CS201912131_31|CS201912131_32|CS201912131_33,No +Vip_C4,Vip_C4,RNAseq 034-038,CS201912131_162,,Vip_4,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_34|CS201912131_35|CS201912131_36|CS201912131_37|CS201912131_38,No +Sst_C1,Sst_C1,RNAseq 041-042,CS201912131_163,,Sst_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_41|CS201912131_42,No +Sst_C2,Sst_C2,RNAseq 043-045,CS201912131_164,,Sst_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_43|CS201912131_44|CS201912131_45,No +Sst_C3,Sst_C3,"RNAseq 046-047, 050-052",CS201912131_165,,Sst_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_46|CS201912131_47|CS201912131_50|CS201912131_51|CS201912131_52,No +Sst_C4,Sst_C4,RNAseq 048-049,CS201912131_166,,Sst_4,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_48|CS201912131_49,No +Sst_C5,Sst_C5,RNAseq 053-054,CS201912131_167,,Sst_5,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_53|CS201912131_54,No +Sst_C6,Sst_C6,RNAseq 055-057,CS201912131_168,,Sst_6,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_55|CS201912131_56|CS201912131_57,No +Pvalb_C1,Pvalb_C1,RNAseq 059-068,CS201912131_169,,Pvalb_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_59|CS201912131_60|CS201912131_61|CS201912131_62|CS201912131_63|CS201912131_64|CS201912131_65|CS201912131_66|CS201912131_67|CS201912131_68,No +Pvalb_C2,Pvalb_C2,RNAseq 069-071,CS201912131_170,,Pvalb_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_69|CS201912131_70|CS201912131_71,No +L2/3 IT(i),L2/3 IT(i),RNAseq 073-078,CS201912131_171,,L2/3 IT,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_73|CS201912131_74|CS201912131_75|CS201912131_76|CS201912131_77|CS201912131_78,No +L5 IT_C1,L5 IT_C1,RNAseq 079-086,CS201912131_172,,L5 IT_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_80|CS201912131_81|CS201912131_82|CS201912131_83|CS201912131_84|CS201912131_85|CS201912131_86|CS201912131_87,No +L5 IT_C2,L5 IT_C2,"RNAseq 087, 089-090",CS201912131_173,,L5 IT_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_88|CS201912131_90|CS201912131_91,No +L6 IT_C2,L6 IT_C2,"RNAseq 088, 095",CS201912131_174,,L6 IT_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_89|CS201912131_96,No +L5 IT_C3,L5 IT_C3,RNAseq 091-092,CS201912131_175,,L5 IT_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_92|CS201912131_93,No +L6 IT_C1,L6 IT_C1,RNAseq 093-094,CS201912131_176,,L6 IT_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_94|CS201912131_95,No +L6 CT_C1,L6 CT_C1,"RNAseq 097-099, 101-102",CS201912131_177,,L6 CT_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_98|CS201912131_99|CS201912131_100|CS201912131_102|CS201912131_103,No +L5 ET_C1,L5 ET_C1,RNAseq 109-110,CS201912131_178,,L5 ET_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_110|CS201912131_111,No +Oligo_C2,Oligo_C2,RNAseq 120-121,CS201912131_179,,Oligo_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_120|CS201912131_121,No +Astro_C1,Astro_C1,RNAseq 122-123,CS201912131_180,,Astro_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_122|CS201912131_123,No +All cells,All cells,RNAseq 001-127,CS201912131_181,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912131,Human,RNAseq,CS201912131_1|CS201912131_2|CS201912131_3|CS201912131_4|CS201912131_5|CS201912131_6|CS201912131_7|CS201912131_8|CS201912131_9|CS201912131_10|CS201912131_11|CS201912131_12|CS201912131_13|CS201912131_14|CS201912131_15|CS201912131_16|CS201912131_17|CS201912131_18|CS201912131_19|CS201912131_20|CS201912131_21|CS201912131_22|CS201912131_23|CS201912131_24|CS201912131_25|CS201912131_26|CS201912131_27|CS201912131_28|CS201912131_29|CS201912131_30|CS201912131_31|CS201912131_32|CS201912131_33|CS201912131_34|CS201912131_35|CS201912131_36|CS201912131_37|CS201912131_38|CS201912131_39|CS201912131_40|CS201912131_41|CS201912131_42|CS201912131_43|CS201912131_44|CS201912131_45|CS201912131_46|CS201912131_47|CS201912131_48|CS201912131_49|CS201912131_50|CS201912131_51|CS201912131_52|CS201912131_53|CS201912131_54|CS201912131_55|CS201912131_56|CS201912131_57|CS201912131_58|CS201912131_59|CS201912131_60|CS201912131_61|CS201912131_62|CS201912131_63|CS201912131_64|CS201912131_65|CS201912131_66|CS201912131_67|CS201912131_68|CS201912131_69|CS201912131_70|CS201912131_71|CS201912131_72|CS201912131_73|CS201912131_74|CS201912131_75|CS201912131_76|CS201912131_77|CS201912131_78|CS201912131_79|CS201912131_80|CS201912131_81|CS201912131_82|CS201912131_83|CS201912131_84|CS201912131_85|CS201912131_86|CS201912131_87|CS201912131_88|CS201912131_89|CS201912131_90|CS201912131_91|CS201912131_92|CS201912131_93|CS201912131_94|CS201912131_95|CS201912131_96|CS201912131_97|CS201912131_98|CS201912131_99|CS201912131_100|CS201912131_101|CS201912131_102|CS201912131_103|CS201912131_104|CS201912131_105|CS201912131_106|CS201912131_107|CS201912131_108|CS201912131_109|CS201912131_110|CS201912131_111|CS201912131_112|CS201912131_113|CS201912131_114|CS201912131_115|CS201912131_116|CS201912131_117|CS201912131_118|CS201912131_119|CS201912131_120|CS201912131_121|CS201912131_122|CS201912131_123|CS201912131_124|CS201912131_125|CS201912131_126|CS201912131_127,No \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN201912132.csv b/src/dendrograms/nomenclature_table_CCN201912132.csv index aa63836e..1eeb17c8 100644 --- a/src/dendrograms/nomenclature_table_CCN201912132.csv +++ b/src/dendrograms/nomenclature_table_CCN201912132.csv @@ -1,136 +1,136 @@ -cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions -Inh SST NPY,Inh SST NPY,RNAseq 01,CS201912132_1,Sst Chodl,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh LAMP5 COL5A2,Inh LAMP5 COL5A2,RNAseq 02,CS201912132_2,,Lamp5_5,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh LAMP5 TOX2,Inh LAMP5 TOX2,RNAseq 03,CS201912132_3,,Lamp5_1,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh LAMP5 TRPC6,Inh LAMP5 TRPC6,RNAseq 04,CS201912132_4,Lamp5 Lhx6,Lamp5_3,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh LAMP5 WWP1,Inh LAMP5 WWP1,RNAseq 05,CS201912132_5,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh LAMP5 LOC108591196,Inh LAMP5 LOC108591196,RNAseq 06,CS201912132_6,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh PAX6 HMBOX1,Inh PAX6 HMBOX1,RNAseq 07,CS201912132_7,,Lamp5_4,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh SNCG PLPPR1,Inh SNCG PLPPR1,RNAseq 08,CS201912132_8,,Sncg_2,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh PAX6 ANKRD6,Inh PAX6 ANKRD6,RNAseq 09,CS201912132_9,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh VIP CYP19A1,Inh VIP CYP19A1,RNAseq 10,CS201912132_10,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh SNCG CNTN4,Inh SNCG CNTN4,RNAseq 11,CS201912132_11,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh PAX6 CDH4,Inh PAX6 CDH4,RNAseq 12,CS201912132_12,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh GAD1 PCP4,Inh GAD1 PCP4,RNAseq 13,CS201912132_13,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh GAD1 LOC108589948,Inh GAD1 LOC108589948,RNAseq 14,CS201912132_14,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh VIP THSD7B,Inh VIP THSD7B,RNAseq 15,CS201912132_15,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh VIP LOC100397259,Inh VIP LOC100397259,RNAseq 16,CS201912132_16,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh GAD1 NPSR1,Inh GAD1 NPSR1,RNAseq 17,CS201912132_17,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh SNCG LOC108587895,Inh SNCG LOC108587895,RNAseq 18,CS201912132_18,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh VIP LOC108589153,Inh VIP LOC108589153,RNAseq 19,CS201912132_19,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh VIP FIGN,Inh VIP FIGN,RNAseq 20,CS201912132_20,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh VIP GPR149,Inh VIP GPR149,RNAseq 21,CS201912132_21,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh VIP LOC108588071,Inh VIP LOC108588071,RNAseq 22,CS201912132_22,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh VIP VAT1L,Inh VIP VAT1L,RNAseq 23,CS201912132_23,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh VIP CIT,Inh VIP CIT,RNAseq 24,CS201912132_24,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh VIP LOC108588539,Inh VIP LOC108588539,RNAseq 25,CS201912132_25,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh PAX6 MEIS2,Inh PAX6 MEIS2,RNAseq 26,CS201912132_26,Meis2,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh SST LOC108589054,Inh SST LOC108589054,RNAseq 27,CS201912132_27,,Sst_5,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh SST LOC108588801,Inh SST LOC108588801,RNAseq 28,CS201912132_28,,Sst_6,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh SST LOC103788138,Inh SST LOC103788138,RNAseq 29,CS201912132_29,,Sst_7,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh SST MPP5,Inh SST MPP5,RNAseq 30,CS201912132_30,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh SST KIRREL3,Inh SST KIRREL3,RNAseq 31,CS201912132_31,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh SST LOC103788660,Inh SST LOC103788660,RNAseq 32,CS201912132_32,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh SST CBLN4,Inh SST CBLN4,RNAseq 33,CS201912132_33,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh SST ABI3BP,Inh SST ABI3BP,RNAseq 34,CS201912132_34,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh SST TMEFF2,Inh SST TMEFF2,RNAseq 35,CS201912132_35,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh SST P4HA1,Inh SST P4HA1,RNAseq 36,CS201912132_36,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh SST LTBP1,Inh SST LTBP1,RNAseq 37,CS201912132_37,,Sst_4,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh SST AIM1,Inh SST AIM1,RNAseq 38,CS201912132_38,,Sst_1,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh SST VAPA,Inh SST VAPA,RNAseq 39,CS201912132_39,,Sst_2,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh SST PCSK5,Inh SST PCSK5,RNAseq 40,CS201912132_40,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh PVALB OTOGL,Inh PVALB OTOGL,RNAseq 41,CS201912132_41,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh PVALB LOC103790362,Inh PVALB LOC103790362,RNAseq 42,CS201912132_42,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh PVALB OSBP2,Inh PVALB OSBP2,RNAseq 43,CS201912132_43,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh PVALB LOC103789439,Inh PVALB LOC103789439,RNAseq 44,CS201912132_44,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh PVALB GSTK1,Inh PVALB GSTK1,RNAseq 45,CS201912132_45,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh PVALB C8H7orf62,Inh PVALB C8H7orf62,RNAseq 46,CS201912132_46,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh PVALB SST LRRC6,Inh PVALB SST LRRC6,RNAseq 47,CS201912132_47,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh PVALB ADAMTS3,Inh PVALB ADAMTS3,RNAseq 48,CS201912132_48,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh PVALB SST EYS,Inh PVALB SST EYS,RNAseq 49,CS201912132_49,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh PVALB PCDH19,Inh PVALB PCDH19,RNAseq 50,CS201912132_50,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh PVALB KLHL29,Inh PVALB KLHL29,RNAseq 51,CS201912132_51,,Pvalb_2,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Inh PVALB FAM19A4,Inh PVALB FAM19A4,RNAseq 52,CS201912132_52,Chandelier,Chandelier cell,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Exc THEMIS ANO3,Exc THEMIS ANO3,RNAseq 53,CS201912132_53,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Exc RORB LOC108588466,Exc RORB LOC108588466,RNAseq 54,CS201912132_54,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Exc RORB SERPINE2,Exc RORB SERPINE2,RNAseq 55,CS201912132_55,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Exc RORB NDST3,Exc RORB NDST3,RNAseq 56,CS201912132_56,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Exc RORB KNL1,Exc RORB KNL1,RNAseq 57,CS201912132_57,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Exc RORB CAV3,Exc RORB CAV3,RNAseq 58,CS201912132_58,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Exc THEMIS KCTD16,Exc THEMIS KCTD16,RNAseq 59,CS201912132_59,,L6 IT_2,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Exc THEMIS COBL,Exc THEMIS COBL,RNAseq 60,CS201912132_60,,L6 IT_1,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Exc RORB LOC108593203,Exc RORB LOC108593203,RNAseq 61,CS201912132_61,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Exc RORB ANKRD27,Exc RORB ANKRD27,RNAseq 62,CS201912132_62,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Exc RORB ACTA2,Exc RORB ACTA2,RNAseq 63,CS201912132_63,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Exc RORB USH1C,Exc RORB USH1C,RNAseq 64,CS201912132_64,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Exc RORB SLC38A11,Exc RORB SLC38A11,RNAseq 65,CS201912132_65,,L5 IT_3,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Exc RORB PPA2,Exc RORB PPA2,RNAseq 66,CS201912132_66,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Exc RORB CHGA,Exc RORB CHGA,RNAseq 67,CS201912132_67,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Exc RORB HACL1,Exc RORB HACL1,RNAseq 68,CS201912132_68,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Oligo SLC1A3 LOC103793418,Oligo SLC1A3 LOC103793418,RNAseq 77,CS201912132_69,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Exc THEMIS ARL13B,Exc THEMIS ARL13B,RNAseq 69,CS201912132_70,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Exc FEZF2 PIEZO2,Exc FEZF2 PIEZO2,RNAseq 70,CS201912132_71,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Exc FEZF2 PDZRN4,Exc FEZF2 PDZRN4,RNAseq 71,CS201912132_72,,L5 ET_2,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Exc FEZF2 RGS4,Exc FEZF2 RGS4,RNAseq 72,CS201912132_73,,L6 CT_1,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Exc FEZF2 NRP1,Exc FEZF2 NRP1,RNAseq 73,CS201912132_74,,L6 CT_2,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Exc FEZF2 ARSJ,Exc FEZF2 ARSJ,RNAseq 74,CS201912132_75,L6b,L6b,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Exc THEMIS NTNG2,Exc THEMIS NTNG2,RNAseq 75,CS201912132_76,L6 IT Car3,L6 IT_3,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Exc FEZF2 CRYM,Exc FEZF2 CRYM,RNAseq 76,CS201912132_77,L5/6 NP,L5/6 NP,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -OPC PDGFRA VCAN,OPC PDGFRA VCAN,RNAseq 78,CS201912132_78,OPC,OPC,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Astro FGFR3 EPHB1,Astro FGFR3 EPHB1,RNAseq 79,CS201912132_79,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Astro FGFR3 NWD1,Astro FGFR3 NWD1,RNAseq 80,CS201912132_80,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Astro FGFR3 RCN2,Astro FGFR3 RCN2,RNAseq 81,CS201912132_81,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Astro FGFR3 GFAP,Astro FGFR3 GFAP,RNAseq 82,CS201912132_82,,Astro_1,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Oligo OPALIN LOC103790018,Oligo OPALIN LOC103790018,RNAseq 83,CS201912132_83,,Oligo_2,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Oligo OPALIN MOBP,Oligo OPALIN MOBP,RNAseq 84,CS201912132_84,,Oligo_1,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Endo NOSTRIN IL1R1,Endo NOSTRIN IL1R1,RNAseq 85,CS201912132_85,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Endo NOSTRIN CXCL12,Endo NOSTRIN CXCL12,RNAseq 86,CS201912132_86,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Glia SLC1A3 FBLN5,Glia SLC1A3 FBLN5,RNAseq 87,CS201912132_87,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Peri SLC1A3 CHST3,Peri SLC1A3 CHST3,RNAseq 88,CS201912132_88,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Peri SLC1A3 EPSTI1,Peri SLC1A3 EPSTI1,RNAseq 89,CS201912132_89,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -VLMC PDGFRA C7,VLMC PDGFRA C7,RNAseq 90,CS201912132_90,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -VLMC SLC1A3 CEMIP,VLMC SLC1A3 CEMIP,RNAseq 91,CS201912132_91,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -VLMC SLC1A3 SLC13A3,VLMC SLC1A3 SLC13A3,RNAseq 92,CS201912132_92,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -VLMC SLC1A3 SLC47A1,VLMC SLC1A3 SLC47A1,RNAseq 93,CS201912132_93,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Micro TYROBP LOC103788313,Micro TYROBP LOC103788313,RNAseq 94,CS201912132_94,Microglia-PVM,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq, -Lamp5,Lamp5,RNAseq 02-07,CS201912132_95,Lamp5,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_2|CS201912132_3|CS201912132_4|CS201912132_5|CS201912132_6|CS201912132_7 -Sncg,Sncg,RNAseq 08-14,CS201912132_96,Sncg,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_8|CS201912132_9|CS201912132_10|CS201912132_11|CS201912132_12|CS201912132_13|CS201912132_14 -Vip,Vip,RNAseq 15-25,CS201912132_97,Vip,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_15|CS201912132_16|CS201912132_17|CS201912132_18|CS201912132_19|CS201912132_20|CS201912132_21|CS201912132_22|CS201912132_23|CS201912132_24|CS201912132_25 -Sst,Sst,"RNAseq 27-40, 47",CS201912132_98,Sst,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_27|CS201912132_28|CS201912132_29|CS201912132_30|CS201912132_31|CS201912132_32|CS201912132_33|CS201912132_34|CS201912132_35|CS201912132_36|CS201912132_37|CS201912132_38|CS201912132_39|CS201912132_40|CS201912132_47 -Pvalb,Pvalb,"RNAseq 41-46, 48-52",CS201912132_99,Pvalb,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_41|CS201912132_42|CS201912132_43|CS201912132_44|CS201912132_45|CS201912132_46|CS201912132_48|CS201912132_49|CS201912132_50|CS201912132_51|CS201912132_52 -L2/3 IT,L2/3 IT,RNAseq 53-56,CS201912132_100,L2/3 IT,L2/3 IT,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_53|CS201912132_54|CS201912132_55|CS201912132_56 -L5 IT,L5 IT,"RNAseq 57-58, 61-68",CS201912132_101,L5 IT,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_57|CS201912132_58|CS201912132_61|CS201912132_62|CS201912132_63|CS201912132_64|CS201912132_65|CS201912132_66|CS201912132_67|CS201912132_68 -L6 IT,L6 IT,RNAseq 59-60,CS201912132_102,L6 IT,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_59|CS201912132_60 -L5 ET,L5 ET,RNAseq 69-71,CS201912132_103,L5 ET,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_70|CS201912132_71|CS201912132_72 -L6 CT,L6 CT,RNAseq 72-73,CS201912132_104,L6 CT,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_73|CS201912132_74 -Oligo,Oligo,"RNAseq 77, 83-84",CS201912132_105,Oligodendrocyte,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_69|CS201912132_83|CS201912132_84 -Astro,Astro,RNAseq 79-82,CS201912132_106,Astrocyte,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_79|CS201912132_80|CS201912132_81|CS201912132_82 -Endo,Endo,RNAseq 85-87,CS201912132_107,Endothelial,Endo,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_85|CS201912132_86|CS201912132_87 -Peri,Peri,RNAseq 88-89,CS201912132_108,Pericyte,Peri,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_88|CS201912132_89 -VLMC,VLMC,RNAseq 90-93,CS201912132_109,VLMC,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_90|CS201912132_91|CS201912132_92|CS201912132_93 -MGE,MGE,"RNAseq 01, 27-52",CS201912132_110,MGE,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_1|CS201912132_27|CS201912132_28|CS201912132_29|CS201912132_30|CS201912132_31|CS201912132_32|CS201912132_33|CS201912132_34|CS201912132_35|CS201912132_36|CS201912132_37|CS201912132_38|CS201912132_39|CS201912132_40|CS201912132_41|CS201912132_42|CS201912132_43|CS201912132_44|CS201912132_45|CS201912132_46|CS201912132_47|CS201912132_48|CS201912132_49|CS201912132_50|CS201912132_51|CS201912132_52 -CGE/PoA,CGE/PoA,RNAseq 02-26,CS201912132_111,CGE/PoA,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_2|CS201912132_3|CS201912132_4|CS201912132_5|CS201912132_6|CS201912132_7|CS201912132_8|CS201912132_9|CS201912132_10|CS201912132_11|CS201912132_12|CS201912132_13|CS201912132_14|CS201912132_15|CS201912132_16|CS201912132_17|CS201912132_18|CS201912132_19|CS201912132_20|CS201912132_21|CS201912132_22|CS201912132_23|CS201912132_24|CS201912132_25|CS201912132_26 -IT projecting,IT projecting,"RNAseq 53-68, 75",CS201912132_112,IT projecting,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_53|CS201912132_54|CS201912132_55|CS201912132_56|CS201912132_57|CS201912132_58|CS201912132_59|CS201912132_60|CS201912132_61|CS201912132_62|CS201912132_63|CS201912132_64|CS201912132_65|CS201912132_66|CS201912132_67|CS201912132_68|CS201912132_76 -Non-IT projecting,Non-IT projecting,RNAseq 69-76,CS201912132_113,Non-IT projecting,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_70|CS201912132_71|CS201912132_72|CS201912132_73|CS201912132_74|CS201912132_75|CS201912132_76|CS201912132_77 -Oligo-OPC,Oligo-OPC,"RNAseq 77-78, 83-84",CS201912132_114,Oligodendrocyte-OPC,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_69|CS201912132_78|CS201912132_83|CS201912132_84 -Other NN,Other NN,RNAseq 85-94,CS201912132_115,Non-neural,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_85|CS201912132_86|CS201912132_87|CS201912132_88|CS201912132_89|CS201912132_90|CS201912132_91|CS201912132_92|CS201912132_93|CS201912132_94 -GABAergic,GABAergic,RNAseq 01-52,CS201912132_116,Neuronal: GABAergic,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_1|CS201912132_2|CS201912132_3|CS201912132_4|CS201912132_5|CS201912132_6|CS201912132_7|CS201912132_8|CS201912132_9|CS201912132_10|CS201912132_11|CS201912132_12|CS201912132_13|CS201912132_14|CS201912132_15|CS201912132_16|CS201912132_17|CS201912132_18|CS201912132_19|CS201912132_20|CS201912132_21|CS201912132_22|CS201912132_23|CS201912132_24|CS201912132_25|CS201912132_26|CS201912132_27|CS201912132_28|CS201912132_29|CS201912132_30|CS201912132_31|CS201912132_32|CS201912132_33|CS201912132_34|CS201912132_35|CS201912132_36|CS201912132_37|CS201912132_38|CS201912132_39|CS201912132_40|CS201912132_41|CS201912132_42|CS201912132_43|CS201912132_44|CS201912132_45|CS201912132_46|CS201912132_47|CS201912132_48|CS201912132_49|CS201912132_50|CS201912132_51|CS201912132_52 -Glutamatergic,Glutamatergic,RNAseq 53-76,CS201912132_117,Neuronal: Glutamatergic,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_53|CS201912132_54|CS201912132_55|CS201912132_56|CS201912132_57|CS201912132_58|CS201912132_59|CS201912132_60|CS201912132_61|CS201912132_62|CS201912132_63|CS201912132_64|CS201912132_65|CS201912132_66|CS201912132_67|CS201912132_68|CS201912132_70|CS201912132_71|CS201912132_72|CS201912132_73|CS201912132_74|CS201912132_75|CS201912132_76|CS201912132_77 -Non-Neuronal,Non-Neuronal,RNAseq 77-84,CS201912132_118,Non-neuronal,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_69|CS201912132_78|CS201912132_79|CS201912132_80|CS201912132_81|CS201912132_82|CS201912132_83|CS201912132_84 -Sst Chodl(i),Sst Chodl(i),"RNAseq 01, 30",CS201912132_119,,Sst Chodl,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_1|CS201912132_30 -Lamp5_C2,Lamp5_C2,RNAseq 05-06,CS201912132_120,,Lamp5_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_5|CS201912132_6 -Sncg_C1,Sncg_C1,"RNAseq 09, 12",CS201912132_121,,Sncg_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_9|CS201912132_12 -Sncg_C3,Sncg_C3,RNAseq 10-11,CS201912132_122,,Sncg_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_10|CS201912132_11 -Sncg_C4,Sncg_C4,RNAseq 13-14,CS201912132_123,,Sncg_4,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_13|CS201912132_14 -Vip_C4,Vip_C4,"RNAseq 15, 25",CS201912132_124,,Vip_4,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_15|CS201912132_25 -Vip_C2,Vip_C2,"RNAseq 16-18, 24",CS201912132_125,,Vip_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_16|CS201912132_17|CS201912132_18|CS201912132_24 -Vip_C1,Vip_C1,RNAseq 19-20,CS201912132_126,,Vip_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_19|CS201912132_20 -Vip_C3,Vip_C3,RNAseq 21-23,CS201912132_127,,Vip_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_21|CS201912132_22|CS201912132_23 -Sst_C3,Sst_C3,"RNAseq 31-36, 40, 47",CS201912132_128,,Sst_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_31|CS201912132_32|CS201912132_33|CS201912132_34|CS201912132_35|CS201912132_36|CS201912132_40|CS201912132_47 -Pvalb_C1,Pvalb_C1,"RNAseq 41-46, 48-50",CS201912132_129,,Pvalb_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_41|CS201912132_42|CS201912132_43|CS201912132_44|CS201912132_45|CS201912132_46|CS201912132_48|CS201912132_49|CS201912132_50 -L5 IT_C1,L5 IT_C1,"RNAseq 57-58, 61-64",CS201912132_130,,L5 IT_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_57|CS201912132_58|CS201912132_61|CS201912132_62|CS201912132_63|CS201912132_64 -L5 IT_C2,L5 IT_C2,RNAseq 66-68,CS201912132_131,,L5 IT_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_66|CS201912132_67|CS201912132_68 -L5 ET_C1,L5 ET_C1,RNAseq 69-70,CS201912132_132,,L5 ET_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_70|CS201912132_71 -Astro_C2,Astro_C2,RNAseq 79-81,CS201912132_133,,Astro_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_79|CS201912132_80|CS201912132_81 -VLMC(i),VLMC(i),RNAseq 90-92,CS201912132_134,,VLMC,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_90|CS201912132_91|CS201912132_92 -,All cells,RNAseq 01-94,CS201912132_135,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_1|CS201912132_2|CS201912132_3|CS201912132_4|CS201912132_5|CS201912132_6|CS201912132_7|CS201912132_8|CS201912132_9|CS201912132_10|CS201912132_11|CS201912132_12|CS201912132_13|CS201912132_14|CS201912132_15|CS201912132_16|CS201912132_17|CS201912132_18|CS201912132_19|CS201912132_20|CS201912132_21|CS201912132_22|CS201912132_23|CS201912132_24|CS201912132_25|CS201912132_26|CS201912132_27|CS201912132_28|CS201912132_29|CS201912132_30|CS201912132_31|CS201912132_32|CS201912132_33|CS201912132_34|CS201912132_35|CS201912132_36|CS201912132_37|CS201912132_38|CS201912132_39|CS201912132_40|CS201912132_41|CS201912132_42|CS201912132_43|CS201912132_44|CS201912132_45|CS201912132_46|CS201912132_47|CS201912132_48|CS201912132_49|CS201912132_50|CS201912132_51|CS201912132_52|CS201912132_53|CS201912132_54|CS201912132_55|CS201912132_56|CS201912132_57|CS201912132_58|CS201912132_59|CS201912132_60|CS201912132_61|CS201912132_62|CS201912132_63|CS201912132_64|CS201912132_65|CS201912132_66|CS201912132_67|CS201912132_68|CS201912132_69|CS201912132_70|CS201912132_71|CS201912132_72|CS201912132_73|CS201912132_74|CS201912132_75|CS201912132_76|CS201912132_77|CS201912132_78|CS201912132_79|CS201912132_80|CS201912132_81|CS201912132_82|CS201912132_83|CS201912132_84|CS201912132_85|CS201912132_86|CS201912132_87|CS201912132_88|CS201912132_89|CS201912132_90|CS201912132_91|CS201912132_92|CS201912132_93|CS201912132_94 \ No newline at end of file +cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions,cell_type_card +Inh SST NPY,Inh SST NPY,RNAseq 01,CS201912132_1,Sst Chodl,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,"Cell Type,Subclass" +Inh LAMP5 COL5A2,Inh LAMP5 COL5A2,RNAseq 02,CS201912132_2,,Lamp5_5,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh LAMP5 TOX2,Inh LAMP5 TOX2,RNAseq 03,CS201912132_3,,Lamp5_1,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh LAMP5 TRPC6,Inh LAMP5 TRPC6,RNAseq 04,CS201912132_4,Lamp5 Lhx6,Lamp5_3,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh LAMP5 WWP1,Inh LAMP5 WWP1,RNAseq 05,CS201912132_5,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh LAMP5 LOC108591196,Inh LAMP5 LOC108591196,RNAseq 06,CS201912132_6,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh PAX6 HMBOX1,Inh PAX6 HMBOX1,RNAseq 07,CS201912132_7,,Lamp5_4,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh SNCG PLPPR1,Inh SNCG PLPPR1,RNAseq 08,CS201912132_8,,Sncg_2,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh PAX6 ANKRD6,Inh PAX6 ANKRD6,RNAseq 09,CS201912132_9,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh VIP CYP19A1,Inh VIP CYP19A1,RNAseq 10,CS201912132_10,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh SNCG CNTN4,Inh SNCG CNTN4,RNAseq 11,CS201912132_11,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh PAX6 CDH4,Inh PAX6 CDH4,RNAseq 12,CS201912132_12,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh GAD1 PCP4,Inh GAD1 PCP4,RNAseq 13,CS201912132_13,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh GAD1 LOC108589948,Inh GAD1 LOC108589948,RNAseq 14,CS201912132_14,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh VIP THSD7B,Inh VIP THSD7B,RNAseq 15,CS201912132_15,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh VIP LOC100397259,Inh VIP LOC100397259,RNAseq 16,CS201912132_16,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh GAD1 NPSR1,Inh GAD1 NPSR1,RNAseq 17,CS201912132_17,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh SNCG LOC108587895,Inh SNCG LOC108587895,RNAseq 18,CS201912132_18,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh VIP LOC108589153,Inh VIP LOC108589153,RNAseq 19,CS201912132_19,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh VIP FIGN,Inh VIP FIGN,RNAseq 20,CS201912132_20,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh VIP GPR149,Inh VIP GPR149,RNAseq 21,CS201912132_21,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh VIP LOC108588071,Inh VIP LOC108588071,RNAseq 22,CS201912132_22,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh VIP VAT1L,Inh VIP VAT1L,RNAseq 23,CS201912132_23,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh VIP CIT,Inh VIP CIT,RNAseq 24,CS201912132_24,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh VIP LOC108588539,Inh VIP LOC108588539,RNAseq 25,CS201912132_25,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh PAX6 MEIS2,Inh PAX6 MEIS2,RNAseq 26,CS201912132_26,Meis2,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,"Cell Type,Subclass" +Inh SST LOC108589054,Inh SST LOC108589054,RNAseq 27,CS201912132_27,,Sst_5,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh SST LOC108588801,Inh SST LOC108588801,RNAseq 28,CS201912132_28,,Sst_6,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh SST LOC103788138,Inh SST LOC103788138,RNAseq 29,CS201912132_29,,Sst_7,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh SST MPP5,Inh SST MPP5,RNAseq 30,CS201912132_30,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh SST KIRREL3,Inh SST KIRREL3,RNAseq 31,CS201912132_31,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh SST LOC103788660,Inh SST LOC103788660,RNAseq 32,CS201912132_32,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh SST CBLN4,Inh SST CBLN4,RNAseq 33,CS201912132_33,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh SST ABI3BP,Inh SST ABI3BP,RNAseq 34,CS201912132_34,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh SST TMEFF2,Inh SST TMEFF2,RNAseq 35,CS201912132_35,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh SST P4HA1,Inh SST P4HA1,RNAseq 36,CS201912132_36,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh SST LTBP1,Inh SST LTBP1,RNAseq 37,CS201912132_37,,Sst_4,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh SST AIM1,Inh SST AIM1,RNAseq 38,CS201912132_38,,Sst_1,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh SST VAPA,Inh SST VAPA,RNAseq 39,CS201912132_39,,Sst_2,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh SST PCSK5,Inh SST PCSK5,RNAseq 40,CS201912132_40,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh PVALB OTOGL,Inh PVALB OTOGL,RNAseq 41,CS201912132_41,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh PVALB LOC103790362,Inh PVALB LOC103790362,RNAseq 42,CS201912132_42,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh PVALB OSBP2,Inh PVALB OSBP2,RNAseq 43,CS201912132_43,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh PVALB LOC103789439,Inh PVALB LOC103789439,RNAseq 44,CS201912132_44,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh PVALB GSTK1,Inh PVALB GSTK1,RNAseq 45,CS201912132_45,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh PVALB C8H7orf62,Inh PVALB C8H7orf62,RNAseq 46,CS201912132_46,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh PVALB SST LRRC6,Inh PVALB SST LRRC6,RNAseq 47,CS201912132_47,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh PVALB ADAMTS3,Inh PVALB ADAMTS3,RNAseq 48,CS201912132_48,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh PVALB SST EYS,Inh PVALB SST EYS,RNAseq 49,CS201912132_49,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh PVALB PCDH19,Inh PVALB PCDH19,RNAseq 50,CS201912132_50,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh PVALB KLHL29,Inh PVALB KLHL29,RNAseq 51,CS201912132_51,,Pvalb_2,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Inh PVALB FAM19A4,Inh PVALB FAM19A4,RNAseq 52,CS201912132_52,Chandelier,Chandelier cell,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Exc THEMIS ANO3,Exc THEMIS ANO3,RNAseq 53,CS201912132_53,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Exc RORB LOC108588466,Exc RORB LOC108588466,RNAseq 54,CS201912132_54,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Exc RORB SERPINE2,Exc RORB SERPINE2,RNAseq 55,CS201912132_55,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Exc RORB NDST3,Exc RORB NDST3,RNAseq 56,CS201912132_56,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Exc RORB KNL1,Exc RORB KNL1,RNAseq 57,CS201912132_57,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Exc RORB CAV3,Exc RORB CAV3,RNAseq 58,CS201912132_58,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Exc THEMIS KCTD16,Exc THEMIS KCTD16,RNAseq 59,CS201912132_59,,L6 IT_2,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Exc THEMIS COBL,Exc THEMIS COBL,RNAseq 60,CS201912132_60,,L6 IT_1,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Exc RORB LOC108593203,Exc RORB LOC108593203,RNAseq 61,CS201912132_61,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Exc RORB ANKRD27,Exc RORB ANKRD27,RNAseq 62,CS201912132_62,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Exc RORB ACTA2,Exc RORB ACTA2,RNAseq 63,CS201912132_63,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Exc RORB USH1C,Exc RORB USH1C,RNAseq 64,CS201912132_64,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Exc RORB SLC38A11,Exc RORB SLC38A11,RNAseq 65,CS201912132_65,,L5 IT_3,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Exc RORB PPA2,Exc RORB PPA2,RNAseq 66,CS201912132_66,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Exc RORB CHGA,Exc RORB CHGA,RNAseq 67,CS201912132_67,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Exc RORB HACL1,Exc RORB HACL1,RNAseq 68,CS201912132_68,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Oligo SLC1A3 LOC103793418,Oligo SLC1A3 LOC103793418,RNAseq 77,CS201912132_69,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Exc THEMIS ARL13B,Exc THEMIS ARL13B,RNAseq 69,CS201912132_70,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Exc FEZF2 PIEZO2,Exc FEZF2 PIEZO2,RNAseq 70,CS201912132_71,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Exc FEZF2 PDZRN4,Exc FEZF2 PDZRN4,RNAseq 71,CS201912132_72,,L5 ET_2,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Exc FEZF2 RGS4,Exc FEZF2 RGS4,RNAseq 72,CS201912132_73,,L6 CT_1,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Exc FEZF2 NRP1,Exc FEZF2 NRP1,RNAseq 73,CS201912132_74,,L6 CT_2,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Exc FEZF2 ARSJ,Exc FEZF2 ARSJ,RNAseq 74,CS201912132_75,L6b,L6b,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,"Cell Type,Subclass" +Exc THEMIS NTNG2,Exc THEMIS NTNG2,RNAseq 75,CS201912132_76,L6 IT Car3,L6 IT_3,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,"Cell Type,Subclass" +Exc FEZF2 CRYM,Exc FEZF2 CRYM,RNAseq 76,CS201912132_77,L5/6 NP,L5/6 NP,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,"Cell Type,Subclass" +OPC PDGFRA VCAN,OPC PDGFRA VCAN,RNAseq 78,CS201912132_78,OPC,OPC,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,"Cell Type,Subclass" +Astro FGFR3 EPHB1,Astro FGFR3 EPHB1,RNAseq 79,CS201912132_79,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Astro FGFR3 NWD1,Astro FGFR3 NWD1,RNAseq 80,CS201912132_80,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Astro FGFR3 RCN2,Astro FGFR3 RCN2,RNAseq 81,CS201912132_81,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Astro FGFR3 GFAP,Astro FGFR3 GFAP,RNAseq 82,CS201912132_82,,Astro_1,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Oligo OPALIN LOC103790018,Oligo OPALIN LOC103790018,RNAseq 83,CS201912132_83,,Oligo_2,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Oligo OPALIN MOBP,Oligo OPALIN MOBP,RNAseq 84,CS201912132_84,,Oligo_1,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Endo NOSTRIN IL1R1,Endo NOSTRIN IL1R1,RNAseq 85,CS201912132_85,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Endo NOSTRIN CXCL12,Endo NOSTRIN CXCL12,RNAseq 86,CS201912132_86,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Glia SLC1A3 FBLN5,Glia SLC1A3 FBLN5,RNAseq 87,CS201912132_87,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Peri SLC1A3 CHST3,Peri SLC1A3 CHST3,RNAseq 88,CS201912132_88,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Peri SLC1A3 EPSTI1,Peri SLC1A3 EPSTI1,RNAseq 89,CS201912132_89,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +VLMC PDGFRA C7,VLMC PDGFRA C7,RNAseq 90,CS201912132_90,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +VLMC SLC1A3 CEMIP,VLMC SLC1A3 CEMIP,RNAseq 91,CS201912132_91,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +VLMC SLC1A3 SLC13A3,VLMC SLC1A3 SLC13A3,RNAseq 92,CS201912132_92,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +VLMC SLC1A3 SLC47A1,VLMC SLC1A3 SLC47A1,RNAseq 93,CS201912132_93,,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,Cell Type +Micro TYROBP LOC103788313,Micro TYROBP LOC103788313,RNAseq 94,CS201912132_94,Microglia-PVM,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,,"Cell Type,Subclass" +Lamp5,Lamp5,RNAseq 02-07,CS201912132_95,Lamp5,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_2|CS201912132_3|CS201912132_4|CS201912132_5|CS201912132_6|CS201912132_7,Subclass +Sncg,Sncg,RNAseq 08-14,CS201912132_96,Sncg,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_8|CS201912132_9|CS201912132_10|CS201912132_11|CS201912132_12|CS201912132_13|CS201912132_14,Subclass +Vip,Vip,RNAseq 15-25,CS201912132_97,Vip,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_15|CS201912132_16|CS201912132_17|CS201912132_18|CS201912132_19|CS201912132_20|CS201912132_21|CS201912132_22|CS201912132_23|CS201912132_24|CS201912132_25,Subclass +Sst,Sst,"RNAseq 27-40, 47",CS201912132_98,Sst,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_27|CS201912132_28|CS201912132_29|CS201912132_30|CS201912132_31|CS201912132_32|CS201912132_33|CS201912132_34|CS201912132_35|CS201912132_36|CS201912132_37|CS201912132_38|CS201912132_39|CS201912132_40|CS201912132_47,Subclass +Pvalb,Pvalb,"RNAseq 41-46, 48-52",CS201912132_99,Pvalb,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_41|CS201912132_42|CS201912132_43|CS201912132_44|CS201912132_45|CS201912132_46|CS201912132_48|CS201912132_49|CS201912132_50|CS201912132_51|CS201912132_52,Subclass +L2/3 IT,L2/3 IT,RNAseq 53-56,CS201912132_100,L2/3 IT,L2/3 IT,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_53|CS201912132_54|CS201912132_55|CS201912132_56,Subclass +L5 IT,L5 IT,"RNAseq 57-58, 61-68",CS201912132_101,L5 IT,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_57|CS201912132_58|CS201912132_61|CS201912132_62|CS201912132_63|CS201912132_64|CS201912132_65|CS201912132_66|CS201912132_67|CS201912132_68,Subclass +L6 IT,L6 IT,RNAseq 59-60,CS201912132_102,L6 IT,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_59|CS201912132_60,Subclass +L5 ET,L5 ET,RNAseq 69-71,CS201912132_103,L5 ET,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_70|CS201912132_71|CS201912132_72,Subclass +L6 CT,L6 CT,RNAseq 72-73,CS201912132_104,L6 CT,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_73|CS201912132_74,Subclass +Oligo,Oligo,"RNAseq 77, 83-84",CS201912132_105,Oligodendrocyte,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_69|CS201912132_83|CS201912132_84,Subclass +Astro,Astro,RNAseq 79-82,CS201912132_106,Astrocyte,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_79|CS201912132_80|CS201912132_81|CS201912132_82,Subclass +Endo,Endo,RNAseq 85-87,CS201912132_107,Endothelial,Endo,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_85|CS201912132_86|CS201912132_87,Subclass +Peri,Peri,RNAseq 88-89,CS201912132_108,Pericyte,Peri,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_88|CS201912132_89,Subclass +VLMC,VLMC,RNAseq 90-93,CS201912132_109,VLMC,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_90|CS201912132_91|CS201912132_92|CS201912132_93,Subclass +MGE,MGE,"RNAseq 01, 27-52",CS201912132_110,MGE,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_1|CS201912132_27|CS201912132_28|CS201912132_29|CS201912132_30|CS201912132_31|CS201912132_32|CS201912132_33|CS201912132_34|CS201912132_35|CS201912132_36|CS201912132_37|CS201912132_38|CS201912132_39|CS201912132_40|CS201912132_41|CS201912132_42|CS201912132_43|CS201912132_44|CS201912132_45|CS201912132_46|CS201912132_47|CS201912132_48|CS201912132_49|CS201912132_50|CS201912132_51|CS201912132_52,No +CGE/PoA,CGE/PoA,RNAseq 02-26,CS201912132_111,CGE/PoA,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_2|CS201912132_3|CS201912132_4|CS201912132_5|CS201912132_6|CS201912132_7|CS201912132_8|CS201912132_9|CS201912132_10|CS201912132_11|CS201912132_12|CS201912132_13|CS201912132_14|CS201912132_15|CS201912132_16|CS201912132_17|CS201912132_18|CS201912132_19|CS201912132_20|CS201912132_21|CS201912132_22|CS201912132_23|CS201912132_24|CS201912132_25|CS201912132_26,No +IT projecting,IT projecting,"RNAseq 53-68, 75",CS201912132_112,IT projecting,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_53|CS201912132_54|CS201912132_55|CS201912132_56|CS201912132_57|CS201912132_58|CS201912132_59|CS201912132_60|CS201912132_61|CS201912132_62|CS201912132_63|CS201912132_64|CS201912132_65|CS201912132_66|CS201912132_67|CS201912132_68|CS201912132_76,No +Non-IT projecting,Non-IT projecting,RNAseq 69-76,CS201912132_113,Non-IT projecting,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_70|CS201912132_71|CS201912132_72|CS201912132_73|CS201912132_74|CS201912132_75|CS201912132_76|CS201912132_77,No +Oligo-OPC,Oligo-OPC,"RNAseq 77-78, 83-84",CS201912132_114,Oligodendrocyte-OPC,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_69|CS201912132_78|CS201912132_83|CS201912132_84,No +Other NN,Other NN,RNAseq 85-94,CS201912132_115,Non-neural,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_85|CS201912132_86|CS201912132_87|CS201912132_88|CS201912132_89|CS201912132_90|CS201912132_91|CS201912132_92|CS201912132_93|CS201912132_94,Class +GABAergic,GABAergic,RNAseq 01-52,CS201912132_116,Neuronal: GABAergic,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_1|CS201912132_2|CS201912132_3|CS201912132_4|CS201912132_5|CS201912132_6|CS201912132_7|CS201912132_8|CS201912132_9|CS201912132_10|CS201912132_11|CS201912132_12|CS201912132_13|CS201912132_14|CS201912132_15|CS201912132_16|CS201912132_17|CS201912132_18|CS201912132_19|CS201912132_20|CS201912132_21|CS201912132_22|CS201912132_23|CS201912132_24|CS201912132_25|CS201912132_26|CS201912132_27|CS201912132_28|CS201912132_29|CS201912132_30|CS201912132_31|CS201912132_32|CS201912132_33|CS201912132_34|CS201912132_35|CS201912132_36|CS201912132_37|CS201912132_38|CS201912132_39|CS201912132_40|CS201912132_41|CS201912132_42|CS201912132_43|CS201912132_44|CS201912132_45|CS201912132_46|CS201912132_47|CS201912132_48|CS201912132_49|CS201912132_50|CS201912132_51|CS201912132_52,Class +Glutamatergic,Glutamatergic,RNAseq 53-76,CS201912132_117,Neuronal: Glutamatergic,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_53|CS201912132_54|CS201912132_55|CS201912132_56|CS201912132_57|CS201912132_58|CS201912132_59|CS201912132_60|CS201912132_61|CS201912132_62|CS201912132_63|CS201912132_64|CS201912132_65|CS201912132_66|CS201912132_67|CS201912132_68|CS201912132_70|CS201912132_71|CS201912132_72|CS201912132_73|CS201912132_74|CS201912132_75|CS201912132_76|CS201912132_77,Class +Non-Neuronal,Non-Neuronal,RNAseq 77-84,CS201912132_118,Non-neuronal,,Fenna Krienen,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_69|CS201912132_78|CS201912132_79|CS201912132_80|CS201912132_81|CS201912132_82|CS201912132_83|CS201912132_84,Class +Sst Chodl(i),Sst Chodl(i),"RNAseq 01, 30",CS201912132_119,,Sst Chodl,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_1|CS201912132_30,No +Lamp5_C2,Lamp5_C2,RNAseq 05-06,CS201912132_120,,Lamp5_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_5|CS201912132_6,No +Sncg_C1,Sncg_C1,"RNAseq 09, 12",CS201912132_121,,Sncg_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_9|CS201912132_12,No +Sncg_C3,Sncg_C3,RNAseq 10-11,CS201912132_122,,Sncg_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_10|CS201912132_11,No +Sncg_C4,Sncg_C4,RNAseq 13-14,CS201912132_123,,Sncg_4,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_13|CS201912132_14,No +Vip_C4,Vip_C4,"RNAseq 15, 25",CS201912132_124,,Vip_4,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_15|CS201912132_25,No +Vip_C2,Vip_C2,"RNAseq 16-18, 24",CS201912132_125,,Vip_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_16|CS201912132_17|CS201912132_18|CS201912132_24,No +Vip_C1,Vip_C1,RNAseq 19-20,CS201912132_126,,Vip_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_19|CS201912132_20,No +Vip_C3,Vip_C3,RNAseq 21-23,CS201912132_127,,Vip_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_21|CS201912132_22|CS201912132_23,No +Sst_C3,Sst_C3,"RNAseq 31-36, 40, 47",CS201912132_128,,Sst_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_31|CS201912132_32|CS201912132_33|CS201912132_34|CS201912132_35|CS201912132_36|CS201912132_40|CS201912132_47,No +Pvalb_C1,Pvalb_C1,"RNAseq 41-46, 48-50",CS201912132_129,,Pvalb_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_41|CS201912132_42|CS201912132_43|CS201912132_44|CS201912132_45|CS201912132_46|CS201912132_48|CS201912132_49|CS201912132_50,No +L5 IT_C1,L5 IT_C1,"RNAseq 57-58, 61-64",CS201912132_130,,L5 IT_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_57|CS201912132_58|CS201912132_61|CS201912132_62|CS201912132_63|CS201912132_64,No +L5 IT_C2,L5 IT_C2,RNAseq 66-68,CS201912132_131,,L5 IT_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_66|CS201912132_67|CS201912132_68,No +L5 ET_C1,L5 ET_C1,RNAseq 69-70,CS201912132_132,,L5 ET_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_70|CS201912132_71,No +Astro_C2,Astro_C2,RNAseq 79-81,CS201912132_133,,Astro_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_79|CS201912132_80|CS201912132_81,No +VLMC(i),VLMC(i),RNAseq 90-92,CS201912132_134,,VLMC,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_90|CS201912132_91|CS201912132_92,No +All cells,All cells,RNAseq 01-94,CS201912132_135,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN201912132,Marmoset,RNAseq,CS201912132_1|CS201912132_2|CS201912132_3|CS201912132_4|CS201912132_5|CS201912132_6|CS201912132_7|CS201912132_8|CS201912132_9|CS201912132_10|CS201912132_11|CS201912132_12|CS201912132_13|CS201912132_14|CS201912132_15|CS201912132_16|CS201912132_17|CS201912132_18|CS201912132_19|CS201912132_20|CS201912132_21|CS201912132_22|CS201912132_23|CS201912132_24|CS201912132_25|CS201912132_26|CS201912132_27|CS201912132_28|CS201912132_29|CS201912132_30|CS201912132_31|CS201912132_32|CS201912132_33|CS201912132_34|CS201912132_35|CS201912132_36|CS201912132_37|CS201912132_38|CS201912132_39|CS201912132_40|CS201912132_41|CS201912132_42|CS201912132_43|CS201912132_44|CS201912132_45|CS201912132_46|CS201912132_47|CS201912132_48|CS201912132_49|CS201912132_50|CS201912132_51|CS201912132_52|CS201912132_53|CS201912132_54|CS201912132_55|CS201912132_56|CS201912132_57|CS201912132_58|CS201912132_59|CS201912132_60|CS201912132_61|CS201912132_62|CS201912132_63|CS201912132_64|CS201912132_65|CS201912132_66|CS201912132_67|CS201912132_68|CS201912132_69|CS201912132_70|CS201912132_71|CS201912132_72|CS201912132_73|CS201912132_74|CS201912132_75|CS201912132_76|CS201912132_77|CS201912132_78|CS201912132_79|CS201912132_80|CS201912132_81|CS201912132_82|CS201912132_83|CS201912132_84|CS201912132_85|CS201912132_86|CS201912132_87|CS201912132_88|CS201912132_89|CS201912132_90|CS201912132_91|CS201912132_92|CS201912132_93|CS201912132_94,No \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202002011.csv b/src/dendrograms/nomenclature_table_CCN202002011.csv index f6f9d280..fd5197bb 100644 --- a/src/dendrograms/nomenclature_table_CCN202002011.csv +++ b/src/dendrograms/nomenclature_table_CCN202002011.csv @@ -1,111 +1,111 @@ -cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions -L2/3 IT (1),L2/3 IT (1),SCF 01,CS202002011_1,,SCF-ENS2-C4_1_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L2/3 IT (2),L2/3 IT (2),SCF 02,CS202002011_2,,SCF-ENS2-C4_1_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L2/3 IT (3),L2/3 IT (3),SCF 03,CS202002011_3,,SCF-ENS2-C4_2_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L2/3 IT (4),L2/3 IT (4),SCF 04,CS202002011_4,,SCF-ENS2-C4_2_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L2/3 IT (5),L2/3 IT (5),SCF 05,CS202002011_5,,SCF-ENS2-C4_2_3,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L4/5 IT (1),L4/5 IT (1),SCF 06,CS202002011_6,,SCF-ENS2-C1_1_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L4/5 IT (2),L4/5 IT (2),SCF 07,CS202002011_7,,SCF-ENS2-C1_2_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L4/5 IT (3),L4/5 IT (3),SCF 08,CS202002011_8,,SCF-ENS2-C1_2_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor 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14,CS202002011_14,,SCF-ENS2-C9_1_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L5 ET (2),L5 ET (2),SCF 15,CS202002011_15,,SCF-ENS2-C9_2_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L5 ET (3),L5 ET (3),SCF 16,CS202002011_16,,SCF-ENS2-C9_2_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L6 CT Cpa6 (1),L6 CT Cpa6 (1),SCF 17,CS202002011_17,,SCF-ENS2-C2_1_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L6 CT Cpa6 (2),L6 CT Cpa6 (2),SCF 18,CS202002011_18,,SCF-ENS2-C2_1_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L6 CT Cpa6 (3),L6 CT Cpa6 (3),SCF 19,CS202002011_19,,SCF-ENS2-C2_2_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor 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Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Pvalb Calb1,Pvalb Calb1,SCF 36,CS202002011_36,,SCF-ENS2-C5_1_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Pvalb Gabrg1,Pvalb Gabrg1,SCF 37,CS202002011_37,,SCF-ENS2-C5_4_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Pvalb Vipr2,Pvalb Vipr2,SCF 38,CS202002011_38,Chandelier,SCF-ENS2-C5_5_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Sst Myh8,Sst Myh8,SCF 39,CS202002011_39,,SCF-ENS2-C5_2_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Sst Crhr2 (1),Sst Crhr2 (1),SCF 40,CS202002011_40,,SCF-ENS2-C5_2_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Sst Crhr2 (2),Sst Crhr2 (2),SCF 41,CS202002011_41,,SCF-ENS2-C5_2_3,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Sst Calb2,Sst Calb2,SCF 42,CS202002011_42,,SCF-ENS2-C5_3_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Sst Hspe,Sst Hspe,SCF 43,CS202002011_43,,SCF-ENS2-C5_3_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Sst Chodl,Sst Chodl,SCF 44,CS202002011_44,Sst Chodl,SCF-ENS2-C10_1_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Lamp5 Slc35d3,Lamp5 Slc35d3,SCF 45,CS202002011_45,,SCF-ENS2-C6_2_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Lamp5 Pdlim5,Lamp5 Pdlim5,SCF 46,CS202002011_46,,SCF-ENS2-C6_4_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Lamp5 Pax6,Lamp5 Pax6,SCF 47,CS202002011_47,,SCF-ENS2-C6_4_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Lamp5 Lhx6,Lamp5 Lhx6,SCF 48,CS202002011_48,Lamp5 Lhx6,SCF-ENS2-C6_6_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Sncg Col14a1,Sncg Col14a1,SCF 49,CS202002011_49,,SCF-ENS2-C6_5_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Sncg Npy2r,Sncg Npy2r,SCF 50,CS202002011_50,,SCF-ENS2-C6_5_3,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Vip Serpinf1,Vip Serpinf1,SCF 51,CS202002011_51,,SCF-ENS2-C6_5_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor 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57,CS202002011_57,,SCF-ENS1-C4_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L2/3 IT (3_5) [level 1],L2/3 IT (3_5) [level 1],SCF 58,CS202002011_58,,SCF-ENS1-C4_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L4/5 IT (1) [level 1],L4/5 IT (1) [level 1],SCF 59,CS202002011_59,,SCF-ENS1-C1_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L4/5 IT (2_3) [level 1],L4/5 IT (2_3) [level 1],SCF 60,CS202002011_60,,SCF-ENS1-C1_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L5 IT [level 1],L5 IT [level 1],SCF 61,CS202002011_61,,SCF-ENS1-C3_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L6(5) IT [level 1],L6(5) IT [level 1],SCF 62,CS202002011_62,,SCF-ENS1-C3_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L6 IT Car3 [level 1],L6 IT Car3 [level 1],SCF 63,CS202002011_63,,SCF-ENS1-C3_3,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L5 ET (1) [level 1],L5 ET (1) [level 1],SCF 64,CS202002011_64,,SCF-ENS1-C9_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L5 ET (2_3) [level 1],L5 ET (2_3) [level 1],SCF 65,CS202002011_65,,SCF-ENS1-C9_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L6 CT Cpa6 [level 1],L6 CT Cpa6 [level 1],SCF 66,CS202002011_66,,SCF-ENS1-C2_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L6 CT Cpa6_Gpr139 [level 1],L6 CT Cpa6_Gpr139 [level 1],SCF 67,CS202002011_67,,SCF-ENS1-C2_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L6 CT Nxph2 [level 1],L6 CT Nxph2 [level 1],SCF 68,CS202002011_68,,SCF-ENS1-C2_3,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L5/6 NP [level 1],L5/6 NP [level 1],SCF 69,CS202002011_69,,SCF-ENS1-C7_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L5 NP Slc17a8 [level 1],L5 NP Slc17a8 [level 1],SCF 70,CS202002011_70,,SCF-ENS1-C7_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L6b Shisa6 [level 1],L6b Shisa6 [level 1],SCF 71,CS202002011_71,,SCF-ENS1-C8_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L6b Ror1 [level 1],L6b Ror1 [level 1],SCF 72,CS202002011_72,,SCF-ENS1-C8_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -L6b Kcnip1 [level 1],L6b Kcnip1 [level 1],SCF 73,CS202002011_73,,SCF-ENS1-C8_3,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Pvalb Reln_Calb1 [level 1],Pvalb Reln_Calb1 [level 1],SCF 74,CS202002011_74,,SCF-ENS1-C5_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Pvalb Gabrg1 [level 1],Pvalb Gabrg1 [level 1],SCF 75,CS202002011_75,,SCF-ENS1-C5_4,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Pvalb Vipr2 [level 1],Pvalb Vipr2 [level 1],SCF 76,CS202002011_76,,SCF-ENS1-C5_5,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Sst Myh8_Crhr2 [level 1],Sst Myh8_Crhr2 [level 1],SCF 77,CS202002011_77,,SCF-ENS1-C5_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Sst Calb2_Hspe [level 1],Sst Calb2_Hspe [level 1],SCF 78,CS202002011_78,,SCF-ENS1-C5_3,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Sst Chodl [level 1],Sst Chodl [level 1],SCF 79,CS202002011_79,,SCF-ENS1-C10_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Lamp5 Slc35d3 [level 1],Lamp5 Slc35d3 [level 1],SCF 80,CS202002011_80,,SCF-ENS1-C6_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Lamp5 Pdlim5_Pax6 [level 1],Lamp5 Pdlim5_Pax6 [level 1],SCF 81,CS202002011_81,,SCF-ENS1-C6_4,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Lamp5 Lhx6 [level 1],Lamp5 Lhx6 [level 1],SCF 82,CS202002011_82,,SCF-ENS1-C6_6,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Sncg [level 1],Sncg [level 1],SCF 83,CS202002011_83,,SCF-ENS1-C6_5,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Vip Chat_Crispld2 [level 1],Vip Chat_Crispld2 [level 1],SCF 84,CS202002011_84,,SCF-ENS1-C6_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Vip Gpc3_Htr1f_lgfbp6 [level 1],Vip Gpc3_Htr1f_lgfbp6 [level 1],SCF 85,CS202002011_85,,SCF-ENS1-C6_3,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm, -Glutamatergic,Glutamatergic,SCF 01-34,CS202002011_86,Neuronal: Glutamatergic,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_1|CS202002011_2|CS202002011_3|CS202002011_4|CS202002011_5|CS202002011_6|CS202002011_7|CS202002011_8|CS202002011_9|CS202002011_10|CS202002011_11|CS202002011_12|CS202002011_13|CS202002011_14|CS202002011_15|CS202002011_16|CS202002011_17|CS202002011_18|CS202002011_19|CS202002011_20|CS202002011_21|CS202002011_22|CS202002011_23|CS202002011_24|CS202002011_25|CS202002011_26|CS202002011_27|CS202002011_28|CS202002011_29|CS202002011_30|CS202002011_31|CS202002011_32|CS202002011_33|CS202002011_34 -IT projecting,IT projecting,SCF 01-13,CS202002011_87,IT projecting,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_1|CS202002011_2|CS202002011_3|CS202002011_4|CS202002011_5|CS202002011_6|CS202002011_7|CS202002011_8|CS202002011_9|CS202002011_10|CS202002011_11|CS202002011_12|CS202002011_13 -Non-IT projecting,Non-IT projecting,SCF 14-34,CS202002011_88,Non-IT projecting,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_14|CS202002011_15|CS202002011_16|CS202002011_17|CS202002011_18|CS202002011_19|CS202002011_20|CS202002011_21|CS202002011_22|CS202002011_23|CS202002011_24|CS202002011_25|CS202002011_26|CS202002011_27|CS202002011_28|CS202002011_29|CS202002011_30|CS202002011_31|CS202002011_32|CS202002011_33|CS202002011_34 -GABAergic,GABAergic,SCF 35-56,CS202002011_89,Neuronal: GABAergic,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_35|CS202002011_36|CS202002011_37|CS202002011_38|CS202002011_39|CS202002011_40|CS202002011_41|CS202002011_42|CS202002011_43|CS202002011_44|CS202002011_45|CS202002011_46|CS202002011_47|CS202002011_48|CS202002011_49|CS202002011_50|CS202002011_51|CS202002011_52|CS202002011_53|CS202002011_54|CS202002011_55|CS202002011_56 -CGE/PoA,CGE/PoA,SCF 45-56,CS202002011_90,CGE/PoA,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_45|CS202002011_46|CS202002011_47|CS202002011_48|CS202002011_49|CS202002011_50|CS202002011_51|CS202002011_52|CS202002011_53|CS202002011_54|CS202002011_55|CS202002011_56 -MGE,MGE,SCF 35-44,CS202002011_91,MGE,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_35|CS202002011_36|CS202002011_37|CS202002011_38|CS202002011_39|CS202002011_40|CS202002011_41|CS202002011_42|CS202002011_43|CS202002011_44 -L2/3 IT,L2/3 IT,SCF 01-05,CS202002011_92,L2/3 IT,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_1|CS202002011_2|CS202002011_3|CS202002011_4|CS202002011_5 -L4/5 IT,L4/5 IT,SCF 06-08,CS202002011_93,L4/5 IT,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_6|CS202002011_7|CS202002011_8 -L5 IT,L5 IT,SCF 09-11,CS202002011_94,L5 IT,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_9|CS202002011_10|CS202002011_11 -L5 ET,L5 ET,SCF 14-16,CS202002011_95,L5 ET,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_14|CS202002011_15|CS202002011_16 -L6 CT,L6 CT,SCF 17-25,CS202002011_96,L6 CT,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_17|CS202002011_18|CS202002011_19|CS202002011_20|CS202002011_21|CS202002011_22|CS202002011_23|CS202002011_24|CS202002011_25 -L6 CT Cpa6,L6 CT Cpa6,"SCF 17-20, 22",CS202002011_97,,RNAseq 076 in CCN202002013,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_17|CS202002011_18|CS202002011_19|CS202002011_20|CS202002011_22 -L6 CT Nxph2 Pou3f2,L6 CT Nxph2 Pou3f2,SCF 23-24,CS202002011_98,,RNAseq 078 in CCN202002013,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_23|CS202002011_24 -L5/6 NP,L5/6 NP,SCF 26-29,CS202002011_99,L5/6 NP,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_26|CS202002011_27|CS202002011_28|CS202002011_29 -L5 NP Slc17a8,L5 NP Slc17a8,SCF 27-28,CS202002011_100,,RNAseq 086-087 in CCN202002013,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_27|CS202002011_28 -L6b,L6b,SCF 30-34,CS202002011_101,L6b,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_30|CS202002011_31|CS202002011_32|CS202002011_33|CS202002011_34 -L6b Shisa6,L6b Shisa6,SCF 30-31,CS202002011_102,,RNAseq 082-083 in CCN202002013,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_30|CS202002011_31 -L6b Kcnip1,L6b Kcnip1,SCF 33-34,CS202002011_103,,RNAseq 085 in CCN202002013,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_33|CS202002011_34 -Pvalb,Pvalb,SCF 35-38,CS202002011_104,Pvalb,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_35|CS202002011_36|CS202002011_37|CS202002011_38 -Sst,Sst,SCF 39-44,CS202002011_105,Sst,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_39|CS202002011_40|CS202002011_41|CS202002011_42|CS202002011_43|CS202002011_44 -Sst Crhr2,Sst Crhr2,SCF 40-41,CS202002011_106,,RNAseq 036-037 in CCN202002013,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_40|CS202002011_41 -Lamp5,Lamp5,SCF 45-48,CS202002011_107,Lamp5,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_45|CS202002011_46|CS202002011_47|CS202002011_48 -Sncg,Sncg,SCF 49-50,CS202002011_108,Sncg,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_49|CS202002011_50 -Vip,Vip,SCF 51-56,CS202002011_109,Vip,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_51|CS202002011_52|CS202002011_53|CS202002011_54|CS202002011_55|CS202002011_56 -,All cells,SCF 01-85,CS202002011_110,,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_1|CS202002011_2|CS202002011_3|CS202002011_4|CS202002011_5|CS202002011_6|CS202002011_7|CS202002011_8|CS202002011_9|CS202002011_10|CS202002011_11|CS202002011_12|CS202002011_13|CS202002011_14|CS202002011_15|CS202002011_16|CS202002011_17|CS202002011_18|CS202002011_19|CS202002011_20|CS202002011_21|CS202002011_22|CS202002011_23|CS202002011_24|CS202002011_25|CS202002011_26|CS202002011_27|CS202002011_28|CS202002011_29|CS202002011_30|CS202002011_31|CS202002011_32|CS202002011_33|CS202002011_34|CS202002011_35|CS202002011_36|CS202002011_37|CS202002011_38|CS202002011_39|CS202002011_40|CS202002011_41|CS202002011_42|CS202002011_43|CS202002011_44|CS202002011_45|CS202002011_46|CS202002011_47|CS202002011_48|CS202002011_49|CS202002011_50|CS202002011_51|CS202002011_52|CS202002011_53|CS202002011_54|CS202002011_55|CS202002011_56|CS202002011_57|CS202002011_58|CS202002011_59|CS202002011_60|CS202002011_61|CS202002011_62|CS202002011_63|CS202002011_64|CS202002011_65|CS202002011_66|CS202002011_67|CS202002011_68|CS202002011_69|CS202002011_70|CS202002011_71|CS202002011_72|CS202002011_73|CS202002011_74|CS202002011_75|CS202002011_76|CS202002011_77|CS202002011_78|CS202002011_79|CS202002011_80|CS202002011_81|CS202002011_82|CS202002011_83|CS202002011_84|CS202002011_85 \ No newline at end of file +cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions,cell_type_card +L2/3 IT (1),L2/3 IT (1),SCF 01,CS202002011_1,,SCF-ENS2-C4_1_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L2/3 IT (2),L2/3 IT (2),SCF 02,CS202002011_2,,SCF-ENS2-C4_1_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L2/3 IT (3),L2/3 IT (3),SCF 03,CS202002011_3,,SCF-ENS2-C4_2_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L2/3 IT (4),L2/3 IT (4),SCF 04,CS202002011_4,,SCF-ENS2-C4_2_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L2/3 IT (5),L2/3 IT (5),SCF 05,CS202002011_5,,SCF-ENS2-C4_2_3,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L4/5 IT (1),L4/5 IT (1),SCF 06,CS202002011_6,,SCF-ENS2-C1_1_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L4/5 IT (2),L4/5 IT (2),SCF 07,CS202002011_7,,SCF-ENS2-C1_2_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L4/5 IT (3),L4/5 IT (3),SCF 08,CS202002011_8,,SCF-ENS2-C1_2_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L5 IT (1),L5 IT (1),SCF 09,CS202002011_9,,SCF-ENS2-C3_1_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L5 IT (2),L5 IT (2),SCF 10,CS202002011_10,,SCF-ENS2-C3_2_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L5 IT (3),L5 IT (3),SCF 11,CS202002011_11,,SCF-ENS2-C3_2_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L6 IT,L6 IT,SCF 12,CS202002011_12,L6 IT,SCF-ENS2-C3_1_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L6 IT Car3,L6 IT Car3,SCF 13,CS202002011_13,L6 IT Car3,SCF-ENS2-C3_3_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L5 ET (1),L5 ET (1),SCF 14,CS202002011_14,,SCF-ENS2-C9_1_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L5 ET (2),L5 ET (2),SCF 15,CS202002011_15,,SCF-ENS2-C9_2_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L5 ET (3),L5 ET (3),SCF 16,CS202002011_16,,SCF-ENS2-C9_2_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L6 CT Cpa6 (1),L6 CT Cpa6 (1),SCF 17,CS202002011_17,,SCF-ENS2-C2_1_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L6 CT Cpa6 (2),L6 CT Cpa6 (2),SCF 18,CS202002011_18,,SCF-ENS2-C2_1_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L6 CT Cpa6 (3),L6 CT Cpa6 (3),SCF 19,CS202002011_19,,SCF-ENS2-C2_2_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L6 CT Cpa6 (4),L6 CT Cpa6 (4),SCF 20,CS202002011_20,,SCF-ENS2-C2_2_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L6 CT Gpr139,L6 CT Gpr139,SCF 21,CS202002011_21,,SCF-ENS2-C2_2_3,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L6 CT Cpa6 (5),L6 CT Cpa6 (5),SCF 22,CS202002011_22,,SCF-ENS2-C2_2_4,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L6 CT Nxph2 Pou3f2 (1),L6 CT Nxph2 Pou3f2 (1),SCF 23,CS202002011_23,,SCF-ENS2-C2_3_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L6 CT Nxph2 Pou3f2 (2),L6 CT Nxph2 Pou3f2 (2),SCF 24,CS202002011_24,,SCF-ENS2-C2_3_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L6 CT Nxph2 Kit,L6 CT Nxph2 Kit,SCF 25,CS202002011_25,,SCF-ENS2-C2_3_3,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L5 NP Trh,L5 NP Trh,SCF 26,CS202002011_26,,SCF-ENS2-C7_1_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L5 NP Slc17a8 (2),L5 NP Slc17a8 (2),SCF 27,CS202002011_27,,SCF-ENS2-C7_2_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L5 NP Slc17a8 (1),L5 NP Slc17a8 (1),SCF 28,CS202002011_28,,SCF-ENS2-C7_2_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L6 NP Trh,L6 NP Trh,SCF 29,CS202002011_29,,SCF-ENS2-C7_1_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L6b Shisa6 (1),L6b Shisa6 (1),SCF 30,CS202002011_30,,SCF-ENS2-C8_1_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L6b Shisa6 (2),L6b Shisa6 (2),SCF 31,CS202002011_31,,SCF-ENS2-C8_1_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L6b Ror1,L6b Ror1,SCF 32,CS202002011_32,,SCF-ENS2-C8_2_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L6b Kcnip1 (2),L6b Kcnip1 (2),SCF 33,CS202002011_33,,SCF-ENS2-C8_3_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L6b Kcnip1 (1),L6b Kcnip1 (1),SCF 34,CS202002011_34,,SCF-ENS2-C8_3_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Pvalb Reln,Pvalb Reln,SCF 35,CS202002011_35,,SCF-ENS2-C5_1_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Pvalb Calb1,Pvalb Calb1,SCF 36,CS202002011_36,,SCF-ENS2-C5_1_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Pvalb Gabrg1,Pvalb Gabrg1,SCF 37,CS202002011_37,,SCF-ENS2-C5_4_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Pvalb Vipr2,Pvalb Vipr2,SCF 38,CS202002011_38,Chandelier,SCF-ENS2-C5_5_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Sst Myh8,Sst Myh8,SCF 39,CS202002011_39,,SCF-ENS2-C5_2_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Sst Crhr2 (1),Sst Crhr2 (1),SCF 40,CS202002011_40,,SCF-ENS2-C5_2_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Sst Crhr2 (2),Sst Crhr2 (2),SCF 41,CS202002011_41,,SCF-ENS2-C5_2_3,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Sst Calb2,Sst Calb2,SCF 42,CS202002011_42,,SCF-ENS2-C5_3_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Sst Hspe,Sst Hspe,SCF 43,CS202002011_43,,SCF-ENS2-C5_3_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Sst Chodl,Sst Chodl,SCF 44,CS202002011_44,Sst Chodl,SCF-ENS2-C10_1_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Lamp5 Slc35d3,Lamp5 Slc35d3,SCF 45,CS202002011_45,,SCF-ENS2-C6_2_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Lamp5 Pdlim5,Lamp5 Pdlim5,SCF 46,CS202002011_46,,SCF-ENS2-C6_4_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Lamp5 Pax6,Lamp5 Pax6,SCF 47,CS202002011_47,,SCF-ENS2-C6_4_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Lamp5 Lhx6,Lamp5 Lhx6,SCF 48,CS202002011_48,Lamp5 Lhx6,SCF-ENS2-C6_6_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Sncg Col14a1,Sncg Col14a1,SCF 49,CS202002011_49,,SCF-ENS2-C6_5_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Sncg Npy2r,Sncg Npy2r,SCF 50,CS202002011_50,,SCF-ENS2-C6_5_3,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Vip Serpinf1,Vip Serpinf1,SCF 51,CS202002011_51,,SCF-ENS2-C6_5_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Vip Chat,Vip Chat,SCF 52,CS202002011_52,,SCF-ENS2-C6_1_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Vip Crispld2,Vip Crispld2,SCF 53,CS202002011_53,,SCF-ENS2-C6_1_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Vip Gpc3,Vip Gpc3,SCF 54,CS202002011_54,,SCF-ENS2-C6_3_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Vip Htr1f,Vip Htr1f,SCF 55,CS202002011_55,,SCF-ENS2-C6_3_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Vip Igfbp6,Vip Igfbp6,SCF 56,CS202002011_56,,SCF-ENS2-C6_3_3,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L2/3 IT (1_2) [level 1],L2/3 IT (1_2) [level 1],SCF 57,CS202002011_57,,SCF-ENS1-C4_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L2/3 IT (3_5) [level 1],L2/3 IT (3_5) [level 1],SCF 58,CS202002011_58,,SCF-ENS1-C4_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L4/5 IT (1) [level 1],L4/5 IT (1) [level 1],SCF 59,CS202002011_59,,SCF-ENS1-C1_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L4/5 IT (2_3) [level 1],L4/5 IT (2_3) [level 1],SCF 60,CS202002011_60,,SCF-ENS1-C1_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L5 IT [level 1],L5 IT [level 1],SCF 61,CS202002011_61,,SCF-ENS1-C3_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L6(5) IT [level 1],L6(5) IT [level 1],SCF 62,CS202002011_62,,SCF-ENS1-C3_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L6 IT Car3 [level 1],L6 IT Car3 [level 1],SCF 63,CS202002011_63,,SCF-ENS1-C3_3,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L5 ET (1) [level 1],L5 ET (1) [level 1],SCF 64,CS202002011_64,,SCF-ENS1-C9_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L5 ET (2_3) [level 1],L5 ET (2_3) [level 1],SCF 65,CS202002011_65,,SCF-ENS1-C9_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L6 CT Cpa6 [level 1],L6 CT Cpa6 [level 1],SCF 66,CS202002011_66,,SCF-ENS1-C2_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L6 CT Cpa6_Gpr139 [level 1],L6 CT Cpa6_Gpr139 [level 1],SCF 67,CS202002011_67,,SCF-ENS1-C2_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L6 CT Nxph2 [level 1],L6 CT Nxph2 [level 1],SCF 68,CS202002011_68,,SCF-ENS1-C2_3,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L5/6 NP [level 1],L5/6 NP [level 1],SCF 69,CS202002011_69,,SCF-ENS1-C7_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L5 NP Slc17a8 [level 1],L5 NP Slc17a8 [level 1],SCF 70,CS202002011_70,,SCF-ENS1-C7_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L6b Shisa6 [level 1],L6b Shisa6 [level 1],SCF 71,CS202002011_71,,SCF-ENS1-C8_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L6b Ror1 [level 1],L6b Ror1 [level 1],SCF 72,CS202002011_72,,SCF-ENS1-C8_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +L6b Kcnip1 [level 1],L6b Kcnip1 [level 1],SCF 73,CS202002011_73,,SCF-ENS1-C8_3,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Pvalb Reln_Calb1 [level 1],Pvalb Reln_Calb1 [level 1],SCF 74,CS202002011_74,,SCF-ENS1-C5_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Pvalb Gabrg1 [level 1],Pvalb Gabrg1 [level 1],SCF 75,CS202002011_75,,SCF-ENS1-C5_4,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Pvalb Vipr2 [level 1],Pvalb Vipr2 [level 1],SCF 76,CS202002011_76,,SCF-ENS1-C5_5,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Sst Myh8_Crhr2 [level 1],Sst Myh8_Crhr2 [level 1],SCF 77,CS202002011_77,,SCF-ENS1-C5_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Sst Calb2_Hspe [level 1],Sst Calb2_Hspe [level 1],SCF 78,CS202002011_78,,SCF-ENS1-C5_3,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Sst Chodl [level 1],Sst Chodl [level 1],SCF 79,CS202002011_79,,SCF-ENS1-C10_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Lamp5 Slc35d3 [level 1],Lamp5 Slc35d3 [level 1],SCF 80,CS202002011_80,,SCF-ENS1-C6_2,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Lamp5 Pdlim5_Pax6 [level 1],Lamp5 Pdlim5_Pax6 [level 1],SCF 81,CS202002011_81,,SCF-ENS1-C6_4,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Lamp5 Lhx6 [level 1],Lamp5 Lhx6 [level 1],SCF 82,CS202002011_82,,SCF-ENS1-C6_6,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Sncg [level 1],Sncg [level 1],SCF 83,CS202002011_83,,SCF-ENS1-C6_5,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Vip Chat_Crispld2 [level 1],Vip Chat_Crispld2 [level 1],SCF 84,CS202002011_84,,SCF-ENS1-C6_1,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Vip Gpc3_Htr1f_lgfbp6 [level 1],Vip Gpc3_Htr1f_lgfbp6 [level 1],SCF 85,CS202002011_85,,SCF-ENS1-C6_3,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,,No +Glutamatergic,Glutamatergic,SCF 01-34,CS202002011_86,Neuronal: Glutamatergic,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_1|CS202002011_2|CS202002011_3|CS202002011_4|CS202002011_5|CS202002011_6|CS202002011_7|CS202002011_8|CS202002011_9|CS202002011_10|CS202002011_11|CS202002011_12|CS202002011_13|CS202002011_14|CS202002011_15|CS202002011_16|CS202002011_17|CS202002011_18|CS202002011_19|CS202002011_20|CS202002011_21|CS202002011_22|CS202002011_23|CS202002011_24|CS202002011_25|CS202002011_26|CS202002011_27|CS202002011_28|CS202002011_29|CS202002011_30|CS202002011_31|CS202002011_32|CS202002011_33|CS202002011_34,No +IT projecting,IT projecting,SCF 01-13,CS202002011_87,IT projecting,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_1|CS202002011_2|CS202002011_3|CS202002011_4|CS202002011_5|CS202002011_6|CS202002011_7|CS202002011_8|CS202002011_9|CS202002011_10|CS202002011_11|CS202002011_12|CS202002011_13,No +Non-IT projecting,Non-IT projecting,SCF 14-34,CS202002011_88,Non-IT projecting,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_14|CS202002011_15|CS202002011_16|CS202002011_17|CS202002011_18|CS202002011_19|CS202002011_20|CS202002011_21|CS202002011_22|CS202002011_23|CS202002011_24|CS202002011_25|CS202002011_26|CS202002011_27|CS202002011_28|CS202002011_29|CS202002011_30|CS202002011_31|CS202002011_32|CS202002011_33|CS202002011_34,No +GABAergic,GABAergic,SCF 35-56,CS202002011_89,Neuronal: GABAergic,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_35|CS202002011_36|CS202002011_37|CS202002011_38|CS202002011_39|CS202002011_40|CS202002011_41|CS202002011_42|CS202002011_43|CS202002011_44|CS202002011_45|CS202002011_46|CS202002011_47|CS202002011_48|CS202002011_49|CS202002011_50|CS202002011_51|CS202002011_52|CS202002011_53|CS202002011_54|CS202002011_55|CS202002011_56,No +CGE/PoA,CGE/PoA,SCF 45-56,CS202002011_90,CGE/PoA,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_45|CS202002011_46|CS202002011_47|CS202002011_48|CS202002011_49|CS202002011_50|CS202002011_51|CS202002011_52|CS202002011_53|CS202002011_54|CS202002011_55|CS202002011_56,No +MGE,MGE,SCF 35-44,CS202002011_91,MGE,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_35|CS202002011_36|CS202002011_37|CS202002011_38|CS202002011_39|CS202002011_40|CS202002011_41|CS202002011_42|CS202002011_43|CS202002011_44,No +L2/3 IT,L2/3 IT,SCF 01-05,CS202002011_92,L2/3 IT,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_1|CS202002011_2|CS202002011_3|CS202002011_4|CS202002011_5,No +L4/5 IT,L4/5 IT,SCF 06-08,CS202002011_93,L4/5 IT,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_6|CS202002011_7|CS202002011_8,No +L5 IT,L5 IT,SCF 09-11,CS202002011_94,L5 IT,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_9|CS202002011_10|CS202002011_11,No +L5 ET,L5 ET,SCF 14-16,CS202002011_95,L5 ET,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_14|CS202002011_15|CS202002011_16,No +L6 CT,L6 CT,SCF 17-25,CS202002011_96,L6 CT,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_17|CS202002011_18|CS202002011_19|CS202002011_20|CS202002011_21|CS202002011_22|CS202002011_23|CS202002011_24|CS202002011_25,No +L6 CT Cpa6,L6 CT Cpa6,"SCF 17-20, 22",CS202002011_97,,RNAseq 076 in CCN202002013,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_17|CS202002011_18|CS202002011_19|CS202002011_20|CS202002011_22,No +L6 CT Nxph2 Pou3f2,L6 CT Nxph2 Pou3f2,SCF 23-24,CS202002011_98,,RNAseq 078 in CCN202002013,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_23|CS202002011_24,No +L5/6 NP,L5/6 NP,SCF 26-29,CS202002011_99,L5/6 NP,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_26|CS202002011_27|CS202002011_28|CS202002011_29,No +L5 NP Slc17a8,L5 NP Slc17a8,SCF 27-28,CS202002011_100,,RNAseq 086-087 in CCN202002013,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_27|CS202002011_28,No +L6b,L6b,SCF 30-34,CS202002011_101,L6b,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_30|CS202002011_31|CS202002011_32|CS202002011_33|CS202002011_34,No +L6b Shisa6,L6b Shisa6,SCF 30-31,CS202002011_102,,RNAseq 082-083 in CCN202002013,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_30|CS202002011_31,No +L6b Kcnip1,L6b Kcnip1,SCF 33-34,CS202002011_103,,RNAseq 085 in CCN202002013,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_33|CS202002011_34,No +Pvalb,Pvalb,SCF 35-38,CS202002011_104,Pvalb,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_35|CS202002011_36|CS202002011_37|CS202002011_38,No +Sst,Sst,SCF 39-43,CS202002011_105,Sst,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_39|CS202002011_40|CS202002011_41|CS202002011_42|CS202002011_43,No +Sst Crhr2,Sst Crhr2,SCF 40-41,CS202002011_106,,RNAseq 036-037 in CCN202002013,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_40|CS202002011_41,No +Lamp5,Lamp5,SCF 45-48,CS202002011_107,Lamp5,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_45|CS202002011_46|CS202002011_47|CS202002011_48,No +Sncg,Sncg,SCF 49-50,CS202002011_108,Sncg,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_49|CS202002011_50,No +Vip,Vip,SCF 51-56,CS202002011_109,Vip,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_51|CS202002011_52|CS202002011_53|CS202002011_54|CS202002011_55|CS202002011_56,No +All cells,All cells,SCF 01-85,CS202002011_110,,,Eran Mukamel,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002011,Mouse,RNAseq|ATACseq|DNAm,CS202002011_1|CS202002011_2|CS202002011_3|CS202002011_4|CS202002011_5|CS202002011_6|CS202002011_7|CS202002011_8|CS202002011_9|CS202002011_10|CS202002011_11|CS202002011_12|CS202002011_13|CS202002011_14|CS202002011_15|CS202002011_16|CS202002011_17|CS202002011_18|CS202002011_19|CS202002011_20|CS202002011_21|CS202002011_22|CS202002011_23|CS202002011_24|CS202002011_25|CS202002011_26|CS202002011_27|CS202002011_28|CS202002011_29|CS202002011_30|CS202002011_31|CS202002011_32|CS202002011_33|CS202002011_34|CS202002011_35|CS202002011_36|CS202002011_37|CS202002011_38|CS202002011_39|CS202002011_40|CS202002011_41|CS202002011_42|CS202002011_43|CS202002011_44|CS202002011_45|CS202002011_46|CS202002011_47|CS202002011_48|CS202002011_49|CS202002011_50|CS202002011_51|CS202002011_52|CS202002011_53|CS202002011_54|CS202002011_55|CS202002011_56|CS202002011_57|CS202002011_58|CS202002011_59|CS202002011_60|CS202002011_61|CS202002011_62|CS202002011_63|CS202002011_64|CS202002011_65|CS202002011_66|CS202002011_67|CS202002011_68|CS202002011_69|CS202002011_70|CS202002011_71|CS202002011_72|CS202002011_73|CS202002011_74|CS202002011_75|CS202002011_76|CS202002011_77|CS202002011_78|CS202002011_79|CS202002011_80|CS202002011_81|CS202002011_82|CS202002011_83|CS202002011_84|CS202002011_85,No \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202002012.csv b/src/dendrograms/nomenclature_table_CCN202002012.csv index e0fb0ae8..d3bf54d6 100644 --- a/src/dendrograms/nomenclature_table_CCN202002012.csv +++ b/src/dendrograms/nomenclature_table_CCN202002012.csv @@ -1,108 +1,108 @@ -cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions -L2/3 IT (it_0),L2/3 IT (it_0),LIGER 01,CS202002012_1,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -L2/3 IT (it_10),L2/3 IT (it_10),LIGER 02,CS202002012_2,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -L2/3 IT (it_5),L2/3 IT (it_5),LIGER 03,CS202002012_3,,RNAseq 060 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -L2/3 IT (it_7),L2/3 IT (it_7),LIGER 04,CS202002012_4,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -L2/3 IT (it_9),L2/3 IT (it_9),LIGER 05,CS202002012_5,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -L4/5 IT (it_1),L4/5 IT (it_1),LIGER 06,CS202002012_6,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -L4/5 IT (it_2),L4/5 IT (it_2),LIGER 07,CS202002012_7,,RNAseq 062 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -L4/5 IT (it_8),L4/5 IT (it_8),LIGER 08,CS202002012_8,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -L5 IT (it_3),L5 IT (it_3),LIGER 09,CS202002012_9,,RNAseq 064 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -L5 IT (it_6),L5 IT (it_6),LIGER 10,CS202002012_10,,RNAseq 063 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -L6 IT (it_4),L6 IT (it_4),LIGER 11,CS202002012_11,L6 IT,RNAseq 067-069 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -L5 ET (non_it_11),L5 ET (non_it_11),LIGER 12,CS202002012_12,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -L5 ET (non_it_12),L5 ET (non_it_12),LIGER 13,CS202002012_13,,RNAseq 070 in CCN202002013|L5 ET (MY-projecting),Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -L5 ET (non_it_4),L5 ET (non_it_4),LIGER 14,CS202002012_14,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -L5 ET (non_it_9),L5 ET (non_it_9),LIGER 15,CS202002012_15,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -L6 CT Cpa6 (non_it_0),L6 CT Cpa6 (non_it_0),LIGER 16,CS202002012_16,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -L6 CT Cpa6 (non_it_1),L6 CT Cpa6 (non_it_1),LIGER 17,CS202002012_17,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -L6 CT Cpa6 (non_it_10),L6 CT Cpa6 (non_it_10),LIGER 18,CS202002012_18,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -L6 CT Cpa6 (non_it_5),L6 CT Cpa6 (non_it_5),LIGER 19,CS202002012_19,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -L6 CT Cpa6 (non_it_8),L6 CT Cpa6 (non_it_8),LIGER 20,CS202002012_20,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -L6 CT Pou3f2 (non_it_2),L6 CT Pou3f2 (non_it_2),LIGER 21,CS202002012_21,,RNAseq 078 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -L6b Ror1 (non_it_7),L6b Ror1 (non_it_7),LIGER 22,CS202002012_22,L6b,RNAseq 084 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -L5/6 NP (non_it_3),L5/6 NP (non_it_3),LIGER 23,CS202002012_23,,RNAseq 088 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -L5/6 NP (non_it_6),L5/6 NP (non_it_6),LIGER 24,CS202002012_24,,RNAseq 087 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Pvalb Reln (mge_0),Pvalb Reln (mge_0),LIGER 25,CS202002012_25,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Pvalb Calb1 (mge_1),Pvalb Calb1 (mge_1),LIGER 26,CS202002012_26,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Pvalb Gabrg1 (mge_10),Pvalb Gabrg1 (mge_10),LIGER 27,CS202002012_27,,RNAseq 048 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Pvalb Il1rapl2 (mge_4),Pvalb Il1rapl2 (mge_4),LIGER 28,CS202002012_28,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Pvalb Gpr149 (mge_9),Pvalb Gpr149 (mge_9),LIGER 29,CS202002012_29,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Pvalb Vipr2 (mge_12),Pvalb Vipr2 (mge_12),LIGER 30,CS202002012_30,Chandelier,RNAseq 056-057 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Sst Pvalb Calb2 (mge_6),Sst Pvalb Calb2 (mge_6),LIGER 31,CS202002012_31,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Sst C1ql3 (mge_13),Sst C1ql3 (mge_13),LIGER 32,CS202002012_32,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Sst Calb2 (mge_14),Sst Calb2 (mge_14),LIGER 33,CS202002012_33,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Sst Hpse (mge_2),Sst Hpse (mge_2),LIGER 34,CS202002012_34,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Sst Myh8 (mge_3),Sst Myh8 (mge_3),LIGER 35,CS202002012_35,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Sst C1ql3 (mge_5),Sst C1ql3 (mge_5),LIGER 36,CS202002012_36,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Sst Crhr2 (mge_7),Sst Crhr2 (mge_7),LIGER 37,CS202002012_37,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Sst Myh8 (mge_8),Sst Myh8 (mge_8),LIGER 38,CS202002012_38,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Sst Chodl (mge_11),Sst Chodl (mge_11),LIGER 39,CS202002012_39,Sst Chodl,RNAseq 028 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Vip Chat (cge_15),Vip Chat (cge_15),LIGER 40,CS202002012_40,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Vip Chat (cge_3),Vip Chat (cge_3),LIGER 41,CS202002012_41,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Vip Chat (cge_7),Vip Chat (cge_7),LIGER 42,CS202002012_42,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Vip Chat (cge_10),Vip Chat (cge_10),LIGER 43,CS202002012_43,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Vip Serpinf1 (cge_11),Vip Serpinf1 (cge_11),LIGER 44,CS202002012_44,,RNAseq 015-017 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Vip Gpc3 (cge_9),Vip Gpc3 (cge_9),LIGER 45,CS202002012_45,,RNAseq 019 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Vip Igfbp6 (cge_6),Vip Igfbp6 (cge_6),LIGER 46,CS202002012_46,,RNAseq 026-027 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Vip Htr1f (cge_2),Vip Htr1f (cge_2),LIGER 47,CS202002012_47,,RNAseq 018 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Vip Mybpc1 (cge_4),Vip Mybpc1 (cge_4),LIGER 48,CS202002012_48,,"RNAseq 021-022, 024 in CCN202002013",Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Sncg Npy2r (cge_8),Sncg Npy2r (cge_8),LIGER 49,CS202002012_49,,RNAseq 013 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Sncg Slc17a8 (cge_13),Sncg Slc17a8 (cge_13),LIGER 50,CS202002012_50,,RNAseq 010 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Lamp5 Lhx6 (cge_14),Lamp5 Lhx6 (cge_14),LIGER 51,CS202002012_51,Lamp5 Lhx6,RNAseq 008 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Lamp5 Slc35d3 (cge_0),Lamp5 Slc35d3 (cge_0),LIGER 52,CS202002012_52,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Lamp5 Slc35d3 (cge_16),Lamp5 Slc35d3 (cge_16),LIGER 53,CS202002012_53,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Lamp5 Egln3_3 (cge_5),Lamp5 Egln3_3 (cge_5),LIGER 54,CS202002012_54,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Lamp5 Pdlim5_2 (cge_1),Lamp5 Pdlim5_2 (cge_1),LIGER 55,CS202002012_55,,RNAseq 006 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Lamp5 Pax6 (cge_12),Lamp5 Pax6 (cge_12),LIGER 56,CS202002012_56,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Astro_Top2a (nn_14),Astro_Top2a (nn_14),LIGER 57,CS202002012_57,,RNAseq 092 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Astro Aqp4_Gfap (nn_6),Astro Aqp4_Gfap (nn_6),LIGER 58,CS202002012_58,,RNAseq 093 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Astro Aqp4_Slc7a10 (nn_1),Astro Aqp4_Slc7a10 (nn_1),LIGER 59,CS202002012_59,,RNAseq 094 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -OPC Pdgfra (nn_3),OPC Pdgfra (nn_3),LIGER 60,CS202002012_60,OPC,RNAseq 091 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Oligo Enpp6_2 (nn_8),Oligo Enpp6_2 (nn_8),LIGER 61,CS202002012_61,,RNAseq 095 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Oligo Opalin_1 (nn_4),Oligo Opalin_1 (nn_4),LIGER 62,CS202002012_62,,RNAseq 099 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Oligo Opalin_2 (nn_0),Oligo Opalin_2 (nn_0),LIGER 63,CS202002012_63,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Oligo Opalin_2 (nn_11),Oligo Opalin_2 (nn_11),LIGER 64,CS202002012_64,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Endo (nn_5),Endo (nn_5),LIGER 65,CS202002012_65,Endothelial,RNAseq 103 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -VLMC_2 (nn_7),VLMC_2 (nn_7),LIGER 66,CS202002012_66,,RNAseq 105 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -VLMC_3 (nn_12),VLMC_3 (nn_12),LIGER 67,CS202002012_67,,RNAseq 106 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -VLMC_5 (nn_10),VLMC_5 (nn_10),LIGER 68,CS202002012_68,,RNAseq 108 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -SMC (nn_9),SMC (nn_9),LIGER 69,CS202002012_69,SMC,RNAseq 111 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Micro (nn_2),Micro (nn_2),LIGER 70,CS202002012_70,Microglia,RNAseq 113 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -PVM_1 (nn_13),PVM_1 (nn_13),LIGER 71,CS202002012_71,PVM,RNAseq 114 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm, -Glutamatergic,Glutamatergic,LIGER 01-24,CS202002012_72,Neuronal: Glutamatergic,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_1|CS202002012_2|CS202002012_3|CS202002012_4|CS202002012_5|CS202002012_6|CS202002012_7|CS202002012_8|CS202002012_9|CS202002012_10|CS202002012_11|CS202002012_12|CS202002012_13|CS202002012_14|CS202002012_15|CS202002012_16|CS202002012_17|CS202002012_18|CS202002012_19|CS202002012_20|CS202002012_21|CS202002012_22|CS202002012_23|CS202002012_24 -IT projecting,IT projecting,LIGER 01-11,CS202002012_73,IT projecting,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_1|CS202002012_2|CS202002012_3|CS202002012_4|CS202002012_5|CS202002012_6|CS202002012_7|CS202002012_8|CS202002012_9|CS202002012_10|CS202002012_11 -Non-IT projecting,Non-IT projecting,LIGER 12-24,CS202002012_74,Non-IT projecting,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_12|CS202002012_13|CS202002012_14|CS202002012_15|CS202002012_16|CS202002012_17|CS202002012_18|CS202002012_19|CS202002012_20|CS202002012_21|CS202002012_22|CS202002012_23|CS202002012_24 -GABAergic,GABAergic,LIGER 25-56,CS202002012_75,Neuronal: GABAergic,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_25|CS202002012_26|CS202002012_27|CS202002012_28|CS202002012_29|CS202002012_30|CS202002012_31|CS202002012_32|CS202002012_33|CS202002012_34|CS202002012_35|CS202002012_36|CS202002012_37|CS202002012_38|CS202002012_39|CS202002012_40|CS202002012_41|CS202002012_42|CS202002012_43|CS202002012_44|CS202002012_45|CS202002012_46|CS202002012_47|CS202002012_48|CS202002012_49|CS202002012_50|CS202002012_51|CS202002012_52|CS202002012_53|CS202002012_54|CS202002012_55|CS202002012_56 -CGE/PoA,CGE/PoA,LIGER 25-39,CS202002012_76,CGE/PoA,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_25|CS202002012_26|CS202002012_27|CS202002012_28|CS202002012_29|CS202002012_30|CS202002012_31|CS202002012_32|CS202002012_33|CS202002012_34|CS202002012_35|CS202002012_36|CS202002012_37|CS202002012_38|CS202002012_39 -MGE,MGE,LIGER 40-56,CS202002012_77,MGE,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_40|CS202002012_41|CS202002012_42|CS202002012_43|CS202002012_44|CS202002012_45|CS202002012_46|CS202002012_47|CS202002012_48|CS202002012_49|CS202002012_50|CS202002012_51|CS202002012_52|CS202002012_53|CS202002012_54|CS202002012_55|CS202002012_56 -L2/3 IT,L2/3 IT,LIGER 01-05,CS202002012_78,L2/3 IT,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_1|CS202002012_2|CS202002012_3|CS202002012_4|CS202002012_5 -L2/3 IT_1,L2/3 IT_1,"LIGER 01, 03, 05",CS202002012_79,,RNAseq 058 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_1|CS202002012_3|CS202002012_5 -L4/5 IT,L4/5 IT,LIGER 06-08,CS202002012_80,L4/5 IT,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_6|CS202002012_7|CS202002012_8 -L4/5 IT_1,L4/5 IT_1,"LIGER 02, 04, 06, 08",CS202002012_81,,RNAseq 061 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_2|CS202002012_4|CS202002012_6|CS202002012_8 -L5 IT,L5 IT,LIGER 09-10,CS202002012_82,L5 IT,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_9|CS202002012_10 -L5 ET,L5 ET,LIGER 12-15,CS202002012_83,L5 ET,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_12|CS202002012_13|CS202002012_14|CS202002012_15 -L5 ET_2,L5 ET_2,"LIGER 12, 14-15",CS202002012_84,,RNAseq 071 in CCN202002013|L5 ET (Non-MY-projecting),Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_12|CS202002012_14|CS202002012_15 -L5/6 NP,L5/6 NP,LIGER 23-24,CS202002012_85,L5/6 NP,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_23|CS202002012_24 -L6 CT,L6 CT,LIGER 16-21,CS202002012_86,L6 CT,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_16|CS202002012_17|CS202002012_18|CS202002012_19|CS202002012_20|CS202002012_21 -L6 CT Cpa6,L6 CT Cpa6,LIGER 16-20,CS202002012_87,,RNAseq 076 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_16|CS202002012_17|CS202002012_18|CS202002012_19|CS202002012_20 -Pvalb,Pvalb,LIGER 25-30,CS202002012_88,Pvalb,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_25|CS202002012_26|CS202002012_27|CS202002012_28|CS202002012_29|CS202002012_30 -Pvalb Reln,Pvalb Reln,"LIGER 25, 28",CS202002012_89,,RNAseq 054 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_25|CS202002012_28 -Pvalb Calb1,Pvalb Calb1,"LIGER 26, 29",CS202002012_90,,RNAseq 052-053 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_26|CS202002012_29 -Sst,Sst,LIGER 31-39,CS202002012_91,Sst,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_31|CS202002012_32|CS202002012_33|CS202002012_34|CS202002012_35|CS202002012_36|CS202002012_37|CS202002012_38|CS202002012_39 -Sst Calb2,Sst Calb2,"LIGER 31, 33-34",CS202002012_92,,RNAseq 039 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_31|CS202002012_33|CS202002012_34 -Sst Crhr2_1,Sst Crhr2_1,"LIGER 32, 36-37",CS202002012_93,,RNAseq 036 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_32|CS202002012_36|CS202002012_37 -Sst Myh8,Sst Myh8,"LIGER 35, 38",CS202002012_94,,RNAseq 030-032 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_35|CS202002012_38 -Vip,Vip,LIGER 40-48,CS202002012_95,Vip,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_40|CS202002012_41|CS202002012_42|CS202002012_43|CS202002012_44|CS202002012_45|CS202002012_46|CS202002012_47|CS202002012_48 -Vip Chat,Vip Chat,LIGER 41-43,CS202002012_96,,"RNAseq 023, 025 in CCN202002013",Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_41|CS202002012_42|CS202002012_43 -Sncg,Sncg,LIGER 49-50,CS202002012_97,Sncg,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_49|CS202002012_50 -Lamp5,Lamp5,LIGER 51-56,CS202002012_98,Lamp5,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_51|CS202002012_52|CS202002012_53|CS202002012_54|CS202002012_55|CS202002012_56 -Lamp5 Slc35d3,Lamp5 Slc35d3,"LIGER 40, 52-53",CS202002012_99,,RNAseq 007 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_40|CS202002012_52|CS202002012_53 -Lamp5 Pax6,Lamp5 Pax6,"LIGER 54, 56",CS202002012_100,,RNAseq 001 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_54|CS202002012_56 -Non-neuronal,Non-neuronal,LIGER 57-64,CS202002012_101,Non-neuronal,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_57|CS202002012_58|CS202002012_59|CS202002012_60|CS202002012_61|CS202002012_62|CS202002012_63|CS202002012_64 -Non-neural,Non-neural,LIGER 65-71,CS202002012_102,Non-neural,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_65|CS202002012_66|CS202002012_67|CS202002012_68|CS202002012_69|CS202002012_70|CS202002012_71 -Astrocyte,Astrocyte,LIGER 57-59,CS202002012_103,Astrocyte,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_57|CS202002012_58|CS202002012_59 -Oligodendrocyte,Oligodendrocyte,LIGER 61-64,CS202002012_104,Oligodendrocyte,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_61|CS202002012_62|CS202002012_63|CS202002012_64 -Oligo Opalin_2,Oligo Opalin_2,LIGER 63-64,CS202002012_105,,RNAseq 100 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_63|CS202002012_64 -VLMC,VLMC,LIGER 66-68,CS202002012_106,VLMC,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_66|CS202002012_67|CS202002012_68 -,All cells,LIGER 01-71,CS202002012_107,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_1|CS202002012_2|CS202002012_3|CS202002012_4|CS202002012_5|CS202002012_6|CS202002012_7|CS202002012_8|CS202002012_9|CS202002012_10|CS202002012_11|CS202002012_12|CS202002012_13|CS202002012_14|CS202002012_15|CS202002012_16|CS202002012_17|CS202002012_18|CS202002012_19|CS202002012_20|CS202002012_21|CS202002012_22|CS202002012_23|CS202002012_24|CS202002012_25|CS202002012_26|CS202002012_27|CS202002012_28|CS202002012_29|CS202002012_30|CS202002012_31|CS202002012_32|CS202002012_33|CS202002012_34|CS202002012_35|CS202002012_36|CS202002012_37|CS202002012_38|CS202002012_39|CS202002012_40|CS202002012_41|CS202002012_42|CS202002012_43|CS202002012_44|CS202002012_45|CS202002012_46|CS202002012_47|CS202002012_48|CS202002012_49|CS202002012_50|CS202002012_51|CS202002012_52|CS202002012_53|CS202002012_54|CS202002012_55|CS202002012_56|CS202002012_57|CS202002012_58|CS202002012_59|CS202002012_60|CS202002012_61|CS202002012_62|CS202002012_63|CS202002012_64|CS202002012_65|CS202002012_66|CS202002012_67|CS202002012_68|CS202002012_69|CS202002012_70|CS202002012_71 \ No newline at end of file +cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions,cell_type_card +L2/3 IT (it_0),L2/3 IT (it_0),LIGER 01,CS202002012_1,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +L2/3 IT (it_10),L2/3 IT (it_10),LIGER 02,CS202002012_2,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +L2/3 IT (it_5),L2/3 IT (it_5),LIGER 03,CS202002012_3,,RNAseq 060 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +L2/3 IT (it_7),L2/3 IT (it_7),LIGER 04,CS202002012_4,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +L2/3 IT (it_9),L2/3 IT (it_9),LIGER 05,CS202002012_5,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +L4/5 IT (it_1),L4/5 IT (it_1),LIGER 06,CS202002012_6,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +L4/5 IT (it_2),L4/5 IT (it_2),LIGER 07,CS202002012_7,,RNAseq 062 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +L4/5 IT (it_8),L4/5 IT (it_8),LIGER 08,CS202002012_8,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +L5 IT (it_3),L5 IT (it_3),LIGER 09,CS202002012_9,,RNAseq 064 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +L5 IT (it_6),L5 IT (it_6),LIGER 10,CS202002012_10,,RNAseq 063 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +L6 IT (it_4),L6 IT (it_4),LIGER 11,CS202002012_11,L6 IT,RNAseq 067-069 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +L5 ET (non_it_11),L5 ET (non_it_11),LIGER 12,CS202002012_12,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +L5 ET (non_it_12),L5 ET (non_it_12),LIGER 13,CS202002012_13,,RNAseq 070 in CCN202002013|L5 ET (MY-projecting),Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +L5 ET (non_it_4),L5 ET (non_it_4),LIGER 14,CS202002012_14,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +L5 ET (non_it_9),L5 ET (non_it_9),LIGER 15,CS202002012_15,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +L6 CT Cpa6 (non_it_0),L6 CT Cpa6 (non_it_0),LIGER 16,CS202002012_16,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +L6 CT Cpa6 (non_it_1),L6 CT Cpa6 (non_it_1),LIGER 17,CS202002012_17,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +L6 CT Cpa6 (non_it_10),L6 CT Cpa6 (non_it_10),LIGER 18,CS202002012_18,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +L6 CT Cpa6 (non_it_5),L6 CT Cpa6 (non_it_5),LIGER 19,CS202002012_19,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +L6 CT Cpa6 (non_it_8),L6 CT Cpa6 (non_it_8),LIGER 20,CS202002012_20,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +L6 CT Pou3f2 (non_it_2),L6 CT Pou3f2 (non_it_2),LIGER 21,CS202002012_21,,RNAseq 078 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +L6b Ror1 (non_it_7),L6b Ror1 (non_it_7),LIGER 22,CS202002012_22,L6b,RNAseq 084 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +L5/6 NP (non_it_3),L5/6 NP (non_it_3),LIGER 23,CS202002012_23,,RNAseq 088 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +L5/6 NP (non_it_6),L5/6 NP (non_it_6),LIGER 24,CS202002012_24,,RNAseq 087 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Pvalb Reln (mge_0),Pvalb Reln (mge_0),LIGER 25,CS202002012_25,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Pvalb Calb1 (mge_1),Pvalb Calb1 (mge_1),LIGER 26,CS202002012_26,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Pvalb Gabrg1 (mge_10),Pvalb Gabrg1 (mge_10),LIGER 27,CS202002012_27,,RNAseq 048 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Pvalb Il1rapl2 (mge_4),Pvalb Il1rapl2 (mge_4),LIGER 28,CS202002012_28,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Pvalb Gpr149 (mge_9),Pvalb Gpr149 (mge_9),LIGER 29,CS202002012_29,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Pvalb Vipr2 (mge_12),Pvalb Vipr2 (mge_12),LIGER 30,CS202002012_30,Chandelier,RNAseq 056-057 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Sst Pvalb Calb2 (mge_6),Sst Pvalb Calb2 (mge_6),LIGER 31,CS202002012_31,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Sst C1ql3 (mge_13),Sst C1ql3 (mge_13),LIGER 32,CS202002012_32,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Sst Calb2 (mge_14),Sst Calb2 (mge_14),LIGER 33,CS202002012_33,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Sst Hpse (mge_2),Sst Hpse (mge_2),LIGER 34,CS202002012_34,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Sst Myh8 (mge_3),Sst Myh8 (mge_3),LIGER 35,CS202002012_35,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Sst C1ql3 (mge_5),Sst C1ql3 (mge_5),LIGER 36,CS202002012_36,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Sst Crhr2 (mge_7),Sst Crhr2 (mge_7),LIGER 37,CS202002012_37,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Sst Myh8 (mge_8),Sst Myh8 (mge_8),LIGER 38,CS202002012_38,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Sst Chodl (mge_11),Sst Chodl (mge_11),LIGER 39,CS202002012_39,Sst Chodl,RNAseq 028 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Vip Chat (cge_15),Vip Chat (cge_15),LIGER 40,CS202002012_40,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Vip Chat (cge_3),Vip Chat (cge_3),LIGER 41,CS202002012_41,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Vip Chat (cge_7),Vip Chat (cge_7),LIGER 42,CS202002012_42,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Vip Chat (cge_10),Vip Chat (cge_10),LIGER 43,CS202002012_43,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Vip Serpinf1 (cge_11),Vip Serpinf1 (cge_11),LIGER 44,CS202002012_44,,RNAseq 015-017 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Vip Gpc3 (cge_9),Vip Gpc3 (cge_9),LIGER 45,CS202002012_45,,RNAseq 019 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Vip Igfbp6 (cge_6),Vip Igfbp6 (cge_6),LIGER 46,CS202002012_46,,RNAseq 026-027 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Vip Htr1f (cge_2),Vip Htr1f (cge_2),LIGER 47,CS202002012_47,,RNAseq 018 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Vip Mybpc1 (cge_4),Vip Mybpc1 (cge_4),LIGER 48,CS202002012_48,,"RNAseq 021-022, 024 in CCN202002013",Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Sncg Npy2r (cge_8),Sncg Npy2r (cge_8),LIGER 49,CS202002012_49,,RNAseq 013 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Sncg Slc17a8 (cge_13),Sncg Slc17a8 (cge_13),LIGER 50,CS202002012_50,,RNAseq 010 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Lamp5 Lhx6 (cge_14),Lamp5 Lhx6 (cge_14),LIGER 51,CS202002012_51,Lamp5 Lhx6,RNAseq 008 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Lamp5 Slc35d3 (cge_0),Lamp5 Slc35d3 (cge_0),LIGER 52,CS202002012_52,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Lamp5 Slc35d3 (cge_16),Lamp5 Slc35d3 (cge_16),LIGER 53,CS202002012_53,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Lamp5 Egln3_3 (cge_5),Lamp5 Egln3_3 (cge_5),LIGER 54,CS202002012_54,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Lamp5 Pdlim5_2 (cge_1),Lamp5 Pdlim5_2 (cge_1),LIGER 55,CS202002012_55,,RNAseq 006 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Lamp5 Pax6 (cge_12),Lamp5 Pax6 (cge_12),LIGER 56,CS202002012_56,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Astro_Top2a (nn_14),Astro_Top2a (nn_14),LIGER 57,CS202002012_57,,RNAseq 092 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Astro Aqp4_Gfap (nn_6),Astro Aqp4_Gfap (nn_6),LIGER 58,CS202002012_58,,RNAseq 093 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Astro Aqp4_Slc7a10 (nn_1),Astro Aqp4_Slc7a10 (nn_1),LIGER 59,CS202002012_59,,RNAseq 094 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +OPC Pdgfra (nn_3),OPC Pdgfra (nn_3),LIGER 60,CS202002012_60,OPC,RNAseq 091 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Oligo Enpp6_2 (nn_8),Oligo Enpp6_2 (nn_8),LIGER 61,CS202002012_61,,RNAseq 095 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Oligo Opalin_1 (nn_4),Oligo Opalin_1 (nn_4),LIGER 62,CS202002012_62,,RNAseq 099 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Oligo Opalin_2 (nn_0),Oligo Opalin_2 (nn_0),LIGER 63,CS202002012_63,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Oligo Opalin_2 (nn_11),Oligo Opalin_2 (nn_11),LIGER 64,CS202002012_64,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Endo (nn_5),Endo (nn_5),LIGER 65,CS202002012_65,Endothelial,RNAseq 103 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +VLMC_2 (nn_7),VLMC_2 (nn_7),LIGER 66,CS202002012_66,,RNAseq 105 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +VLMC_3 (nn_12),VLMC_3 (nn_12),LIGER 67,CS202002012_67,,RNAseq 106 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +VLMC_5 (nn_10),VLMC_5 (nn_10),LIGER 68,CS202002012_68,,RNAseq 108 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +SMC (nn_9),SMC (nn_9),LIGER 69,CS202002012_69,SMC,RNAseq 111 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Micro (nn_2),Micro (nn_2),LIGER 70,CS202002012_70,Microglia,RNAseq 113 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +PVM_1 (nn_13),PVM_1 (nn_13),LIGER 71,CS202002012_71,PVM,RNAseq 114 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,,No +Glutamatergic,Glutamatergic,LIGER 01-24,CS202002012_72,Neuronal: Glutamatergic,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_1|CS202002012_2|CS202002012_3|CS202002012_4|CS202002012_5|CS202002012_6|CS202002012_7|CS202002012_8|CS202002012_9|CS202002012_10|CS202002012_11|CS202002012_12|CS202002012_13|CS202002012_14|CS202002012_15|CS202002012_16|CS202002012_17|CS202002012_18|CS202002012_19|CS202002012_20|CS202002012_21|CS202002012_22|CS202002012_23|CS202002012_24,No +IT projecting,IT projecting,LIGER 01-11,CS202002012_73,IT projecting,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_1|CS202002012_2|CS202002012_3|CS202002012_4|CS202002012_5|CS202002012_6|CS202002012_7|CS202002012_8|CS202002012_9|CS202002012_10|CS202002012_11,No +Non-IT projecting,Non-IT projecting,LIGER 12-24,CS202002012_74,Non-IT projecting,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_12|CS202002012_13|CS202002012_14|CS202002012_15|CS202002012_16|CS202002012_17|CS202002012_18|CS202002012_19|CS202002012_20|CS202002012_21|CS202002012_22|CS202002012_23|CS202002012_24,No +GABAergic,GABAergic,LIGER 25-56,CS202002012_75,Neuronal: GABAergic,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_25|CS202002012_26|CS202002012_27|CS202002012_28|CS202002012_29|CS202002012_30|CS202002012_31|CS202002012_32|CS202002012_33|CS202002012_34|CS202002012_35|CS202002012_36|CS202002012_37|CS202002012_38|CS202002012_39|CS202002012_40|CS202002012_41|CS202002012_42|CS202002012_43|CS202002012_44|CS202002012_45|CS202002012_46|CS202002012_47|CS202002012_48|CS202002012_49|CS202002012_50|CS202002012_51|CS202002012_52|CS202002012_53|CS202002012_54|CS202002012_55|CS202002012_56,No +CGE/PoA,CGE/PoA,LIGER 25-39,CS202002012_76,CGE/PoA,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_25|CS202002012_26|CS202002012_27|CS202002012_28|CS202002012_29|CS202002012_30|CS202002012_31|CS202002012_32|CS202002012_33|CS202002012_34|CS202002012_35|CS202002012_36|CS202002012_37|CS202002012_38|CS202002012_39,No +MGE,MGE,LIGER 40-56,CS202002012_77,MGE,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_40|CS202002012_41|CS202002012_42|CS202002012_43|CS202002012_44|CS202002012_45|CS202002012_46|CS202002012_47|CS202002012_48|CS202002012_49|CS202002012_50|CS202002012_51|CS202002012_52|CS202002012_53|CS202002012_54|CS202002012_55|CS202002012_56,No +L2/3 IT,L2/3 IT,LIGER 01-05,CS202002012_78,L2/3 IT,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_1|CS202002012_2|CS202002012_3|CS202002012_4|CS202002012_5,No +L2/3 IT_1,L2/3 IT_1,"LIGER 01, 03, 05",CS202002012_79,,RNAseq 058 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_1|CS202002012_3|CS202002012_5,No +L4/5 IT,L4/5 IT,LIGER 06-08,CS202002012_80,L4/5 IT,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_6|CS202002012_7|CS202002012_8,No +L4/5 IT_1,L4/5 IT_1,"LIGER 02, 04, 06, 08",CS202002012_81,,RNAseq 061 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_2|CS202002012_4|CS202002012_6|CS202002012_8,No +L5 IT,L5 IT,LIGER 09-10,CS202002012_82,L5 IT,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_9|CS202002012_10,No +L5 ET,L5 ET,LIGER 12-15,CS202002012_83,L5 ET,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_12|CS202002012_13|CS202002012_14|CS202002012_15,No +L5 ET_2,L5 ET_2,"LIGER 12, 14-15",CS202002012_84,,RNAseq 071 in CCN202002013|L5 ET (Non-MY-projecting),Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_12|CS202002012_14|CS202002012_15,No +L5/6 NP,L5/6 NP,LIGER 23-24,CS202002012_85,L5/6 NP,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_23|CS202002012_24,No +L6 CT,L6 CT,LIGER 16-21,CS202002012_86,L6 CT,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_16|CS202002012_17|CS202002012_18|CS202002012_19|CS202002012_20|CS202002012_21,No +L6 CT Cpa6,L6 CT Cpa6,LIGER 16-20,CS202002012_87,,RNAseq 076 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_16|CS202002012_17|CS202002012_18|CS202002012_19|CS202002012_20,No +Pvalb,Pvalb,LIGER 25-30,CS202002012_88,Pvalb,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_25|CS202002012_26|CS202002012_27|CS202002012_28|CS202002012_29|CS202002012_30,No +Pvalb Reln,Pvalb Reln,"LIGER 25, 28",CS202002012_89,,RNAseq 054 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_25|CS202002012_28,No +Pvalb Calb1,Pvalb Calb1,"LIGER 26, 29",CS202002012_90,,RNAseq 052-053 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_26|CS202002012_29,No +Sst,Sst,LIGER 31-38,CS202002012_91,Sst,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_31|CS202002012_32|CS202002012_33|CS202002012_34|CS202002012_35|CS202002012_36|CS202002012_37|CS202002012_38,No +Sst Calb2,Sst Calb2,"LIGER 31, 33-34",CS202002012_92,,RNAseq 039 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_31|CS202002012_33|CS202002012_34,No +Sst Crhr2_1,Sst Crhr2_1,"LIGER 32, 36-37",CS202002012_93,,RNAseq 036 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_32|CS202002012_36|CS202002012_37,No +Sst Myh8,Sst Myh8,"LIGER 35, 38",CS202002012_94,,RNAseq 030-032 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_35|CS202002012_38,No +Vip,Vip,LIGER 40-48,CS202002012_95,Vip,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_40|CS202002012_41|CS202002012_42|CS202002012_43|CS202002012_44|CS202002012_45|CS202002012_46|CS202002012_47|CS202002012_48,No +Vip Chat,Vip Chat,LIGER 41-43,CS202002012_96,,"RNAseq 023, 025 in CCN202002013",Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_41|CS202002012_42|CS202002012_43,No +Sncg,Sncg,LIGER 49-50,CS202002012_97,Sncg,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_49|CS202002012_50,No +Lamp5,Lamp5,LIGER 51-56,CS202002012_98,Lamp5,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_51|CS202002012_52|CS202002012_53|CS202002012_54|CS202002012_55|CS202002012_56,No +Lamp5 Slc35d3,Lamp5 Slc35d3,"LIGER 40, 52-53",CS202002012_99,,RNAseq 007 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_40|CS202002012_52|CS202002012_53,No +Lamp5 Pax6,Lamp5 Pax6,"LIGER 54, 56",CS202002012_100,,RNAseq 001 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_54|CS202002012_56,No +Non-neuronal,Non-neuronal,LIGER 57-64,CS202002012_101,Non-neuronal,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_57|CS202002012_58|CS202002012_59|CS202002012_60|CS202002012_61|CS202002012_62|CS202002012_63|CS202002012_64,No +Non-neural,Non-neural,LIGER 65-71,CS202002012_102,Non-neural,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_65|CS202002012_66|CS202002012_67|CS202002012_68|CS202002012_69|CS202002012_70|CS202002012_71,No +Astrocyte,Astrocyte,LIGER 57-59,CS202002012_103,Astrocyte,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_57|CS202002012_58|CS202002012_59,No +Oligodendrocyte,Oligodendrocyte,LIGER 61-64,CS202002012_104,Oligodendrocyte,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_61|CS202002012_62|CS202002012_63|CS202002012_64,No +Oligo Opalin_2,Oligo Opalin_2,LIGER 63-64,CS202002012_105,,RNAseq 100 in CCN202002013,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_63|CS202002012_64,No +VLMC,VLMC,LIGER 66-68,CS202002012_106,VLMC,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_66|CS202002012_67|CS202002012_68,No +All cells,All cells,LIGER 01-71,CS202002012_107,,,Josh Welch,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002012,Mouse,RNAseq|ATACseq|DNAm,CS202002012_1|CS202002012_2|CS202002012_3|CS202002012_4|CS202002012_5|CS202002012_6|CS202002012_7|CS202002012_8|CS202002012_9|CS202002012_10|CS202002012_11|CS202002012_12|CS202002012_13|CS202002012_14|CS202002012_15|CS202002012_16|CS202002012_17|CS202002012_18|CS202002012_19|CS202002012_20|CS202002012_21|CS202002012_22|CS202002012_23|CS202002012_24|CS202002012_25|CS202002012_26|CS202002012_27|CS202002012_28|CS202002012_29|CS202002012_30|CS202002012_31|CS202002012_32|CS202002012_33|CS202002012_34|CS202002012_35|CS202002012_36|CS202002012_37|CS202002012_38|CS202002012_39|CS202002012_40|CS202002012_41|CS202002012_42|CS202002012_43|CS202002012_44|CS202002012_45|CS202002012_46|CS202002012_47|CS202002012_48|CS202002012_49|CS202002012_50|CS202002012_51|CS202002012_52|CS202002012_53|CS202002012_54|CS202002012_55|CS202002012_56|CS202002012_57|CS202002012_58|CS202002012_59|CS202002012_60|CS202002012_61|CS202002012_62|CS202002012_63|CS202002012_64|CS202002012_65|CS202002012_66|CS202002012_67|CS202002012_68|CS202002012_69|CS202002012_70|CS202002012_71,No \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202002013.csv b/src/dendrograms/nomenclature_table_CCN202002013.csv index 61c0af0c..fce329d1 100644 --- a/src/dendrograms/nomenclature_table_CCN202002013.csv +++ b/src/dendrograms/nomenclature_table_CCN202002013.csv @@ -1,258 +1,258 @@ -cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions -Lamp5 Pax6,Lamp5 Pax6,RNAseq 001,CS202002013_1,,Lamp5_4,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Lamp5 Egln3_1,Lamp5 Egln3_1,RNAseq 002,CS202002013_2,,Sncg_4|Alpha7 cell,Zizhen Yao|Nikolas Jorstad|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Lamp5 Egln3_2,Lamp5 Egln3_2,RNAseq 003,CS202002013_3,,Canopy cell,Zizhen Yao|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Lamp5 Egln3_3,Lamp5 Egln3_3,RNAseq 004,CS202002013_4,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Lamp5 Pdlim5_1,Lamp5 Pdlim5_1,RNAseq 005,CS202002013_5,,Lamp5_1,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Lamp5 Pdlim5_2,Lamp5 Pdlim5_2,RNAseq 006,CS202002013_6,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Lamp5 Slc35d3,Lamp5 Slc35d3,RNAseq 007,CS202002013_7,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Lamp5 Lhx6,Lamp5 Lhx6,RNAseq 008,CS202002013_8,Lamp5 Lhx6,Lamp5_3|L5/6 neurogliaform cell,Zizhen Yao||Nikolas Jorstad|Federico Scala,10.1101/2020.02.29.970558||10.1101/2020.03.31.016972|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Sncg Col14a1,Sncg Col14a1,RNAseq 009,CS202002013_9,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Sncg Slc17a8,Sncg Slc17a8,RNAseq 010,CS202002013_10,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Sncg Calb1_1,Sncg Calb1_1,RNAseq 011,CS202002013_11,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Sncg Calb1_2,Sncg Calb1_2,RNAseq 012,CS202002013_12,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Sncg Npy2r,Sncg Npy2r,RNAseq 013,CS202002013_13,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Vip Sncg,Vip Sncg,RNAseq 014,CS202002013_14,,Small CCK basket cell,Zizhen Yao|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Vip Serpinf1_1,Vip Serpinf1_1,RNAseq 015,CS202002013_15,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Vip Serpinf1_2,Vip Serpinf1_2,RNAseq 016,CS202002013_16,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Vip Serpinf1_3,Vip Serpinf1_3,RNAseq 017,CS202002013_17,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Vip Htr1f,Vip Htr1f,RNAseq 018,CS202002013_18,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Vip Gpc3,Vip Gpc3,RNAseq 019,CS202002013_19,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Vip C1ql1,Vip C1ql1,RNAseq 020,CS202002013_20,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Vip Mybpc1_2,Vip Mybpc1_2,RNAseq 021,CS202002013_21,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Vip Mybpc1_1,Vip Mybpc1_1,RNAseq 022,CS202002013_22,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Vip Chat_1,Vip Chat_1,RNAseq 023,CS202002013_23,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Vip Mybpc1_3,Vip Mybpc1_3,RNAseq 024,CS202002013_24,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Vip Chat_2,Vip Chat_2,RNAseq 025,CS202002013_25,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Vip Igfbp6_1,Vip Igfbp6_1,RNAseq 026,CS202002013_26,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Vip Igfbp6_2,Vip Igfbp6_2,RNAseq 027,CS202002013_27,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Sst Chodl,Sst Chodl,RNAseq 028,CS202002013_28,Sst Chodl,Sst Chodl|Long-projecting SST cell,Zizhen Yao||Nikolas Jorstad|Federico Scala,10.1101/2020.02.29.970558||10.1101/2020.03.31.016972|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Sst Penk,Sst Penk,RNAseq 029,CS202002013_29,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Sst Myh8_1,Sst Myh8_1,RNAseq 030,CS202002013_30,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Sst Myh8_2,Sst Myh8_2,RNAseq 031,CS202002013_31,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Sst Myh8_3,Sst Myh8_3,RNAseq 032,CS202002013_32,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Sst Htr1a,Sst Htr1a,RNAseq 033,CS202002013_33,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Sst Etv1,Sst Etv1,RNAseq 034,CS202002013_34,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Sst Pvalb Etv1,Sst Pvalb Etv1,RNAseq 035,CS202002013_35,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Sst Crhr2_1,Sst Crhr2_1,RNAseq 036,CS202002013_36,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Sst Crhr2_2,Sst Crhr2_2,RNAseq 037,CS202002013_37,,Sst_4,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Sst Hpse,Sst Hpse,RNAseq 038,CS202002013_38,,L4 SST cell,Zizhen Yao|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Sst Calb2,Sst Calb2,RNAseq 039,CS202002013_39,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Sst Pappa,Sst Pappa,RNAseq 040,CS202002013_40,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Sst Pvalb Calb2,Sst Pvalb Calb2,RNAseq 041,CS202002013_41,,L2/3 PV-like cell,Zizhen Yao|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Sst C1ql3_1,Sst C1ql3_1,RNAseq 042,CS202002013_42,,Sst_5,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Sst C1ql3_2,Sst C1ql3_2,RNAseq 043,CS202002013_43,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq, -Sst 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cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_31|CS202002013_32 -,,RNAseq 034-041,CS202002013_158,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_34|CS202002013_35|CS202002013_36|CS202002013_37|CS202002013_38|CS202002013_39|CS202002013_40|CS202002013_41 -L5 T Martinotti cell,L5 T Martinotti cell,RNAseq 034-035,CS202002013_159,,L5 T Martinotti cell,Zizhen Yao|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_34|CS202002013_35 -,,RNAseq 036-041,CS202002013_160,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_36|CS202002013_37|CS202002013_38|CS202002013_39|CS202002013_40|CS202002013_41 -L5 non-Martinotti cell,L5 non-Martinotti cell,RNAseq 036-037,CS202002013_161,,L5 non-Martinotti cell,Zizhen Yao|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_36|CS202002013_37 -,,RNAseq 038-041,CS202002013_162,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_38|CS202002013_39|CS202002013_40|CS202002013_41 -,,RNAseq 038-040,CS202002013_163,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_38|CS202002013_39|CS202002013_40 -L2/3/5 fan Martinotti cell,L2/3/5 fan Martinotti cell,RNAseq 039-040,CS202002013_164,,L2/3/5 fan Martinotti cell,Zizhen Yao|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_39|CS202002013_40 -L5/6 non-Martinotti cell,L5/6 non-Martinotti cell,RNAseq 042-045,CS202002013_165,,L5/6 non-Martinotti cell,Zizhen Yao|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_42|CS202002013_43|CS202002013_44|CS202002013_45 -,,RNAseq 042-043,CS202002013_166,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_42|CS202002013_43 -,,RNAseq 044-045,CS202002013_167,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_44|CS202002013_45 -,,RNAseq 046-057,CS202002013_168,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_46|CS202002013_47|CS202002013_48|CS202002013_49|CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53|CS202002013_54|CS202002013_55|CS202002013_56|CS202002013_57 -,,RNAseq 046-048,CS202002013_169,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_46|CS202002013_47|CS202002013_48 -L6 Th+ SST/PV cell,L6 Th+ SST/PV cell,RNAseq 046-047,CS202002013_170,,L6 Th+ SST/PV cell,Zizhen Yao|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_46|CS202002013_47 -,,RNAseq 049-057,CS202002013_171,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_49|CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53|CS202002013_54|CS202002013_55|CS202002013_56|CS202002013_57 -,,RNAseq 049-055,CS202002013_172,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_49|CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53|CS202002013_54|CS202002013_55 -,,RNAseq 050-055,CS202002013_173,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53|CS202002013_54|CS202002013_55 -,,RNAseq 051-055,CS202002013_174,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_51|CS202002013_52|CS202002013_53|CS202002013_54|CS202002013_55 -,,RNAseq 051-053,CS202002013_175,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_51|CS202002013_52|CS202002013_53 -,,RNAseq 052-053,CS202002013_176,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_52|CS202002013_53 -Upper FS Basket cell,Upper FS Basket cell,RNAseq 054-055,CS202002013_177,,Upper FS Basket cell,Zizhen Yao|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_54|CS202002013_55 -Chandelier,Chandelier,RNAseq 056-057,CS202002013_178,Chandelier,Chandelier cell,Zizhen Yao||Federico Scala,10.1101/2020.02.29.970558||10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_56|CS202002013_57 -Glutamatergic,Glutamatergic,RNAseq 058-088,CS202002013_179,Neuronal: Glutamatergic,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_58|CS202002013_59|CS202002013_60|CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66|CS202002013_67|CS202002013_68|CS202002013_69|CS202002013_70|CS202002013_71|CS202002013_72|CS202002013_73|CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80|CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85|CS202002013_86|CS202002013_87|CS202002013_88 -,,RNAseq 058-085,CS202002013_180,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_58|CS202002013_59|CS202002013_60|CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66|CS202002013_67|CS202002013_68|CS202002013_69|CS202002013_70|CS202002013_71|CS202002013_72|CS202002013_73|CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80|CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85 -,,RNAseq 058-073,CS202002013_181,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_58|CS202002013_59|CS202002013_60|CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66|CS202002013_67|CS202002013_68|CS202002013_69|CS202002013_70|CS202002013_71|CS202002013_72|CS202002013_73 -IT projecting,IT projecting,RNAseq 058-069,CS202002013_182,IT projecting,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_58|CS202002013_59|CS202002013_60|CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66|CS202002013_67|CS202002013_68|CS202002013_69 -L2/3 IT,L2/3 IT,RNAseq 058-060,CS202002013_183,L2/3 IT,L2/3 IT,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_58|CS202002013_59|CS202002013_60 -,,RNAseq 058-059,CS202002013_184,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_58|CS202002013_59 -,,RNAseq 061-069,CS202002013_185,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66|CS202002013_67|CS202002013_68|CS202002013_69 -,,RNAseq 061-068,CS202002013_186,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66|CS202002013_67|CS202002013_68 -,,RNAseq 061-066,CS202002013_187,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66 -L4,L4,RNAseq 061-062,CS202002013_188,L4/5 IT,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_61|CS202002013_62 -L5 IT,L5 IT,RNAseq 063-066,CS202002013_189,L5 IT,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66 -L5 IT_C2,L5 IT_C2,RNAseq 063-064,CS202002013_190,,L5 IT_2,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_63|CS202002013_64 -,,RNAseq 065-066,CS202002013_191,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_65|CS202002013_66 -L6 IT,L6 IT,RNAseq 067-068,CS202002013_192,L6 IT,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_67|CS202002013_68 -L5 ET,L5 ET,RNAseq 070-073,CS202002013_193,L5 ET,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_70|CS202002013_71|CS202002013_72|CS202002013_73 -L5 ET (Non-MY-projecting),L5 ET (Non-MY-projecting),RNAseq 071-073,CS202002013_194,,L5 ET (Non-MY-projecting)|Non-MY-projecting L5 ET,Zizhen Yao|Bosiljka Tasic|Federico Scala,10.1101/2020.02.29.970558|10.1038/s41586-018-0654-5|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_71|CS202002013_72|CS202002013_73 -,,RNAseq 071-072,CS202002013_195,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_71|CS202002013_72 -,,RNAseq 074-085,CS202002013_196,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80|CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85 -L6 CT,L6 CT,RNAseq 074-080,CS202002013_197,L6 CT,Corticothalamic|VAL/VM Projecting,Zizhen Yao|||Federico Scala,10.1101/2020.02.29.970558|||10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80 -,,RNAseq 075-080,CS202002013_198,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80 -,,RNAseq 075-078,CS202002013_199,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78 -,,RNAseq 076-078,CS202002013_200,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_76|CS202002013_77|CS202002013_78 -,,RNAseq 077-078,CS202002013_201,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_77|CS202002013_78 -,,RNAseq 079-080,CS202002013_202,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_79|CS202002013_80 -L6b,L6b,RNAseq 081-085,CS202002013_203,L6b,L6b|L6b subplate,Zizhen Yao||Nikolas Jorstad|Federico Scala,10.1101/2020.02.29.970558||10.1101/2020.03.31.016972|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85 -,,RNAseq 081-084,CS202002013_204,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84 -,,RNAseq 082-084,CS202002013_205,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_82|CS202002013_83|CS202002013_84 -,,RNAseq 082-083,CS202002013_206,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_82|CS202002013_83 -L5/6 NP,L5/6 NP,RNAseq 086-088,CS202002013_207,L5/6 NP,L5/6 NP|Near-projecting,Zizhen Yao||Nikolas Jorstad|Federico Scala,10.1101/2020.02.29.970558||10.1101/2020.03.31.016972|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_86|CS202002013_87|CS202002013_88 -,,RNAseq 086-087,CS202002013_208,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_86|CS202002013_87 -Meis2,Meis2,RNAseq 089-090,CS202002013_209,Meis2,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_89|CS202002013_90 -Astro,Astro,RNAseq 092-094,CS202002013_210,Astrocyte,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_92|CS202002013_93|CS202002013_94 -Astro_C1,Astro_C1,RNAseq 093-094,CS202002013_211,,Astro_1,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_93|CS202002013_94 -Oligo,Oligo,RNAseq 095-102,CS202002013_212,Oligodendrocyte,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_95|CS202002013_96|CS202002013_97|CS202002013_98|CS202002013_99|CS202002013_100|CS202002013_101|CS202002013_102 -,,RNAseq 095-098,CS202002013_213,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_95|CS202002013_96|CS202002013_97|CS202002013_98 -,,RNAseq 095-096,CS202002013_214,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_95|CS202002013_96 -,,RNAseq 097-098,CS202002013_215,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_97|CS202002013_98 -,,RNAseq 099-102,CS202002013_216,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_99|CS202002013_100|CS202002013_101|CS202002013_102 -,,RNAseq 099-100,CS202002013_217,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_99|CS202002013_100 -,,RNAseq 101-102,CS202002013_218,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_101|CS202002013_102 -Non-neural,Non-neural,RNAseq 103-116,CS202002013_219,Non-neural,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_103|CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_108|CS202002013_109|CS202002013_110|CS202002013_111|CS202002013_112|CS202002013_113|CS202002013_114|CS202002013_115|CS202002013_116 -,,RNAseq 103-112,CS202002013_220,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_103|CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_108|CS202002013_109|CS202002013_110|CS202002013_111|CS202002013_112 -,,RNAseq 104-112,CS202002013_221,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_108|CS202002013_109|CS202002013_110|CS202002013_111|CS202002013_112 -VLMC,VLMC,RNAseq 104-110,CS202002013_222,VLMC,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_108|CS202002013_109|CS202002013_110 -,,RNAseq 104-107,CS202002013_223,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107 -,,RNAseq 104-105,CS202002013_224,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_104|CS202002013_105 -,,RNAseq 106-107,CS202002013_225,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_106|CS202002013_107 -,,RNAseq 108-110,CS202002013_226,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_108|CS202002013_109|CS202002013_110 -,,RNAseq 108-109,CS202002013_227,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_108|CS202002013_109 -,,RNAseq 111-112,CS202002013_228,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_111|CS202002013_112 -Micro-PVM,Micro-PVM,RNAseq 113-116,CS202002013_229,Microglia-PVM,Microglia/PVM,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_113|CS202002013_114|CS202002013_115|CS202002013_116 -,,RNAseq 113-115,CS202002013_230,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_113|CS202002013_114|CS202002013_115 -,,RNAseq 114-115,CS202002013_231,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_114|CS202002013_115 -Sst,Sst,RNAseq 028-047,CS202002013_232,Sst,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_28|CS202002013_29|CS202002013_30|CS202002013_31|CS202002013_32|CS202002013_33|CS202002013_34|CS202002013_35|CS202002013_36|CS202002013_37|CS202002013_38|CS202002013_39|CS202002013_40|CS202002013_41|CS202002013_42|CS202002013_43|CS202002013_44|CS202002013_45|CS202002013_46|CS202002013_47 -Pvalb,Pvalb,RNAseq 048-057,CS202002013_233,Pvalb,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_48|CS202002013_49|CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53|CS202002013_54|CS202002013_55|CS202002013_56|CS202002013_57 -Non-IT projecting,Non-IT projecting,RNAseq 070-088,CS202002013_234,Non-IT projecting,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_70|CS202002013_71|CS202002013_72|CS202002013_73|CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80|CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85|CS202002013_86|CS202002013_87|CS202002013_88 -Non-Neuronal,Non-Neuronal,RNAseq 091-102,CS202002013_235,Non-neuronal,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_91|CS202002013_92|CS202002013_93|CS202002013_94|CS202002013_95|CS202002013_96|CS202002013_97|CS202002013_98|CS202002013_99|CS202002013_100|CS202002013_101|CS202002013_102 -Oligo-OPC,Oligo-OPC,"RNAseq 091,095-102",CS202002013_236,Oligodendrocyte-OPC,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_91|CS202002013_95|CS202002013_96|CS202002013_97|CS202002013_98|CS202002013_99|CS202002013_100|CS202002013_101|CS202002013_102 -PVM,PVM,RNAseq 114-116,CS202002013_237,PVM,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_114|CS202002013_115|CS202002013_116 -Lamp5_C2,Lamp5_C2,RNAseq 006-007,CS202002013_238,,Lamp5_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_6|CS202002013_7 -Sncg_C3,Sncg_C3,RNAseq 011-013,CS202002013_239,,Sncg_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_11|CS202002013_12|CS202002013_13 -Sncg_C1,Sncg_C1,"RNAseq 014, 016",CS202002013_240,,Sncg_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_14|CS202002013_16 -Vip_C3,Vip_C3,"RNAseq 015, 019, 022",CS202002013_241,,Vip_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_15|CS202002013_19|CS202002013_22 -Vip_C2,Vip_C2,"RNAseq 017-018, 020-021",CS202002013_242,,Vip_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_17|CS202002013_18|CS202002013_20|CS202002013_21 -Vip_C1,Vip_C1,RNAseq 023-025,CS202002013_243,,Vip_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_23|CS202002013_24|CS202002013_25 -Sst_C2,Sst_C2,"RNAseq 029-030, 034",CS202002013_244,,Sst_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_29|CS202002013_30|CS202002013_34 -Sst_C3,Sst_C3,"RNAseq 035-036, 038-041",CS202002013_245,,Sst_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_35|CS202002013_36|CS202002013_38|CS202002013_39|CS202002013_40|CS202002013_41 -Sst_C6,Sst_C6,RNAseq 043-045,CS202002013_246,,Sst_6,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_43|CS202002013_44|CS202002013_45 -Pvalb_C1,Pvalb_C1,"RNAseq 046, 050-055",CS202002013_247,,Pvalb_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_46|CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53|CS202002013_54|CS202002013_55 -Pvalb_C2,Pvalb_C2,RNAseq 048-049,CS202002013_248,,Pvalb_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_48|CS202002013_49 -L5 IT_C1,L5 IT_C1,"RNAseq 061-062, 065",CS202002013_249,,L5 IT_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_61|CS202002013_62|CS202002013_65 -L6 IT_C2,L6 IT_C2,"RNAseq 066, 068",CS202002013_250,,L6 IT_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_66|CS202002013_68 -L5 ET_C1,L5 ET_C1,"RNAseq 070, 072-073",CS202002013_251,,L5 ET_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_70|CS202002013_72|CS202002013_73 -L6 CT_C1,L6 CT_C1,"RNAseq 075, 077-081",CS202002013_252,,L6 CT_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_75|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80|CS202002013_81 -Oligo_C2,Oligo_C2,"RNAseq 098, 110-112",CS202002013_253,,Oligo_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_98|CS202002013_110|CS202002013_111|CS202002013_112 -VLMC(i),VLMC(i),"RNAseq 104-107, 110",CS202002013_254,,VLMC(i),Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_110 -Large CCK basket cell,Large CCK basket cell,RNAseq 009-012,CS202002013_255,,Large CCK basket cell,Federico Scala,10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_9|CS202002013_10|CS202002013_11|CS202002013_12 -L5 T Martinotti cell,L5 T Martinotti cell,RNAseq 030-032,CS202002013_256,,L5 T Martinotti cell,Federico Scala,10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_30|CS202002013_31|CS202002013_32 -Lower FS Basket cell,Lower FS Basket cell,RNAseq 049-053,CS202002013_257,,Lower FS Basket cell,Federico Scala,10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_49|CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53 \ No newline at end of file +cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions,cell_type_card +Lamp5 Pax6,Lamp5 Pax6,RNAseq 001,CS202002013_1,,Lamp5_4,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Lamp5 Egln3_1,Lamp5 Egln3_1,RNAseq 002,CS202002013_2,,Sncg_4|Alpha7 cell,Zizhen Yao|Nikolas Jorstad|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Lamp5 Egln3_2,Lamp5 Egln3_2,RNAseq 003,CS202002013_3,,Canopy cell,Zizhen Yao|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Lamp5 Egln3_3,Lamp5 Egln3_3,RNAseq 004,CS202002013_4,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Lamp5 Pdlim5_1,Lamp5 Pdlim5_1,RNAseq 005,CS202002013_5,,Lamp5_1,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Lamp5 Pdlim5_2,Lamp5 Pdlim5_2,RNAseq 006,CS202002013_6,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Lamp5 Slc35d3,Lamp5 Slc35d3,RNAseq 007,CS202002013_7,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Lamp5 Lhx6,Lamp5 Lhx6,RNAseq 008,CS202002013_8,Lamp5 Lhx6,Lamp5_3|L5/6 neurogliaform cell,Zizhen Yao||Nikolas Jorstad|Federico Scala,10.1101/2020.02.29.970558||10.1101/2020.03.31.016972|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Sncg Col14a1,Sncg Col14a1,RNAseq 009,CS202002013_9,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Sncg Slc17a8,Sncg Slc17a8,RNAseq 010,CS202002013_10,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Sncg Calb1_1,Sncg Calb1_1,RNAseq 011,CS202002013_11,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Sncg Calb1_2,Sncg Calb1_2,RNAseq 012,CS202002013_12,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Sncg Npy2r,Sncg Npy2r,RNAseq 013,CS202002013_13,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Vip Sncg,Vip Sncg,RNAseq 014,CS202002013_14,,Small CCK basket cell,Zizhen Yao|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Vip Serpinf1_1,Vip Serpinf1_1,RNAseq 015,CS202002013_15,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Vip Serpinf1_2,Vip Serpinf1_2,RNAseq 016,CS202002013_16,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Vip Serpinf1_3,Vip Serpinf1_3,RNAseq 017,CS202002013_17,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Vip Htr1f,Vip Htr1f,RNAseq 018,CS202002013_18,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Vip Gpc3,Vip Gpc3,RNAseq 019,CS202002013_19,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Vip C1ql1,Vip C1ql1,RNAseq 020,CS202002013_20,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Vip Mybpc1_2,Vip Mybpc1_2,RNAseq 021,CS202002013_21,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Vip Mybpc1_1,Vip Mybpc1_1,RNAseq 022,CS202002013_22,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Vip Chat_1,Vip Chat_1,RNAseq 023,CS202002013_23,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Vip Mybpc1_3,Vip Mybpc1_3,RNAseq 024,CS202002013_24,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Vip Chat_2,Vip Chat_2,RNAseq 025,CS202002013_25,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Vip Igfbp6_1,Vip Igfbp6_1,RNAseq 026,CS202002013_26,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Vip Igfbp6_2,Vip Igfbp6_2,RNAseq 027,CS202002013_27,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Sst Chodl,Sst Chodl,RNAseq 028,CS202002013_28,Sst Chodl,Sst Chodl|Long-projecting SST cell,Zizhen Yao||Nikolas Jorstad|Federico Scala,10.1101/2020.02.29.970558||10.1101/2020.03.31.016972|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,"Cell Type,Subclass" +Sst Penk,Sst Penk,RNAseq 029,CS202002013_29,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Sst Myh8_1,Sst Myh8_1,RNAseq 030,CS202002013_30,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Sst Myh8_2,Sst Myh8_2,RNAseq 031,CS202002013_31,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Sst Myh8_3,Sst Myh8_3,RNAseq 032,CS202002013_32,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Sst Htr1a,Sst Htr1a,RNAseq 033,CS202002013_33,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Sst Etv1,Sst Etv1,RNAseq 034,CS202002013_34,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Sst Pvalb Etv1,Sst Pvalb Etv1,RNAseq 035,CS202002013_35,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Sst Crhr2_1,Sst Crhr2_1,RNAseq 036,CS202002013_36,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Sst Crhr2_2,Sst Crhr2_2,RNAseq 037,CS202002013_37,,Sst_4,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Sst Hpse,Sst Hpse,RNAseq 038,CS202002013_38,,L4 SST cell,Zizhen Yao|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Sst Calb2,Sst Calb2,RNAseq 039,CS202002013_39,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Sst Pappa,Sst Pappa,RNAseq 040,CS202002013_40,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Sst Pvalb Calb2,Sst Pvalb Calb2,RNAseq 041,CS202002013_41,,L2/3 PV-like cell,Zizhen Yao|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Sst C1ql3_1,Sst C1ql3_1,RNAseq 042,CS202002013_42,,Sst_5,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Sst C1ql3_2,Sst C1ql3_2,RNAseq 043,CS202002013_43,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Sst Tac2,Sst Tac2,RNAseq 044,CS202002013_44,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Sst Th_1,Sst Th_1,RNAseq 045,CS202002013_45,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Sst Th_2,Sst Th_2,RNAseq 046,CS202002013_46,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Sst Th_3,Sst Th_3,RNAseq 047,CS202002013_47,,Sst_7,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Pvalb Gabrg1,Pvalb Gabrg1,RNAseq 048,CS202002013_48,,L6 FS cell w/ large sag,Zizhen Yao|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Pvalb Egfem1,Pvalb Egfem1,RNAseq 049,CS202002013_49,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Pvalb Gpr149,Pvalb Gpr149,RNAseq 050,CS202002013_50,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Pvalb Kank4,Pvalb Kank4,RNAseq 051,CS202002013_51,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor 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063,CS202002013_63,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +L5 IT_2,L5 IT_2,RNAseq 064,CS202002013_64,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +L5 IT_3,L5 IT_3,RNAseq 065,CS202002013_65,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +L5 IT_4,L5 IT_4,RNAseq 066,CS202002013_66,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +L6 IT_1,L6 IT_1,RNAseq 067,CS202002013_67,,L6 IT_1,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +L6 IT_2,L6 IT_2,RNAseq 068,CS202002013_68,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +L6 IT Car3,L6 IT Car3,RNAseq 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+Oligo Opalin_4,Oligo Opalin_4,RNAseq 102,CS202002013_102,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +Endo,Endo,RNAseq 103,CS202002013_103,Endothelial,Endo,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,"Cell Type,Subclass" +VLMC_1,VLMC_1,RNAseq 104,CS202002013_104,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +VLMC_2,VLMC_2,RNAseq 105,CS202002013_105,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +VLMC_3,VLMC_3,RNAseq 106,CS202002013_106,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +VLMC_4,VLMC_4,RNAseq 107,CS202002013_107,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +VLMC_5,VLMC_5,RNAseq 108,CS202002013_108,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +VLMC_6,VLMC_6,RNAseq 109,CS202002013_109,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +VLMC_7,VLMC_7,RNAseq 110,CS202002013_110,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +SMC,SMC,RNAseq 111,CS202002013_111,SMC,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,"Cell Type,Subclass" +Peri,Peri,RNAseq 112,CS202002013_112,Pericyte,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,"Cell Type,Subclass" +Micro,Micro,RNAseq 113,CS202002013_113,Microglia,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type +PVM_1,PVM_1,RNAseq 114,CS202002013_114,,,Zizhen 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099-100,CS202002013_217,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_99|CS202002013_100,No +,,RNAseq 101-102,CS202002013_218,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_101|CS202002013_102,No +Non-neural,Non-neural,RNAseq 103-116,CS202002013_219,Non-neural,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_103|CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_108|CS202002013_109|CS202002013_110|CS202002013_111|CS202002013_112|CS202002013_113|CS202002013_114|CS202002013_115|CS202002013_116,Class +,,RNAseq 103-112,CS202002013_220,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor 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104-105,CS202002013_224,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_104|CS202002013_105,No +,,RNAseq 106-107,CS202002013_225,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_106|CS202002013_107,No +,,RNAseq 108-110,CS202002013_226,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_108|CS202002013_109|CS202002013_110,No +,,RNAseq 108-109,CS202002013_227,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_108|CS202002013_109,No +,,RNAseq 111-112,CS202002013_228,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_111|CS202002013_112,No +Micro-PVM,Micro-PVM,RNAseq 113-116,CS202002013_229,Microglia-PVM,Microglia/PVM,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_113|CS202002013_114|CS202002013_115|CS202002013_116,Subclass +,,RNAseq 113-115,CS202002013_230,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_113|CS202002013_114|CS202002013_115,No +,,RNAseq 114-115,CS202002013_231,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_114|CS202002013_115,No +Sst,Sst,RNAseq 029-047,CS202002013_232,Sst,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_29|CS202002013_30|CS202002013_31|CS202002013_32|CS202002013_33|CS202002013_34|CS202002013_35|CS202002013_36|CS202002013_37|CS202002013_38|CS202002013_39|CS202002013_40|CS202002013_41|CS202002013_42|CS202002013_43|CS202002013_44|CS202002013_45|CS202002013_46|CS202002013_47,Subclass +Pvalb,Pvalb,RNAseq 048-057,CS202002013_233,Pvalb,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_48|CS202002013_49|CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53|CS202002013_54|CS202002013_55|CS202002013_56|CS202002013_57,Subclass +Non-IT projecting,Non-IT projecting,RNAseq 070-088,CS202002013_234,Non-IT projecting,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_70|CS202002013_71|CS202002013_72|CS202002013_73|CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80|CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85|CS202002013_86|CS202002013_87|CS202002013_88,No +Non-Neuronal,Non-Neuronal,RNAseq 091-102,CS202002013_235,Non-neuronal,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_91|CS202002013_92|CS202002013_93|CS202002013_94|CS202002013_95|CS202002013_96|CS202002013_97|CS202002013_98|CS202002013_99|CS202002013_100|CS202002013_101|CS202002013_102,Class +Oligo-OPC,Oligo-OPC,"RNAseq 091,095-102",CS202002013_236,Oligodendrocyte-OPC,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_91|CS202002013_95|CS202002013_96|CS202002013_97|CS202002013_98|CS202002013_99|CS202002013_100|CS202002013_101|CS202002013_102,No +PVM,PVM,RNAseq 114-116,CS202002013_237,PVM,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_114|CS202002013_115|CS202002013_116,No +Lamp5_C2,Lamp5_C2,RNAseq 006-007,CS202002013_238,,Lamp5_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_6|CS202002013_7,No +Sncg_C3,Sncg_C3,RNAseq 011-013,CS202002013_239,,Sncg_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_11|CS202002013_12|CS202002013_13,No +Sncg_C1,Sncg_C1,"RNAseq 014, 016",CS202002013_240,,Sncg_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_14|CS202002013_16,No +Vip_C3,Vip_C3,"RNAseq 015, 019, 022",CS202002013_241,,Vip_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_15|CS202002013_19|CS202002013_22,No +Vip_C2,Vip_C2,"RNAseq 017-018, 020-021",CS202002013_242,,Vip_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_17|CS202002013_18|CS202002013_20|CS202002013_21,No +Vip_C1,Vip_C1,RNAseq 023-025,CS202002013_243,,Vip_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_23|CS202002013_24|CS202002013_25,No +Sst_C2,Sst_C2,"RNAseq 029-030, 034",CS202002013_244,,Sst_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_29|CS202002013_30|CS202002013_34,No +Sst_C3,Sst_C3,"RNAseq 035-036, 038-041",CS202002013_245,,Sst_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_35|CS202002013_36|CS202002013_38|CS202002013_39|CS202002013_40|CS202002013_41,No +Sst_C6,Sst_C6,RNAseq 043-045,CS202002013_246,,Sst_6,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_43|CS202002013_44|CS202002013_45,No +Pvalb_C1,Pvalb_C1,"RNAseq 046, 050-055",CS202002013_247,,Pvalb_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_46|CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53|CS202002013_54|CS202002013_55,No +Pvalb_C2,Pvalb_C2,RNAseq 048-049,CS202002013_248,,Pvalb_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_48|CS202002013_49,No +L5 IT_C1,L5 IT_C1,"RNAseq 061-062, 065",CS202002013_249,,L5 IT_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_61|CS202002013_62|CS202002013_65,No +L6 IT_C2,L6 IT_C2,"RNAseq 066, 068",CS202002013_250,,L6 IT_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_66|CS202002013_68,No +L5 ET_C1,L5 ET_C1,"RNAseq 070, 072-073",CS202002013_251,,L5 ET_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_70|CS202002013_72|CS202002013_73,No +L6 CT_C1,L6 CT_C1,"RNAseq 075, 077-081",CS202002013_252,,L6 CT_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_75|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80|CS202002013_81,No +Oligo_C2,Oligo_C2,"RNAseq 098, 110-112",CS202002013_253,,Oligo_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_98|CS202002013_110|CS202002013_111|CS202002013_112,No +VLMC(i),VLMC(i),"RNAseq 104-107, 110",CS202002013_254,,VLMC(i),Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_110,No +Large CCK basket cell,Large CCK basket cell,RNAseq 009-012,CS202002013_255,,Large CCK basket cell,Federico Scala,10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_9|CS202002013_10|CS202002013_11|CS202002013_12,No +L5 T Martinotti cell,L5 T Martinotti cell,RNAseq 030-032,CS202002013_256,,L5 T Martinotti cell,Federico Scala,10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_30|CS202002013_31|CS202002013_32,No +Lower FS Basket cell,Lower FS Basket cell,RNAseq 049-053,CS202002013_257,,Lower FS Basket cell,Federico Scala,10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_49|CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53,No \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202002270.csv b/src/dendrograms/nomenclature_table_CCN202002270.csv index f9bffb7e..ad7d6888 100644 --- a/src/dendrograms/nomenclature_table_CCN202002270.csv +++ b/src/dendrograms/nomenclature_table_CCN202002270.csv @@ -1,59 +1,59 @@ -cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions -Lamp5_1,Lamp5_1,Integrated 01,CS202002270_1,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Lamp5_5,Lamp5_5,Integrated 02,CS202002270_2,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Lamp5_2,Lamp5_2,Integrated 03,CS202002270_3,,Lamp5 Rosehip,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Lamp5_3,Lamp5_3,Integrated 04,CS202002270_4,Lamp5 Lhx6,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Sncg_1,Sncg_1,Integrated 05,CS202002270_5,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Sncg_2,Sncg_2,Integrated 06,CS202002270_6,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Lamp5_4,Lamp5_4,Integrated 07,CS202002270_7,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Sncg_3,Sncg_3,Integrated 08,CS202002270_8,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Sncg_4,Sncg_4,Integrated 09,CS202002270_9,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Vip_1,Vip_1,Integrated 10,CS202002270_10,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Vip_2,Vip_2,Integrated 11,CS202002270_11,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Vip_3,Vip_3,Integrated 12,CS202002270_12,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Vip_4,Vip_4,Integrated 13,CS202002270_13,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Sst Chodl,Sst Chodl,Integrated 14,CS202002270_14,,Long-range projecting Sst,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Sst_1,Sst_1,Integrated 15,CS202002270_15,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Sst_2,Sst_2,Integrated 16,CS202002270_16,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Sst_4,Sst_4,Integrated 17,CS202002270_17,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Sst_3,Sst_3,Integrated 18,CS202002270_18,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Sst_5,Sst_5,Integrated 19,CS202002270_19,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Sst_6,Sst_6,Integrated 20,CS202002270_20,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Sst_7,Sst_7,Integrated 21,CS202002270_21,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Pvalb_1,Pvalb_1,Integrated 22,CS202002270_22,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Pvalb_2,Pvalb_2,Integrated 23,CS202002270_23,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Chandelier,Chandelier,Integrated 24,CS202002270_24,Chandelier,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -L2/3 IT,L2/3 IT,Integrated 25,CS202002270_25,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -L6 IT_1,L6 IT_1,Integrated 26,CS202002270_26,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -L6 IT_2,L6 IT_2,Integrated 27,CS202002270_27,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -L5 IT_1,L5 IT_1,Integrated 28,CS202002270_28,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -L5 IT_2,L5 IT_2,Integrated 29,CS202002270_29,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -L5 IT_3,L5 IT_3,Integrated 30,CS202002270_30,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -L6 IT_3,L6 IT_3,Integrated 31,CS202002270_31,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -L5 ET_1,L5 ET_1,Integrated 32,CS202002270_32,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -L5 ET_2,L5 ET_2,Integrated 33,CS202002270_33,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -L6 CT_1,L6 CT_1,Integrated 34,CS202002270_34,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -L6 CT_2,L6 CT_2,Integrated 35,CS202002270_35,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -L6b,L6b,Integrated 36,CS202002270_36,L6b,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -L5/6 NP,L5/6 NP,Integrated 37,CS202002270_37,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -OPC,OPC,Integrated 38,CS202002270_38,OPC,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Astro_1,Astro_1,Integrated 39,CS202002270_39,,ILA / fibrous astrocyte,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Astro_2,Astro_2,Integrated 40,CS202002270_40,,Protoplasmic astrocyte,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Oligo_1,Oligo_1,Integrated 41,CS202002270_41,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Oligo_2,Oligo_2,Integrated 42,CS202002270_42,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Endo,Endo,Integrated 43,CS202002270_43,Endothelial,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -VLMC,VLMC,Integrated 44,CS202002270_44,VLMC,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -Microglia/PVM,Microglia/PVM,Integrated 45,CS202002270_45,Microglia-PVM,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq, -L5 ET,L5 ET,Integrated 32-33,CS202002270_53,L5 ET,Betz|L5 PT,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_32|CS202002270_33 -Astro,Astro,Integrated 39-40,CS202002270_55,Astrocyte,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_39|CS202002270_40 -Oligo,Oligo,Integrated 41-42,CS202002270_56,Oligodendrocyte,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_41|CS202002270_42 -CGE/PoA,CGE/PoA,Integrated 01-13,CS202002270_57,CGE/PoA,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_1|CS202002270_2|CS202002270_3|CS202002270_4|CS202002270_5|CS202002270_6|CS202002270_7|CS202002270_8|CS202002270_9|CS202002270_10|CS202002270_11|CS202002270_12|CS202002270_13 -MGE,MGE,Integrated 14-24,CS202002270_58,MGE,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_14|CS202002270_15|CS202002270_16|CS202002270_17|CS202002270_18|CS202002270_19|CS202002270_20|CS202002270_21|CS202002270_22|CS202002270_23|CS202002270_24 -IT projecting,IT projecting,Integrated 25-31,CS202002270_59,IT projecting,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_25|CS202002270_26|CS202002270_27|CS202002270_28|CS202002270_29|CS202002270_30|CS202002270_31 -Non-IT projecting,Non-IT projecting,Integrated 32-37,CS202002270_60,Non-IT projecting,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_32|CS202002270_33|CS202002270_34|CS202002270_35|CS202002270_36|CS202002270_37 -Oligo-OPC,Oligo-OPC,"Integrated 38, 41-42",CS202002270_61,Oligodendrocyte-OPC,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_38|CS202002270_41|CS202002270_42 -Other NN,Other NN,Integrated 43-45,CS202002270_62,Non-neural,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_43|CS202002270_44|CS202002270_45 -GABAergic,GABAergic,Integrated 01-24,CS202002270_63,Neuronal: GABAergic,Inhibitory,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_1|CS202002270_2|CS202002270_3|CS202002270_4|CS202002270_5|CS202002270_6|CS202002270_7|CS202002270_8|CS202002270_9|CS202002270_10|CS202002270_11|CS202002270_12|CS202002270_13|CS202002270_14|CS202002270_15|CS202002270_16|CS202002270_17|CS202002270_18|CS202002270_19|CS202002270_20|CS202002270_21|CS202002270_22|CS202002270_23|CS202002270_24 -Glutamatergic,Glutamatergic,Integrated 25-37,CS202002270_64,Neuronal: Glutamatergic,Excitatory,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_25|CS202002270_26|CS202002270_27|CS202002270_28|CS202002270_29|CS202002270_30|CS202002270_31|CS202002270_32|CS202002270_33|CS202002270_34|CS202002270_35|CS202002270_36|CS202002270_37 -Non-Neuronal,Non-Neuronal,Integrated 38-42,CS202002270_65,Non-neuronal,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_38|CS202002270_39|CS202002270_40|CS202002270_41|CS202002270_42 -,All cells,Integrated 01-45,CS202002270_66,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_1|CS202002270_2|CS202002270_3|CS202002270_4|CS202002270_5|CS202002270_6|CS202002270_7|CS202002270_8|CS202002270_9|CS202002270_10|CS202002270_11|CS202002270_12|CS202002270_13|CS202002270_14|CS202002270_15|CS202002270_16|CS202002270_17|CS202002270_18|CS202002270_19|CS202002270_20|CS202002270_21|CS202002270_22|CS202002270_23|CS202002270_24|CS202002270_25|CS202002270_26|CS202002270_27|CS202002270_28|CS202002270_29|CS202002270_30|CS202002270_31|CS202002270_32|CS202002270_33|CS202002270_34|CS202002270_35|CS202002270_36|CS202002270_37|CS202002270_38|CS202002270_39|CS202002270_40|CS202002270_41|CS202002270_42|CS202002270_43|CS202002270_44|CS202002270_45 \ No newline at end of file +cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions,cell_type_card +Lamp5_1,Lamp5_1,Integrated 01,CS202002270_1,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +Lamp5_5,Lamp5_5,Integrated 02,CS202002270_2,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +Lamp5_2,Lamp5_2,Integrated 03,CS202002270_3,,Lamp5 Rosehip,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +Lamp5_3,Lamp5_3,Integrated 04,CS202002270_4,Lamp5 Lhx6,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +Sncg_1,Sncg_1,Integrated 05,CS202002270_5,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +Sncg_2,Sncg_2,Integrated 06,CS202002270_6,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +Lamp5_4,Lamp5_4,Integrated 07,CS202002270_7,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +Sncg_3,Sncg_3,Integrated 08,CS202002270_8,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +Sncg_4,Sncg_4,Integrated 09,CS202002270_9,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +Vip_1,Vip_1,Integrated 10,CS202002270_10,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +Vip_2,Vip_2,Integrated 11,CS202002270_11,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +Vip_3,Vip_3,Integrated 12,CS202002270_12,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +Vip_4,Vip_4,Integrated 13,CS202002270_13,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +Sst Chodl,Sst Chodl,Integrated 14,CS202002270_14,,Long-range projecting Sst,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +Sst_1,Sst_1,Integrated 15,CS202002270_15,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +Sst_2,Sst_2,Integrated 16,CS202002270_16,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +Sst_4,Sst_4,Integrated 17,CS202002270_17,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +Sst_3,Sst_3,Integrated 18,CS202002270_18,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +Sst_5,Sst_5,Integrated 19,CS202002270_19,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +Sst_6,Sst_6,Integrated 20,CS202002270_20,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +Sst_7,Sst_7,Integrated 21,CS202002270_21,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +Pvalb_1,Pvalb_1,Integrated 22,CS202002270_22,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +Pvalb_2,Pvalb_2,Integrated 23,CS202002270_23,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +Chandelier,Chandelier,Integrated 24,CS202002270_24,Chandelier,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +L2/3 IT,L2/3 IT,Integrated 25,CS202002270_25,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +L6 IT_1,L6 IT_1,Integrated 26,CS202002270_26,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +L6 IT_2,L6 IT_2,Integrated 27,CS202002270_27,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +L5 IT_1,L5 IT_1,Integrated 28,CS202002270_28,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +L5 IT_2,L5 IT_2,Integrated 29,CS202002270_29,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +L5 IT_3,L5 IT_3,Integrated 30,CS202002270_30,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +L6 IT_3,L6 IT_3,Integrated 31,CS202002270_31,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +L5 ET_1,L5 ET_1,Integrated 32,CS202002270_32,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +L5 ET_2,L5 ET_2,Integrated 33,CS202002270_33,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +L6 CT_1,L6 CT_1,Integrated 34,CS202002270_34,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +L6 CT_2,L6 CT_2,Integrated 35,CS202002270_35,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +L6b,L6b,Integrated 36,CS202002270_36,L6b,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +L5/6 NP,L5/6 NP,Integrated 37,CS202002270_37,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +OPC,OPC,Integrated 38,CS202002270_38,OPC,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +Astro_1,Astro_1,Integrated 39,CS202002270_39,,ILA / fibrous astrocyte,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +Astro_2,Astro_2,Integrated 40,CS202002270_40,,Protoplasmic astrocyte,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +Oligo_1,Oligo_1,Integrated 41,CS202002270_41,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +Oligo_2,Oligo_2,Integrated 42,CS202002270_42,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +Endo,Endo,Integrated 43,CS202002270_43,Endothelial,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +VLMC,VLMC,Integrated 44,CS202002270_44,VLMC,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +Microglia/PVM,Microglia/PVM,Integrated 45,CS202002270_45,Microglia-PVM,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,,No +L5 ET,L5 ET,Integrated 32-33,CS202002270_53,L5 ET,Betz|L5 PT,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_32|CS202002270_33,No +Astro,Astro,Integrated 39-40,CS202002270_55,Astrocyte,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_39|CS202002270_40,No +Oligo,Oligo,Integrated 41-42,CS202002270_56,Oligodendrocyte,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_41|CS202002270_42,No +CGE/PoA,CGE/PoA,Integrated 01-13,CS202002270_57,CGE/PoA,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_1|CS202002270_2|CS202002270_3|CS202002270_4|CS202002270_5|CS202002270_6|CS202002270_7|CS202002270_8|CS202002270_9|CS202002270_10|CS202002270_11|CS202002270_12|CS202002270_13,No +MGE,MGE,Integrated 14-24,CS202002270_58,MGE,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_14|CS202002270_15|CS202002270_16|CS202002270_17|CS202002270_18|CS202002270_19|CS202002270_20|CS202002270_21|CS202002270_22|CS202002270_23|CS202002270_24,No +IT projecting,IT projecting,Integrated 25-31,CS202002270_59,IT projecting,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_25|CS202002270_26|CS202002270_27|CS202002270_28|CS202002270_29|CS202002270_30|CS202002270_31,No +Non-IT projecting,Non-IT projecting,Integrated 32-37,CS202002270_60,Non-IT projecting,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_32|CS202002270_33|CS202002270_34|CS202002270_35|CS202002270_36|CS202002270_37,No +Oligo-OPC,Oligo-OPC,"Integrated 38, 41-42",CS202002270_61,Oligodendrocyte-OPC,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_38|CS202002270_41|CS202002270_42,No +Other NN,Other NN,Integrated 43-45,CS202002270_62,Non-neural,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_43|CS202002270_44|CS202002270_45,No +GABAergic,GABAergic,Integrated 01-24,CS202002270_63,Neuronal: GABAergic,Inhibitory,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_1|CS202002270_2|CS202002270_3|CS202002270_4|CS202002270_5|CS202002270_6|CS202002270_7|CS202002270_8|CS202002270_9|CS202002270_10|CS202002270_11|CS202002270_12|CS202002270_13|CS202002270_14|CS202002270_15|CS202002270_16|CS202002270_17|CS202002270_18|CS202002270_19|CS202002270_20|CS202002270_21|CS202002270_22|CS202002270_23|CS202002270_24,No +Glutamatergic,Glutamatergic,Integrated 25-37,CS202002270_64,Neuronal: Glutamatergic,Excitatory,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_25|CS202002270_26|CS202002270_27|CS202002270_28|CS202002270_29|CS202002270_30|CS202002270_31|CS202002270_32|CS202002270_33|CS202002270_34|CS202002270_35|CS202002270_36|CS202002270_37,No +Non-Neuronal,Non-Neuronal,Integrated 38-42,CS202002270_65,Non-neuronal,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_38|CS202002270_39|CS202002270_40|CS202002270_41|CS202002270_42,No +All cells,All cells,Integrated 01-45,CS202002270_66,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002270,Human|Marmoset|Mouse,RNAseq,CS202002270_1|CS202002270_2|CS202002270_3|CS202002270_4|CS202002270_5|CS202002270_6|CS202002270_7|CS202002270_8|CS202002270_9|CS202002270_10|CS202002270_11|CS202002270_12|CS202002270_13|CS202002270_14|CS202002270_15|CS202002270_16|CS202002270_17|CS202002270_18|CS202002270_19|CS202002270_20|CS202002270_21|CS202002270_22|CS202002270_23|CS202002270_24|CS202002270_25|CS202002270_26|CS202002270_27|CS202002270_28|CS202002270_29|CS202002270_30|CS202002270_31|CS202002270_32|CS202002270_33|CS202002270_34|CS202002270_35|CS202002270_36|CS202002270_37|CS202002270_38|CS202002270_39|CS202002270_40|CS202002270_41|CS202002270_42|CS202002270_43|CS202002270_44|CS202002270_45,No \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202002271.csv b/src/dendrograms/nomenclature_table_CCN202002271.csv index 3820f42c..e30b650c 100644 --- a/src/dendrograms/nomenclature_table_CCN202002271.csv +++ b/src/dendrograms/nomenclature_table_CCN202002271.csv @@ -1,21 +1,21 @@ -cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions -Exc L5 FEZF2 LOC106993015,Exc L5 FEZF2 LOC106993015,RNAseq 001,CS202002271_1,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, -Exc L5 FEZF2 LOC114676463,Exc L5 FEZF2 LOC114676463,RNAseq 002,CS202002271_2,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, -Exc L5 RORB LOC106992498,Exc L5 RORB LOC106992498,RNAseq 003,CS202002271_3,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, -Exc L5 RORB COL13A1,Exc L5 RORB COL13A1,RNAseq 004,CS202002271_4,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, -Exc L5 RORB LOC106992627,Exc L5 RORB LOC106992627,RNAseq 005,CS202002271_5,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, -Exc L5 THEMIS THEMIS,Exc L5 THEMIS THEMIS,RNAseq 006,CS202002271_6,L6 IT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, -Exc L5 SLC17A7 NTNG2,Exc L5 SLC17A7 NTNG2,RNAseq 007,CS202002271_7,L6 IT Car3,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, -Exc L5 SLC17A7 CCDC60,Exc L5 SLC17A7 CCDC60,RNAseq 008,CS202002271_8,L6 CT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, -Exc L5 SLC17A7 LOC114676287,Exc L5 SLC17A7 LOC114676287,RNAseq 009,CS202002271_9,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, -Exc L5 SLC17A7 OTOGL,Exc L5 SLC17A7 OTOGL,RNAseq 010,CS202002271_10,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, -Exc L5 SLC17A7 LOC114680213,Exc L5 SLC17A7 LOC114680213,RNAseq 011,CS202002271_11,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, -Exc L5 SLC17A7 CORIN,Exc L5 SLC17A7 CORIN,RNAseq 012,CS202002271_12,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, -Exc L5 SLC17A7 TLL1,Exc L5 SLC17A7 TLL1,RNAseq 013,CS202002271_13,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq, -L5 ET,L5 ET,RNAseq 001-002,CS202002271_14,L5 ET,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq,CS202002271_1|CS202002271_2 -L5 IT,L5 IT,RNAseq 003-005,CS202002271_15,L5 IT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq,CS202002271_3|CS202002271_4|CS202002271_5 -L6b,L6b,RNAseq 009-010,CS202002271_16,L6b,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq,CS202002271_9|CS202002271_10 -L5/6 NP,L5/6 NP,RNAseq 011-013,CS202002271_17,L5/6 NP,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq,CS202002271_11|CS202002271_12|CS202002271_13 -Non-IT projecting,Non-IT projecting,"RNAseq 001-002, 008-013",CS202002271_18,Non-IT projecting,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq,CS202002271_1|CS202002271_2|CS202002271_8|CS202002271_9|CS202002271_10|CS202002271_11|CS202002271_12|CS202002271_13 -IT projecting,IT projecting,RNAseq 003-007,CS202002271_19,IT projecting,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq,CS202002271_3|CS202002271_4|CS202002271_5|CS202002271_6|CS202002271_7 -Glutamatergic,Glutamatergic,RNAseq 001-013,CS202002271_20,Neuronal: Glutamatergic,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq,CS202002271_1|CS202002271_2|CS202002271_3|CS202002271_4|CS202002271_5|CS202002271_6|CS202002271_7|CS202002271_8|CS202002271_9|CS202002271_10|CS202002271_11|CS202002271_12|CS202002271_13 \ No newline at end of file +cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions,cell_type_card +Exc L5 FEZF2 LOC106993015,Exc L5 FEZF2 LOC106993015,RNAseq 001,CS202002271_1,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq,,No +Exc L5 FEZF2 LOC114676463,Exc L5 FEZF2 LOC114676463,RNAseq 002,CS202002271_2,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq,,No +Exc L5 RORB LOC106992498,Exc L5 RORB LOC106992498,RNAseq 003,CS202002271_3,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq,,No +Exc L5 RORB COL13A1,Exc L5 RORB COL13A1,RNAseq 004,CS202002271_4,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq,,No +Exc L5 RORB LOC106992627,Exc L5 RORB LOC106992627,RNAseq 005,CS202002271_5,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq,,No +Exc L5 THEMIS THEMIS,Exc L5 THEMIS THEMIS,RNAseq 006,CS202002271_6,L6 IT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq,,No +Exc L5 SLC17A7 NTNG2,Exc L5 SLC17A7 NTNG2,RNAseq 007,CS202002271_7,L6 IT Car3,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq,,No +Exc L5 SLC17A7 CCDC60,Exc L5 SLC17A7 CCDC60,RNAseq 008,CS202002271_8,L6 CT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq,,No +Exc L5 SLC17A7 LOC114676287,Exc L5 SLC17A7 LOC114676287,RNAseq 009,CS202002271_9,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq,,No +Exc L5 SLC17A7 OTOGL,Exc L5 SLC17A7 OTOGL,RNAseq 010,CS202002271_10,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq,,No +Exc L5 SLC17A7 LOC114680213,Exc L5 SLC17A7 LOC114680213,RNAseq 011,CS202002271_11,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq,,No +Exc L5 SLC17A7 CORIN,Exc L5 SLC17A7 CORIN,RNAseq 012,CS202002271_12,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq,,No +Exc L5 SLC17A7 TLL1,Exc L5 SLC17A7 TLL1,RNAseq 013,CS202002271_13,,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq,,No +L5 ET,L5 ET,RNAseq 001-002,CS202002271_14,L5 ET,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq,CS202002271_1|CS202002271_2,No +L5 IT,L5 IT,RNAseq 003-005,CS202002271_15,L5 IT,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq,CS202002271_3|CS202002271_4|CS202002271_5,No +L6b,L6b,RNAseq 009-010,CS202002271_16,L6b,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq,CS202002271_9|CS202002271_10,No +L5/6 NP,L5/6 NP,RNAseq 011-013,CS202002271_17,L5/6 NP,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq,CS202002271_11|CS202002271_12|CS202002271_13,No +Non-IT projecting,Non-IT projecting,"RNAseq 001-002, 008-013",CS202002271_18,Non-IT projecting,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq,CS202002271_1|CS202002271_2|CS202002271_8|CS202002271_9|CS202002271_10|CS202002271_11|CS202002271_12|CS202002271_13,No +IT projecting,IT projecting,RNAseq 003-007,CS202002271_19,IT projecting,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq,CS202002271_3|CS202002271_4|CS202002271_5|CS202002271_6|CS202002271_7,No +Glutamatergic,Glutamatergic,RNAseq 001-013,CS202002271_20,Neuronal: Glutamatergic,,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002271,Macaque,RNAseq,CS202002271_1|CS202002271_2|CS202002271_3|CS202002271_4|CS202002271_5|CS202002271_6|CS202002271_7|CS202002271_8|CS202002271_9|CS202002271_10|CS202002271_11|CS202002271_12|CS202002271_13,No \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202002272.csv b/src/dendrograms/nomenclature_table_CCN202002272.csv index 2a2d6e67..6d3442ab 100644 --- a/src/dendrograms/nomenclature_table_CCN202002272.csv +++ b/src/dendrograms/nomenclature_table_CCN202002272.csv @@ -1,47 +1,47 @@ -cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions -Inh L1 LAMP5 LOC101927870,Inh L1 LAMP5 LOC101927870,DNAm 01,CS202002272_1,,"RNAseq 001, 114-115 in CCN201912131",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Inh L1-6 LAMP5 CPLX3,Inh L1-6 LAMP5 CPLX3,DNAm 02,CS202002272_2,,RNAseq 002-004 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Inh L1-6 LAMP5 SFRP1,Inh L1-6 LAMP5 SFRP1,DNAm 03,CS202002272_3,,RNAseq 005-006 in CCN201912131|Lamp5_3,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Inh L1 GAD1 SP8,Inh L1 GAD1 SP8,DNAm 04,CS202002272_4,,RNAseq 007-013 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Inh L1 GAD1 NDST4,Inh L1 GAD1 NDST4,DNAm 05,CS202002272_5,,RNAseq 016-018 in CCN201912131|Sncg_4,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Inh L1-3 VIP CCDC184,Inh L1-3 VIP CCDC184,DNAm 06,CS202002272_6,,RNAseq 019-021 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Inh L1-3 VIP NPR3,Inh L1-3 VIP NPR3,DNAm 07,CS202002272_7,,RNAseq 022-026 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Inh L1-5 VIP NOX4,Inh L1-5 VIP NOX4,DNAm 08,CS202002272_8,,RNAseq 027-028 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Inh L1-6 VIP ABI3BP,Inh L1-6 VIP ABI3BP,DNAm 09,CS202002272_9,,RNAseq 029-033 in CCN201912131|Vip_3,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Inh L2-6 VIP PENK,Inh L2-6 VIP PENK,DNAm 10,CS202002272_10,,RNAseq 034-035 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Inh L3-5 VIP LOC101929231,Inh L3-5 VIP LOC101929231,DNAm 11,CS202002272_11,,RNAseq 036-039 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Inh L1-5 SST AHR,Inh L1-5 SST AHR,DNAm 12,CS202002272_12,,"RNAseq 040, 046-047, 050-052, 068 in CCN201912131",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Inh L5-6 SST DCN,Inh L5-6 SST DCN,DNAm 13,CS202002272_13,,RNAseq 041-045 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Inh L5-6 SST KIAA1644,Inh L5-6 SST KIAA1644,DNAm 14,CS202002272_14,,"RNAseq 048-049, 053-058 in CCN201912131",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Inh L2-6 PVALB SIAH3,Inh L2-6 PVALB SIAH3,DNAm 15,CS202002272_15,,"RNAseq 059-061, 063-067 in CCN201912131",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Inh L5-6 PVALB WNT16,Inh L5-6 PVALB WNT16,DNAm 16,CS202002272_16,,"RNAseq 062, 069-071 in CCN201912131",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Inh L1-6 PVALB COL15A1,Inh L1-6 PVALB COL15A1,DNAm 17,CS202002272_17,Chandelier,RNAseq 072 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Exc L1-3 LAMP5 LINC00507,Exc L1-3 LAMP5 LINC00507,DNAm 18,CS202002272_18,L2/3 IT,RNAseq 073-081 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Exc L2-3 RORB LOC101927281,Exc L2-3 RORB LOC101927281,DNAm 19,CS202002272_19,,RNAseq 079-080 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Exc L3-5 RORB COL22A1,Exc L3-5 RORB COL22A1,DNAm 20,CS202002272_20,,"RNAseq 082-086, 091 in CCN201912131",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Exc L5-6 THEMIS SERPINF1,Exc L5-6 THEMIS SERPINF1,DNAm 21,CS202002272_21,L6 IT,"RNAseq 084, 088, 092-095 in CCN201912131",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Exc L3-5 RORB LOC105374972,Exc L3-5 RORB LOC105374972,DNAm 22,CS202002272_22,,"RNAseq 087, 089-090 in CCN201912131",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Exc L5-6 THEMIS SMYD1,Exc L5-6 THEMIS SMYD1,DNAm 23,CS202002272_23,L6 IT Car3,RNAseq 096 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Exc L5-6 FEZF2 LOC105371833,Exc L5-6 FEZF2 LOC105371833,DNAm 24,CS202002272_24,L6 CT,RNAseq 097-102 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Exc L6 FEZF2 NPFFR2,Exc L6 FEZF2 NPFFR2,DNAm 25,CS202002272_25,L6b,RNAseq 103-108 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Exc L3-5 FEZF2 LOC101929352,Exc L3-5 FEZF2 LOC101929352,DNAm 26,CS202002272_26,L5 ET,RNAseq 109-111 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Exc L5-6 FEZF2 NPSR1-AS1,Exc L5-6 FEZF2 NPSR1-AS1,DNAm 27,CS202002272_27,L5/6 NP,RNAseq 112-116 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Oligo-OPC L1-6 OPALIN PLP1,Oligo-OPC L1-6 OPALIN PLP1,DNAm 28,CS202002272_28,Oligodendrocyte-OPC,RNAseq 117-121 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Astro L1-6 FGFR3 RNF219-AS1,Astro L1-6 FGFR3 RNF219-AS1,DNAm 29,CS202002272_29,Astrocyte,RNAseq 122-124 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Glia L1-5 NOSTRIN MECOM,Glia L1-5 NOSTRIN MECOM,DNAm 30,CS202002272_30,,RNAseq 125-126 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Micro L1-6 TYROBP CD74,Micro L1-6 TYROBP CD74,DNAm 31,CS202002272_31,Microglia-PVM,RNAseq 127 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm, -Lamp5,Lamp5,DNAm 01-03,CS202002272_32,Lamp5,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_1|CS202002272_2|CS202002272_3 -Sncg,Sncg,DNAm 04-05,CS202002272_33,Sncg,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_4|CS202002272_5 -Vip,Vip,DNAm 06-11,CS202002272_34,Vip,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_6|CS202002272_7|CS202002272_8|CS202002272_9|CS202002272_10|CS202002272_11 -Sst,Sst,DNAm 12-14,CS202002272_35,Sst,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_12|CS202002272_13|CS202002272_14 -Pvalb,Pvalb,DNAm 15-17,CS202002272_36,Pvalb,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_15|CS202002272_16|CS202002272_17 -L5 IT,L5 IT,"DNAm 20, 22",CS202002272_37,L5 IT,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_20|CS202002272_22 -Non-neuronal,Non-neuronal,DNAm 28-29,CS202002272_38,Non-neuronal,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_28|CS202002272_29 -Neuronal: GABAergic,Neuronal: GABAergic,DNAm 01-17,CS202002272_39,Neuronal: GABAergic,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_1|CS202002272_2|CS202002272_3|CS202002272_4|CS202002272_5|CS202002272_6|CS202002272_7|CS202002272_8|CS202002272_9|CS202002272_10|CS202002272_11|CS202002272_12|CS202002272_13|CS202002272_14|CS202002272_15|CS202002272_16|CS202002272_17 -Neuronal: Glutamatergic,Neuronal: Glutamatergic,DNAm 18-27,CS202002272_40,Neuronal: Glutamatergic,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_18|CS202002272_19|CS202002272_20|CS202002272_21|CS202002272_22|CS202002272_23|CS202002272_24|CS202002272_25|CS202002272_26|CS202002272_27 -Non-neural,Non-neural,DNAm 30-31,CS202002272_41,Non-neural,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_30|CS202002272_31 -CGE/PoA,CGE/PoA,DNAm 01-11,CS202002272_42,CGE/PoA,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_1|CS202002272_2|CS202002272_3|CS202002272_4|CS202002272_5|CS202002272_6|CS202002272_7|CS202002272_8|CS202002272_9|CS202002272_10|CS202002272_11 -MGE,MGE,DNAm 12-17,CS202002272_43,MGE,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_12|CS202002272_13|CS202002272_14|CS202002272_15|CS202002272_16|CS202002272_17 -IT projecting,IT projecting,DNAm 18-23,CS202002272_44,IT projecting,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_18|CS202002272_19|CS202002272_20|CS202002272_21|CS202002272_22|CS202002272_23 -Non-IT projecting,Non-IT projecting,DNAm 24-27,CS202002272_45,Non-IT projecting,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_24|CS202002272_25|CS202002272_26|CS202002272_27 -,All cells,DNAm 01-31,CS202002272_46,,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_1|CS202002272_2|CS202002272_3|CS202002272_4|CS202002272_5|CS202002272_6|CS202002272_7|CS202002272_8|CS202002272_9|CS202002272_10|CS202002272_11|CS202002272_12|CS202002272_13|CS202002272_14|CS202002272_15|CS202002272_16|CS202002272_17|CS202002272_18|CS202002272_19|CS202002272_20|CS202002272_21|CS202002272_22|CS202002272_23|CS202002272_24|CS202002272_25|CS202002272_26|CS202002272_27|CS202002272_28|CS202002272_29|CS202002272_30|CS202002272_31 \ No newline at end of file +cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions,cell_type_card +Inh L1 LAMP5 LOC101927870,Inh L1 LAMP5 LOC101927870,DNAm 01,CS202002272_1,,"RNAseq 001, 114-115 in CCN201912131",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,,No +Inh L1-6 LAMP5 CPLX3,Inh L1-6 LAMP5 CPLX3,DNAm 02,CS202002272_2,,RNAseq 002-004 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,,No +Inh L1-6 LAMP5 SFRP1,Inh L1-6 LAMP5 SFRP1,DNAm 03,CS202002272_3,,RNAseq 005-006 in CCN201912131|Lamp5_3,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,,No +Inh L1 GAD1 SP8,Inh L1 GAD1 SP8,DNAm 04,CS202002272_4,,RNAseq 007-013 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,,No +Inh L1 GAD1 NDST4,Inh L1 GAD1 NDST4,DNAm 05,CS202002272_5,,RNAseq 016-018 in CCN201912131|Sncg_4,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,,No +Inh L1-3 VIP CCDC184,Inh L1-3 VIP CCDC184,DNAm 06,CS202002272_6,,RNAseq 019-021 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,,No +Inh L1-3 VIP NPR3,Inh L1-3 VIP NPR3,DNAm 07,CS202002272_7,,RNAseq 022-026 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,,No +Inh L1-5 VIP NOX4,Inh L1-5 VIP NOX4,DNAm 08,CS202002272_8,,RNAseq 027-028 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,,No +Inh L1-6 VIP ABI3BP,Inh L1-6 VIP ABI3BP,DNAm 09,CS202002272_9,,RNAseq 029-033 in CCN201912131|Vip_3,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,,No +Inh L2-6 VIP PENK,Inh L2-6 VIP PENK,DNAm 10,CS202002272_10,,RNAseq 034-035 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,,No +Inh L3-5 VIP LOC101929231,Inh L3-5 VIP LOC101929231,DNAm 11,CS202002272_11,,RNAseq 036-039 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,,No +Inh L1-5 SST AHR,Inh L1-5 SST AHR,DNAm 12,CS202002272_12,,"RNAseq 040, 046-047, 050-052, 068 in CCN201912131",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,,No +Inh L5-6 SST DCN,Inh L5-6 SST DCN,DNAm 13,CS202002272_13,,RNAseq 041-045 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,,No +Inh L5-6 SST KIAA1644,Inh L5-6 SST KIAA1644,DNAm 14,CS202002272_14,,"RNAseq 048-049, 053-058 in CCN201912131",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,,No +Inh L2-6 PVALB SIAH3,Inh L2-6 PVALB SIAH3,DNAm 15,CS202002272_15,,"RNAseq 059-061, 063-067 in CCN201912131",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,,No +Inh L5-6 PVALB WNT16,Inh L5-6 PVALB WNT16,DNAm 16,CS202002272_16,,"RNAseq 062, 069-071 in CCN201912131",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,,No +Inh L1-6 PVALB COL15A1,Inh L1-6 PVALB COL15A1,DNAm 17,CS202002272_17,Chandelier,RNAseq 072 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,,No +Exc L1-3 LAMP5 LINC00507,Exc L1-3 LAMP5 LINC00507,DNAm 18,CS202002272_18,L2/3 IT,RNAseq 073-081 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,,No +Exc L2-3 RORB LOC101927281,Exc L2-3 RORB LOC101927281,DNAm 19,CS202002272_19,,RNAseq 079-080 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,,No +Exc L3-5 RORB COL22A1,Exc L3-5 RORB COL22A1,DNAm 20,CS202002272_20,,"RNAseq 082-086, 091 in CCN201912131",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,,No +Exc L5-6 THEMIS SERPINF1,Exc L5-6 THEMIS SERPINF1,DNAm 21,CS202002272_21,L6 IT,"RNAseq 084, 088, 092-095 in CCN201912131",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,,No +Exc L3-5 RORB LOC105374972,Exc L3-5 RORB LOC105374972,DNAm 22,CS202002272_22,,"RNAseq 087, 089-090 in CCN201912131",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,,No +Exc L5-6 THEMIS SMYD1,Exc L5-6 THEMIS SMYD1,DNAm 23,CS202002272_23,L6 IT Car3,RNAseq 096 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,,No +Exc L5-6 FEZF2 LOC105371833,Exc L5-6 FEZF2 LOC105371833,DNAm 24,CS202002272_24,L6 CT,RNAseq 097-102 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,,No +Exc L6 FEZF2 NPFFR2,Exc L6 FEZF2 NPFFR2,DNAm 25,CS202002272_25,L6b,RNAseq 103-108 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,,No +Exc L3-5 FEZF2 LOC101929352,Exc L3-5 FEZF2 LOC101929352,DNAm 26,CS202002272_26,L5 ET,RNAseq 109-111 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,,No +Exc L5-6 FEZF2 NPSR1-AS1,Exc L5-6 FEZF2 NPSR1-AS1,DNAm 27,CS202002272_27,L5/6 NP,RNAseq 112-116 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,,No +Oligo-OPC L1-6 OPALIN PLP1,Oligo-OPC L1-6 OPALIN PLP1,DNAm 28,CS202002272_28,Oligodendrocyte-OPC,RNAseq 117-121 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,,No +Astro L1-6 FGFR3 RNF219-AS1,Astro L1-6 FGFR3 RNF219-AS1,DNAm 29,CS202002272_29,Astrocyte,RNAseq 122-124 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,,No +Glia L1-5 NOSTRIN MECOM,Glia L1-5 NOSTRIN MECOM,DNAm 30,CS202002272_30,,RNAseq 125-126 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,,No +Micro L1-6 TYROBP CD74,Micro L1-6 TYROBP CD74,DNAm 31,CS202002272_31,Microglia-PVM,RNAseq 127 in CCN201912131,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,,No +Lamp5,Lamp5,DNAm 01-03,CS202002272_32,Lamp5,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_1|CS202002272_2|CS202002272_3,No +Sncg,Sncg,DNAm 04-05,CS202002272_33,Sncg,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_4|CS202002272_5,No +Vip,Vip,DNAm 06-11,CS202002272_34,Vip,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_6|CS202002272_7|CS202002272_8|CS202002272_9|CS202002272_10|CS202002272_11,No +Sst,Sst,DNAm 12-14,CS202002272_35,Sst,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_12|CS202002272_13|CS202002272_14,No +Pvalb,Pvalb,DNAm 15-17,CS202002272_36,Pvalb,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_15|CS202002272_16|CS202002272_17,No +L5 IT,L5 IT,"DNAm 20, 22",CS202002272_37,L5 IT,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_20|CS202002272_22,No +Non-neuronal,Non-neuronal,DNAm 28-29,CS202002272_38,Non-neuronal,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_28|CS202002272_29,No +Neuronal: GABAergic,Neuronal: GABAergic,DNAm 01-17,CS202002272_39,Neuronal: GABAergic,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_1|CS202002272_2|CS202002272_3|CS202002272_4|CS202002272_5|CS202002272_6|CS202002272_7|CS202002272_8|CS202002272_9|CS202002272_10|CS202002272_11|CS202002272_12|CS202002272_13|CS202002272_14|CS202002272_15|CS202002272_16|CS202002272_17,No +Neuronal: Glutamatergic,Neuronal: Glutamatergic,DNAm 18-27,CS202002272_40,Neuronal: Glutamatergic,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_18|CS202002272_19|CS202002272_20|CS202002272_21|CS202002272_22|CS202002272_23|CS202002272_24|CS202002272_25|CS202002272_26|CS202002272_27,No +Non-neural,Non-neural,DNAm 30-31,CS202002272_41,Non-neural,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_30|CS202002272_31,No +CGE/PoA,CGE/PoA,DNAm 01-11,CS202002272_42,CGE/PoA,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_1|CS202002272_2|CS202002272_3|CS202002272_4|CS202002272_5|CS202002272_6|CS202002272_7|CS202002272_8|CS202002272_9|CS202002272_10|CS202002272_11,No +MGE,MGE,DNAm 12-17,CS202002272_43,MGE,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_12|CS202002272_13|CS202002272_14|CS202002272_15|CS202002272_16|CS202002272_17,No +IT projecting,IT projecting,DNAm 18-23,CS202002272_44,IT projecting,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_18|CS202002272_19|CS202002272_20|CS202002272_21|CS202002272_22|CS202002272_23,No +Non-IT projecting,Non-IT projecting,DNAm 24-27,CS202002272_45,Non-IT projecting,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_24|CS202002272_25|CS202002272_26|CS202002272_27,No +All cells,All cells,DNAm 01-31,CS202002272_46,,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002272,Human,DNAm,CS202002272_1|CS202002272_2|CS202002272_3|CS202002272_4|CS202002272_5|CS202002272_6|CS202002272_7|CS202002272_8|CS202002272_9|CS202002272_10|CS202002272_11|CS202002272_12|CS202002272_13|CS202002272_14|CS202002272_15|CS202002272_16|CS202002272_17|CS202002272_18|CS202002272_19|CS202002272_20|CS202002272_21|CS202002272_22|CS202002272_23|CS202002272_24|CS202002272_25|CS202002272_26|CS202002272_27|CS202002272_28|CS202002272_29|CS202002272_30|CS202002272_31,No \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202002273.csv b/src/dendrograms/nomenclature_table_CCN202002273.csv index e0259c0b..0bf569eb 100644 --- a/src/dendrograms/nomenclature_table_CCN202002273.csv +++ b/src/dendrograms/nomenclature_table_CCN202002273.csv @@ -1,60 +1,60 @@ -cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions -Inh L1-6 LAMP5 KIRREL,Inh L1-6 LAMP5 KIRREL,ATACseq 01,CS202002273_1,,RNAseq 001-006 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Inh L1 GAD1 SP8,Inh L1 GAD1 SP8,ATACseq 02,CS202002273_2,,RNAseq 007-013 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Inh L1 LAMP5 NDNF,Inh L1 LAMP5 NDNF,ATACseq 03,CS202002273_3,,RNAseq 014-015 in CCN201912131|Lamp5_5,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Inh L1 GAD1 NDST4,Inh L1 GAD1 NDST4,ATACseq 04,CS202002273_4,,RNAseq 016-018 in CCN201912131|Sncg_4,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Inh L1-5 VIP KCNJ2,Inh L1-5 VIP KCNJ2,ATACseq 05,CS202002273_5,,"RNAseq 019-020, 039 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Inh L1-6 VIP IQGAP2,Inh L1-6 VIP IQGAP2,ATACseq 06,CS202002273_6,,"RNAseq 021, 027-038 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Inh L1-3 VIP NPR3,Inh L1-3 VIP NPR3,ATACseq 07,CS202002273_7,,RNAseq 022-026 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Inh L1-6 SST NPY,Inh L1-6 SST NPY,ATACseq 08,CS202002273_8,Sst Chodl,RNAseq 040 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Inh L3-5 SST EDNRA,Inh L3-5 SST EDNRA,ATACseq 09,CS202002273_9,,"RNAseq 041-042, 044-046, 049 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Inh L5-6 SST LOC101929667,Inh L5-6 SST LOC101929667,ATACseq 10,CS202002273_10,,"RNAseq 043, 048, 055-057 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Inh L1-3 SST LOC392232,Inh L1-3 SST LOC392232,ATACseq 11,CS202002273_11,,"RNAseq 047, 068 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Inh L1-3 SST LOC105379168,Inh L1-3 SST LOC105379168,ATACseq 12,CS202002273_12,,RNAseq 050-052 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Inh L5-6 SST EBPL,Inh L5-6 SST EBPL,ATACseq 13,CS202002273_13,,"RNAseq 053-054, 058 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Inh L5-6 PVALB GULP1,Inh L5-6 PVALB GULP1,ATACseq 14,CS202002273_14,,"RNAseq 059, 069-071 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Inh L5-6 PVALB LINC01057,Inh L5-6 PVALB LINC01057,ATACseq 15,CS202002273_15,,"RNAseq 060, 062 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Inh L3-5 PVALB ISG20,Inh L3-5 PVALB ISG20,ATACseq 16,CS202002273_16,,RNAseq 061 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Inh L2-5 PVALB LOC105376919,Inh L2-5 PVALB LOC105376919,ATACseq 17,CS202002273_17,,RNAseq 063-067 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Inh L1-6 PVALB COL15A1,Inh L1-6 PVALB COL15A1,ATACseq 18,CS202002273_18,Chandelier,RNAseq 072 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Exc L2 LAMP5 KCNG3,Exc L2 LAMP5 KCNG3,ATACseq 19,CS202002273_19,,RNAseq 073 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Exc L2 LINC00507 ATP7B,Exc L2 LINC00507 ATP7B,ATACseq 20,CS202002273_20,,RNAseq 074 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Exc L2 LINC00507 GLRA3,Exc L2 LINC00507 GLRA3,ATACseq 21,CS202002273_21,,RNAseq 075 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Exc L2-3 RORB RTKN2,Exc L2-3 RORB RTKN2,ATACseq 22,CS202002273_22,,RNAseq 076 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Exc L2-3 LINC00507 DSG3,Exc L2-3 LINC00507 DSG3,ATACseq 23,CS202002273_23,,RNAseq 077 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Exc L3 LAMP5 MIR3976HG,Exc L3 LAMP5 MIR3976HG,ATACseq 24,CS202002273_24,,"RNAseq 078, 081 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Exc L2-3 RORB VIPR2,Exc L2-3 RORB VIPR2,ATACseq 25,CS202002273_25,,"RNAseq 079-080, 083 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Exc L3-5 RORB COL22A1,Exc L3-5 RORB COL22A1,ATACseq 26,CS202002273_26,,"RNAseq 082, 085-086, 091 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Exc L5-6 THEMIS TMEM18,Exc L5-6 THEMIS TMEM18,ATACseq 27,CS202002273_27,,"RNAseq 084, 088, 092 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Exc L3-5 RORB LOC105374972,Exc L3-5 RORB LOC105374972,ATACseq 28,CS202002273_28,,"RNAseq 087, 089-090 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Exc L6 THEMIS LINC00343,Exc L6 THEMIS LINC00343,ATACseq 29,CS202002273_29,L6 IT,RNAseq 093-095 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Exc L5-6 THEMIS SMYD1,Exc L5-6 THEMIS SMYD1,ATACseq 30,CS202002273_30,L6 IT Car3,RNAseq 096 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Exc L5-6 FEZF2 LOC105376596,Exc L5-6 FEZF2 LOC105376596,ATACseq 31,CS202002273_31,L6 CT,"RNAseq 097-099, 101-102 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Exc L5-6 FEZF2 C9orf135-AS1,Exc L5-6 FEZF2 C9orf135-AS1,ATACseq 32,CS202002273_32,,RNAseq 100 in CCN201912131|L6 CT_2,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Exc L6 FEZF2 NPFFR2,Exc L6 FEZF2 NPFFR2,ATACseq 33,CS202002273_33,L6b,RNAseq 103-108 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Exc L3-5 FEZF2 LOC101929352,Exc L3-5 FEZF2 LOC101929352,ATACseq 34,CS202002273_34,L5 ET,RNAseq 109-111 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Exc L5-6 FEZF2 NPSR1-AS1,Exc L5-6 FEZF2 NPSR1-AS1,ATACseq 35,CS202002273_35,L5/6 NP,RNAseq 112-116 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -OPC L1-6 PDGFRA COL20A1,OPC L1-6 PDGFRA COL20A1,ATACseq 36,CS202002273_36,OPC,RNAseq 118 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Oligo L2-6 OPALIN LOC101927459,Oligo L2-6 OPALIN LOC101927459,ATACseq 37,CS202002273_37,,"RNAseq 117, 120 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Oligo L3-6 SLC1A3 LOC100506725,Oligo L3-6 SLC1A3 LOC100506725,ATACseq 38,CS202002273_38,,"RNAseq 119, 121 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Astro L1-6 FGFR3 AQP1,Astro L1-6 FGFR3 AQP1,ATACseq 39,CS202002273_39,,"RNAseq 122, 124 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Astro L1 FGFR3 SERPINI2,Astro L1 FGFR3 SERPINI2,ATACseq 40,CS202002273_40,,RNAseq 123 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Glia L1-5 NOSTRIN MECOM,Glia L1-5 NOSTRIN MECOM,ATACseq 41,CS202002273_41,,RNAseq 125-126 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Micro L1-6 TYROBP CD74,Micro L1-6 TYROBP CD74,ATACseq 42,CS202002273_42,Microglia-PVM,RNAseq 127 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq, -Lamp5,Lamp5,"ATACseq 01, 03",CS202002273_43,Lamp5,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_1|CS202002273_3 -Sncg,Sncg,"ATACseq 02, 04",CS202002273_44,Sncg,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_2|CS202002273_4 -Vip,Vip,ATACseq 05-07,CS202002273_45,Vip,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_5|CS202002273_6|CS202002273_7 -Sst,Sst,ATACseq 09-13,CS202002273_46,Sst,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_9|CS202002273_10|CS202002273_11|CS202002273_12|CS202002273_13 -Pvalb,Pvalb,ATACseq 14-18,CS202002273_47,Pvalb,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_14|CS202002273_15|CS202002273_16|CS202002273_17|CS202002273_18 -L2/3 IT,L2/3 IT,ATACseq 19-25,CS202002273_48,L2/3 IT,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_19|CS202002273_20|CS202002273_21|CS202002273_22|CS202002273_23|CS202002273_24|CS202002273_25 -L5 IT,L5 IT,ATACseq 26-28,CS202002273_49,L5 IT,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_26|CS202002273_27|CS202002273_28 -Astrocyte,Astrocyte,ATACseq 39-40,CS202002273_50,Astrocyte,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_39|CS202002273_40 -Non-neuronal,Non-neuronal,ATACseq 36-40,CS202002273_51,Non-neuronal,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_36|CS202002273_37|CS202002273_38|CS202002273_39|CS202002273_40 -Neuronal: GABAergic,Neuronal: GABAergic,ATACseq 01-18,CS202002273_52,Neuronal: GABAergic,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_1|CS202002273_2|CS202002273_3|CS202002273_4|CS202002273_5|CS202002273_6|CS202002273_7|CS202002273_8|CS202002273_9|CS202002273_10|CS202002273_11|CS202002273_12|CS202002273_13|CS202002273_14|CS202002273_15|CS202002273_16|CS202002273_17|CS202002273_18 -Neuronal: Glutamatergic,Neuronal: Glutamatergic,ATACseq 19-35,CS202002273_53,Neuronal: Glutamatergic,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_19|CS202002273_20|CS202002273_21|CS202002273_22|CS202002273_23|CS202002273_24|CS202002273_25|CS202002273_26|CS202002273_27|CS202002273_28|CS202002273_29|CS202002273_30|CS202002273_31|CS202002273_32|CS202002273_33|CS202002273_34|CS202002273_35 -Non-neural,Non-neural,ATACseq 41-42,CS202002273_54,Non-neural,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_41|CS202002273_42 -CGE/PoA,CGE/PoA,ATACseq 01-07,CS202002273_55,CGE/PoA,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_1|CS202002273_2|CS202002273_3|CS202002273_4|CS202002273_5|CS202002273_6|CS202002273_7 -MGE,MGE,ATACseq 08-18,CS202002273_56,MGE,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_8|CS202002273_9|CS202002273_10|CS202002273_11|CS202002273_12|CS202002273_13|CS202002273_14|CS202002273_15|CS202002273_16|CS202002273_17|CS202002273_18 -IT projecting,IT projecting,ATACseq 19-30,CS202002273_57,IT projecting,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_19|CS202002273_20|CS202002273_21|CS202002273_22|CS202002273_23|CS202002273_24|CS202002273_25|CS202002273_26|CS202002273_27|CS202002273_28|CS202002273_29|CS202002273_30 -Non-IT projecting,Non-IT projecting,ATACseq 31-35,CS202002273_58,Non-IT projecting,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_31|CS202002273_32|CS202002273_33|CS202002273_34|CS202002273_35 -,All cells,ATACseq 01-42,CS202002273_59,,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_1|CS202002273_2|CS202002273_3|CS202002273_4|CS202002273_5|CS202002273_6|CS202002273_7|CS202002273_8|CS202002273_9|CS202002273_10|CS202002273_11|CS202002273_12|CS202002273_13|CS202002273_14|CS202002273_15|CS202002273_16|CS202002273_17|CS202002273_18|CS202002273_19|CS202002273_20|CS202002273_21|CS202002273_22|CS202002273_23|CS202002273_24|CS202002273_25|CS202002273_26|CS202002273_27|CS202002273_28|CS202002273_29|CS202002273_30|CS202002273_31|CS202002273_32|CS202002273_33|CS202002273_34|CS202002273_35|CS202002273_36|CS202002273_37|CS202002273_38|CS202002273_39|CS202002273_40|CS202002273_41|CS202002273_42 \ No newline at end of file +cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions,cell_type_card +Inh L1-6 LAMP5 KIRREL,Inh L1-6 LAMP5 KIRREL,ATACseq 01,CS202002273_1,,RNAseq 001-006 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Inh L1 GAD1 SP8,Inh L1 GAD1 SP8,ATACseq 02,CS202002273_2,,RNAseq 007-013 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Inh L1 LAMP5 NDNF,Inh L1 LAMP5 NDNF,ATACseq 03,CS202002273_3,,RNAseq 014-015 in CCN201912131|Lamp5_5,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Inh L1 GAD1 NDST4,Inh L1 GAD1 NDST4,ATACseq 04,CS202002273_4,,RNAseq 016-018 in CCN201912131|Sncg_4,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Inh L1-5 VIP KCNJ2,Inh L1-5 VIP KCNJ2,ATACseq 05,CS202002273_5,,"RNAseq 019-020, 039 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Inh L1-6 VIP IQGAP2,Inh L1-6 VIP IQGAP2,ATACseq 06,CS202002273_6,,"RNAseq 021, 027-038 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Inh L1-3 VIP NPR3,Inh L1-3 VIP NPR3,ATACseq 07,CS202002273_7,,RNAseq 022-026 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Inh L1-6 SST NPY,Inh L1-6 SST NPY,ATACseq 08,CS202002273_8,Sst Chodl,RNAseq 040 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Inh L3-5 SST EDNRA,Inh L3-5 SST EDNRA,ATACseq 09,CS202002273_9,,"RNAseq 041-042, 044-046, 049 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Inh L5-6 SST LOC101929667,Inh L5-6 SST LOC101929667,ATACseq 10,CS202002273_10,,"RNAseq 043, 048, 055-057 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Inh L1-3 SST LOC392232,Inh L1-3 SST LOC392232,ATACseq 11,CS202002273_11,,"RNAseq 047, 068 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Inh L1-3 SST LOC105379168,Inh L1-3 SST LOC105379168,ATACseq 12,CS202002273_12,,RNAseq 050-052 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Inh L5-6 SST EBPL,Inh L5-6 SST EBPL,ATACseq 13,CS202002273_13,,"RNAseq 053-054, 058 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Inh L5-6 PVALB GULP1,Inh L5-6 PVALB GULP1,ATACseq 14,CS202002273_14,,"RNAseq 059, 069-071 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Inh L5-6 PVALB LINC01057,Inh L5-6 PVALB LINC01057,ATACseq 15,CS202002273_15,,"RNAseq 060, 062 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Inh L3-5 PVALB ISG20,Inh L3-5 PVALB ISG20,ATACseq 16,CS202002273_16,,RNAseq 061 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Inh L2-5 PVALB LOC105376919,Inh L2-5 PVALB LOC105376919,ATACseq 17,CS202002273_17,,RNAseq 063-067 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Inh L1-6 PVALB COL15A1,Inh L1-6 PVALB COL15A1,ATACseq 18,CS202002273_18,Chandelier,RNAseq 072 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Exc L2 LAMP5 KCNG3,Exc L2 LAMP5 KCNG3,ATACseq 19,CS202002273_19,,RNAseq 073 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Exc L2 LINC00507 ATP7B,Exc L2 LINC00507 ATP7B,ATACseq 20,CS202002273_20,,RNAseq 074 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Exc L2 LINC00507 GLRA3,Exc L2 LINC00507 GLRA3,ATACseq 21,CS202002273_21,,RNAseq 075 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Exc L2-3 RORB RTKN2,Exc L2-3 RORB RTKN2,ATACseq 22,CS202002273_22,,RNAseq 076 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Exc L2-3 LINC00507 DSG3,Exc L2-3 LINC00507 DSG3,ATACseq 23,CS202002273_23,,RNAseq 077 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Exc L3 LAMP5 MIR3976HG,Exc L3 LAMP5 MIR3976HG,ATACseq 24,CS202002273_24,,"RNAseq 078, 081 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Exc L2-3 RORB VIPR2,Exc L2-3 RORB VIPR2,ATACseq 25,CS202002273_25,,"RNAseq 079-080, 083 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Exc L3-5 RORB COL22A1,Exc L3-5 RORB COL22A1,ATACseq 26,CS202002273_26,,"RNAseq 082, 085-086, 091 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Exc L5-6 THEMIS TMEM18,Exc L5-6 THEMIS TMEM18,ATACseq 27,CS202002273_27,,"RNAseq 084, 088, 092 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Exc L3-5 RORB LOC105374972,Exc L3-5 RORB LOC105374972,ATACseq 28,CS202002273_28,,"RNAseq 087, 089-090 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Exc L6 THEMIS LINC00343,Exc L6 THEMIS LINC00343,ATACseq 29,CS202002273_29,L6 IT,RNAseq 093-095 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Exc L5-6 THEMIS SMYD1,Exc L5-6 THEMIS SMYD1,ATACseq 30,CS202002273_30,L6 IT Car3,RNAseq 096 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Exc L5-6 FEZF2 LOC105376596,Exc L5-6 FEZF2 LOC105376596,ATACseq 31,CS202002273_31,L6 CT,"RNAseq 097-099, 101-102 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Exc L5-6 FEZF2 C9orf135-AS1,Exc L5-6 FEZF2 C9orf135-AS1,ATACseq 32,CS202002273_32,,RNAseq 100 in CCN201912131|L6 CT_2,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Exc L6 FEZF2 NPFFR2,Exc L6 FEZF2 NPFFR2,ATACseq 33,CS202002273_33,L6b,RNAseq 103-108 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Exc L3-5 FEZF2 LOC101929352,Exc L3-5 FEZF2 LOC101929352,ATACseq 34,CS202002273_34,L5 ET,RNAseq 109-111 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Exc L5-6 FEZF2 NPSR1-AS1,Exc L5-6 FEZF2 NPSR1-AS1,ATACseq 35,CS202002273_35,L5/6 NP,RNAseq 112-116 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +OPC L1-6 PDGFRA COL20A1,OPC L1-6 PDGFRA COL20A1,ATACseq 36,CS202002273_36,OPC,RNAseq 118 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Oligo L2-6 OPALIN LOC101927459,Oligo L2-6 OPALIN LOC101927459,ATACseq 37,CS202002273_37,,"RNAseq 117, 120 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Oligo L3-6 SLC1A3 LOC100506725,Oligo L3-6 SLC1A3 LOC100506725,ATACseq 38,CS202002273_38,,"RNAseq 119, 121 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Astro L1-6 FGFR3 AQP1,Astro L1-6 FGFR3 AQP1,ATACseq 39,CS202002273_39,,"RNAseq 122, 124 in CCN201912131",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Astro L1 FGFR3 SERPINI2,Astro L1 FGFR3 SERPINI2,ATACseq 40,CS202002273_40,,RNAseq 123 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Glia L1-5 NOSTRIN MECOM,Glia L1-5 NOSTRIN MECOM,ATACseq 41,CS202002273_41,,RNAseq 125-126 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Micro L1-6 TYROBP CD74,Micro L1-6 TYROBP CD74,ATACseq 42,CS202002273_42,Microglia-PVM,RNAseq 127 in CCN201912131,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,,No +Lamp5,Lamp5,"ATACseq 01, 03",CS202002273_43,Lamp5,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_1|CS202002273_3,No +Sncg,Sncg,"ATACseq 02, 04",CS202002273_44,Sncg,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_2|CS202002273_4,No +Vip,Vip,ATACseq 05-07,CS202002273_45,Vip,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_5|CS202002273_6|CS202002273_7,No +Sst,Sst,ATACseq 09-13,CS202002273_46,Sst,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_9|CS202002273_10|CS202002273_11|CS202002273_12|CS202002273_13,No +Pvalb,Pvalb,ATACseq 14-18,CS202002273_47,Pvalb,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_14|CS202002273_15|CS202002273_16|CS202002273_17|CS202002273_18,No +L2/3 IT,L2/3 IT,ATACseq 19-25,CS202002273_48,L2/3 IT,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_19|CS202002273_20|CS202002273_21|CS202002273_22|CS202002273_23|CS202002273_24|CS202002273_25,No +L5 IT,L5 IT,ATACseq 26-28,CS202002273_49,L5 IT,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_26|CS202002273_27|CS202002273_28,No +Astrocyte,Astrocyte,ATACseq 39-40,CS202002273_50,Astrocyte,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_39|CS202002273_40,No +Non-neuronal,Non-neuronal,ATACseq 36-40,CS202002273_51,Non-neuronal,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_36|CS202002273_37|CS202002273_38|CS202002273_39|CS202002273_40,No +Neuronal: GABAergic,Neuronal: GABAergic,ATACseq 01-18,CS202002273_52,Neuronal: GABAergic,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_1|CS202002273_2|CS202002273_3|CS202002273_4|CS202002273_5|CS202002273_6|CS202002273_7|CS202002273_8|CS202002273_9|CS202002273_10|CS202002273_11|CS202002273_12|CS202002273_13|CS202002273_14|CS202002273_15|CS202002273_16|CS202002273_17|CS202002273_18,No +Neuronal: Glutamatergic,Neuronal: Glutamatergic,ATACseq 19-35,CS202002273_53,Neuronal: Glutamatergic,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_19|CS202002273_20|CS202002273_21|CS202002273_22|CS202002273_23|CS202002273_24|CS202002273_25|CS202002273_26|CS202002273_27|CS202002273_28|CS202002273_29|CS202002273_30|CS202002273_31|CS202002273_32|CS202002273_33|CS202002273_34|CS202002273_35,No +Non-neural,Non-neural,ATACseq 41-42,CS202002273_54,Non-neural,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_41|CS202002273_42,No +CGE/PoA,CGE/PoA,ATACseq 01-07,CS202002273_55,CGE/PoA,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_1|CS202002273_2|CS202002273_3|CS202002273_4|CS202002273_5|CS202002273_6|CS202002273_7,No +MGE,MGE,ATACseq 08-18,CS202002273_56,MGE,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_8|CS202002273_9|CS202002273_10|CS202002273_11|CS202002273_12|CS202002273_13|CS202002273_14|CS202002273_15|CS202002273_16|CS202002273_17|CS202002273_18,No +IT projecting,IT projecting,ATACseq 19-30,CS202002273_57,IT projecting,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_19|CS202002273_20|CS202002273_21|CS202002273_22|CS202002273_23|CS202002273_24|CS202002273_25|CS202002273_26|CS202002273_27|CS202002273_28|CS202002273_29|CS202002273_30,No +Non-IT projecting,Non-IT projecting,ATACseq 31-35,CS202002273_58,Non-IT projecting,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_31|CS202002273_32|CS202002273_33|CS202002273_34|CS202002273_35,No +All cells,All cells,ATACseq 01-42,CS202002273_59,,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002273,Human,ATACseq,CS202002273_1|CS202002273_2|CS202002273_3|CS202002273_4|CS202002273_5|CS202002273_6|CS202002273_7|CS202002273_8|CS202002273_9|CS202002273_10|CS202002273_11|CS202002273_12|CS202002273_13|CS202002273_14|CS202002273_15|CS202002273_16|CS202002273_17|CS202002273_18|CS202002273_19|CS202002273_20|CS202002273_21|CS202002273_22|CS202002273_23|CS202002273_24|CS202002273_25|CS202002273_26|CS202002273_27|CS202002273_28|CS202002273_29|CS202002273_30|CS202002273_31|CS202002273_32|CS202002273_33|CS202002273_34|CS202002273_35|CS202002273_36|CS202002273_37|CS202002273_38|CS202002273_39|CS202002273_40|CS202002273_41|CS202002273_42,No \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202002274.csv b/src/dendrograms/nomenclature_table_CCN202002274.csv index e58464ba..53158e1e 100644 --- a/src/dendrograms/nomenclature_table_CCN202002274.csv +++ b/src/dendrograms/nomenclature_table_CCN202002274.csv @@ -1,48 +1,48 @@ -cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions -Inh LAMP5 COL5A2,Inh LAMP5 COL5A2,DNAm 01,CS202002274_1,,RNAseq 02-03 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Inh LAMP5 CTTNBP2,Inh LAMP5 CTTNBP2,DNAm 02,CS202002274_2,Lamp5 Lhx6,RNAseq 04 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Inh LAMP5 PBX3,Inh LAMP5 PBX3,DNAm 03,CS202002274_3,,RNAseq 05-06 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Inh GAD1 ZC4H2,Inh GAD1 ZC4H2,DNAm 04,CS202002274_4,,"RNAseq 07-12, 26 in CCN201912132",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Inh GAD1 THSD7B,Inh GAD1 THSD7B,DNAm 05,CS202002274_5,,RNAseq 13-14 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Inh VIP ARHGAP18,Inh VIP ARHGAP18,DNAm 06,CS202002274_6,,"RNAseq 15, 24-25 in CCN201912132",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Inh VIP LOC100397259,Inh VIP LOC100397259,DNAm 07,CS202002274_7,,RNAseq 16-17 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Inh VIP FIGN,Inh VIP FIGN,DNAm 08,CS202002274_8,,RNAseq 18-20 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Inh VIP DACH2,Inh VIP DACH2,DNAm 09,CS202002274_9,,RNAseq 21-23 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Inh SST ABI3BP,Inh SST ABI3BP,DNAm 10,CS202002274_10,,"RNAseq 01, 30-36, 47 in CCN201912132",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Inh SST COL11A1,Inh SST COL11A1,DNAm 11,CS202002274_11,,"RNAseq 27-29, 37, 40 in CCN201912132",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Inh SST AKAP2,Inh SST AKAP2,DNAm 12,CS202002274_12,,RNAseq 38-39 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Inh PVALB CDON,Inh PVALB CDON,DNAm 13,CS202002274_13,,"RNAseq 41, 45-46, 51 in CCN201912132",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Inh PVALB IGF2BP2,Inh PVALB IGF2BP2,DNAm 14,CS202002274_14,,RNAseq 42-44 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Inh PVALB EYS,Inh PVALB EYS,DNAm 15,CS202002274_15,,RNAseq 48-50 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Inh PVALB FAM19A4,Inh PVALB FAM19A4,DNAm 16,CS202002274_16,Chandelier,RNAseq 52 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Exc THEMIS ACTN2,Exc THEMIS ACTN2,DNAm 17,CS202002274_17,,RNAseq 53 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Exc RORB LOC108588466,Exc RORB LOC108588466,DNAm 18,CS202002274_18,L2/3 IT,RNAseq 54-56 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Exc THEMIS HS3ST5,Exc THEMIS HS3ST5,DNAm 19,CS202002274_19,L6 IT,RNAseq 57-60 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Exc RORB LOC108593203,Exc RORB LOC108593203,DNAm 20,CS202002274_20,,"RNAseq 61, 63 in CCN201912132",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Exc RORB ANTXR2,Exc RORB ANTXR2,DNAm 21,CS202002274_21,,"RNAseq 62, 64 in CCN201912132",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Exc RORB PAPSS2,Exc RORB PAPSS2,DNAm 22,CS202002274_22,,RNAseq 65 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Exc RORB TLL1,Exc RORB TLL1,DNAm 23,CS202002274_23,,RNAseq 66-67 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Exc RORB PCED1B,Exc RORB PCED1B,DNAm 24,CS202002274_24,,RNAseq 68 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Exc FEZF2 PIEZO2,Exc FEZF2 PIEZO2,DNAm 25,CS202002274_25,L5 ET,RNAseq 69-71 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Exc FEZF2 BMP5,Exc FEZF2 BMP5,DNAm 26,CS202002274_26,,RNAseq 72 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Exc FEZF2 NRP1,Exc FEZF2 NRP1,DNAm 27,CS202002274_27,,RNAseq 73 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Exc FEZF2 ARSJ,Exc FEZF2 ARSJ,DNAm 28,CS202002274_28,L6b,RNAseq 74 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Exc THEMIS CENPP,Exc THEMIS CENPP,DNAm 29,CS202002274_29,L6 IT Car3,RNAseq 75 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Exc FEZF2 TSHZ2,Exc FEZF2 TSHZ2,DNAm 30,CS202002274_30,L5/6 NP,RNAseq 76 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Glia SLC1A3 LOC103788313,Glia SLC1A3 LOC103788313,DNAm 31,CS202002274_31,,"RNAseq 77, 94 in CCN201912132",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Glia OPALIN ST18,Glia OPALIN ST18,DNAm 32,CS202002274_32,,"RNAseq 78, 83-84, 88-93 in CCN201912132",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Glia RORB SLC1A2,Glia RORB SLC1A2,DNAm 33,CS202002274_33,,RNAseq 79-87 in CCN201912132|Astrocyte+Endothelial,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm, -Lamp5,Lamp5,DNAm 01-03,CS202002274_34,Lamp5,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_1|CS202002274_2|CS202002274_3 -Sncg,Sncg,DNAm 04-05,CS202002274_35,Sncg,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_4|CS202002274_5 -Vip,Vip,DNAm 06-09,CS202002274_36,Vip,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_6|CS202002274_7|CS202002274_8|CS202002274_9 -Sst,Sst,DNAm 10-12,CS202002274_37,Sst,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_10|CS202002274_11|CS202002274_12 -Pvalb,Pvalb,DNAm 13-16,CS202002274_38,Pvalb,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_13|CS202002274_14|CS202002274_15|CS202002274_16 -L5 IT,L5 IT,DNAm 20-24,CS202002274_39,L5 IT,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_20|CS202002274_21|CS202002274_22|CS202002274_23|CS202002274_24 -L6 CT,L6 CT,DNAm 26-27,CS202002274_40,L6 CT,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_26|CS202002274_27 -Neuronal: GABAergic,Neuronal: GABAergic,DNAm 01-16,CS202002274_41,Neuronal: GABAergic,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_1|CS202002274_2|CS202002274_3|CS202002274_4|CS202002274_5|CS202002274_6|CS202002274_7|CS202002274_8|CS202002274_9|CS202002274_10|CS202002274_11|CS202002274_12|CS202002274_13|CS202002274_14|CS202002274_15|CS202002274_16 -Neuronal: Glutamatergic,Neuronal: Glutamatergic,DNAm 17-30,CS202002274_42,Neuronal: Glutamatergic,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_17|CS202002274_18|CS202002274_19|CS202002274_20|CS202002274_21|CS202002274_22|CS202002274_23|CS202002274_24|CS202002274_25|CS202002274_26|CS202002274_27|CS202002274_28|CS202002274_29|CS202002274_30 -CGE/PoA,CGE/PoA,DNAm 01-09,CS202002274_43,CGE/PoA,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_1|CS202002274_2|CS202002274_3|CS202002274_4|CS202002274_5|CS202002274_6|CS202002274_7|CS202002274_8|CS202002274_9 -MGE,MGE,DNAm 10-16,CS202002274_44,MGE,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_10|CS202002274_11|CS202002274_12|CS202002274_13|CS202002274_14|CS202002274_15|CS202002274_16 -IT projecting,IT projecting,"DNAm 17-24, 29",CS202002274_45,IT projecting,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_17|CS202002274_18|CS202002274_19|CS202002274_20|CS202002274_21|CS202002274_22|CS202002274_23|CS202002274_24|CS202002274_29 -Non-IT projecting,Non-IT projecting,"DNAm 25-28, 30",CS202002274_46,Non-IT projecting,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_25|CS202002274_26|CS202002274_27|CS202002274_28|CS202002274_30 -,All cells,DNAm 01-33,CS202002274_47,,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_1|CS202002274_2|CS202002274_3|CS202002274_4|CS202002274_5|CS202002274_6|CS202002274_7|CS202002274_8|CS202002274_9|CS202002274_10|CS202002274_11|CS202002274_12|CS202002274_13|CS202002274_14|CS202002274_15|CS202002274_16|CS202002274_17|CS202002274_18|CS202002274_19|CS202002274_20|CS202002274_21|CS202002274_22|CS202002274_23|CS202002274_24|CS202002274_25|CS202002274_26|CS202002274_27|CS202002274_28|CS202002274_29|CS202002274_30|CS202002274_31|CS202002274_32|CS202002274_33 \ No newline at end of file +cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions,cell_type_card +Inh LAMP5 COL5A2,Inh LAMP5 COL5A2,DNAm 01,CS202002274_1,,RNAseq 02-03 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,,No +Inh LAMP5 CTTNBP2,Inh LAMP5 CTTNBP2,DNAm 02,CS202002274_2,Lamp5 Lhx6,RNAseq 04 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,,No +Inh LAMP5 PBX3,Inh LAMP5 PBX3,DNAm 03,CS202002274_3,,RNAseq 05-06 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,,No +Inh GAD1 ZC4H2,Inh GAD1 ZC4H2,DNAm 04,CS202002274_4,,"RNAseq 07-12, 26 in CCN201912132",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,,No +Inh GAD1 THSD7B,Inh GAD1 THSD7B,DNAm 05,CS202002274_5,,RNAseq 13-14 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,,No +Inh VIP ARHGAP18,Inh VIP ARHGAP18,DNAm 06,CS202002274_6,,"RNAseq 15, 24-25 in CCN201912132",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,,No +Inh VIP LOC100397259,Inh VIP LOC100397259,DNAm 07,CS202002274_7,,RNAseq 16-17 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,,No +Inh VIP FIGN,Inh VIP FIGN,DNAm 08,CS202002274_8,,RNAseq 18-20 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,,No +Inh VIP DACH2,Inh VIP DACH2,DNAm 09,CS202002274_9,,RNAseq 21-23 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,,No +Inh SST ABI3BP,Inh SST ABI3BP,DNAm 10,CS202002274_10,,"RNAseq 01, 30-36, 47 in CCN201912132",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,,No +Inh SST COL11A1,Inh SST COL11A1,DNAm 11,CS202002274_11,,"RNAseq 27-29, 37, 40 in CCN201912132",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,,No +Inh SST AKAP2,Inh SST AKAP2,DNAm 12,CS202002274_12,,RNAseq 38-39 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,,No +Inh PVALB CDON,Inh PVALB CDON,DNAm 13,CS202002274_13,,"RNAseq 41, 45-46, 51 in CCN201912132",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,,No +Inh PVALB IGF2BP2,Inh PVALB IGF2BP2,DNAm 14,CS202002274_14,,RNAseq 42-44 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,,No +Inh PVALB EYS,Inh PVALB EYS,DNAm 15,CS202002274_15,,RNAseq 48-50 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,,No +Inh PVALB FAM19A4,Inh PVALB FAM19A4,DNAm 16,CS202002274_16,Chandelier,RNAseq 52 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,,No +Exc THEMIS ACTN2,Exc THEMIS ACTN2,DNAm 17,CS202002274_17,,RNAseq 53 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,,No +Exc RORB LOC108588466,Exc RORB LOC108588466,DNAm 18,CS202002274_18,L2/3 IT,RNAseq 54-56 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,,No +Exc THEMIS HS3ST5,Exc THEMIS HS3ST5,DNAm 19,CS202002274_19,L6 IT,RNAseq 57-60 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,,No +Exc RORB LOC108593203,Exc RORB LOC108593203,DNAm 20,CS202002274_20,,"RNAseq 61, 63 in CCN201912132",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,,No +Exc RORB ANTXR2,Exc RORB ANTXR2,DNAm 21,CS202002274_21,,"RNAseq 62, 64 in CCN201912132",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,,No +Exc RORB PAPSS2,Exc RORB PAPSS2,DNAm 22,CS202002274_22,,RNAseq 65 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,,No +Exc RORB TLL1,Exc RORB TLL1,DNAm 23,CS202002274_23,,RNAseq 66-67 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,,No +Exc RORB PCED1B,Exc RORB PCED1B,DNAm 24,CS202002274_24,,RNAseq 68 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,,No +Exc FEZF2 PIEZO2,Exc FEZF2 PIEZO2,DNAm 25,CS202002274_25,L5 ET,RNAseq 69-71 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,,No +Exc FEZF2 BMP5,Exc FEZF2 BMP5,DNAm 26,CS202002274_26,,RNAseq 72 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,,No +Exc FEZF2 NRP1,Exc FEZF2 NRP1,DNAm 27,CS202002274_27,,RNAseq 73 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,,No +Exc FEZF2 ARSJ,Exc FEZF2 ARSJ,DNAm 28,CS202002274_28,L6b,RNAseq 74 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,,No +Exc THEMIS CENPP,Exc THEMIS CENPP,DNAm 29,CS202002274_29,L6 IT Car3,RNAseq 75 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,,No +Exc FEZF2 TSHZ2,Exc FEZF2 TSHZ2,DNAm 30,CS202002274_30,L5/6 NP,RNAseq 76 in CCN201912132,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,,No +Glia SLC1A3 LOC103788313,Glia SLC1A3 LOC103788313,DNAm 31,CS202002274_31,,"RNAseq 77, 94 in CCN201912132",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,,No +Glia OPALIN ST18,Glia OPALIN ST18,DNAm 32,CS202002274_32,,"RNAseq 78, 83-84, 88-93 in CCN201912132",Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,,No +Glia RORB SLC1A2,Glia RORB SLC1A2,DNAm 33,CS202002274_33,,RNAseq 79-87 in CCN201912132|Astrocyte+Endothelial,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,,No +Lamp5,Lamp5,DNAm 01-03,CS202002274_34,Lamp5,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_1|CS202002274_2|CS202002274_3,No +Sncg,Sncg,DNAm 04-05,CS202002274_35,Sncg,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_4|CS202002274_5,No +Vip,Vip,DNAm 06-09,CS202002274_36,Vip,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_6|CS202002274_7|CS202002274_8|CS202002274_9,No +Sst,Sst,DNAm 10-12,CS202002274_37,Sst,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_10|CS202002274_11|CS202002274_12,No +Pvalb,Pvalb,DNAm 13-16,CS202002274_38,Pvalb,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_13|CS202002274_14|CS202002274_15|CS202002274_16,No +L5 IT,L5 IT,DNAm 20-24,CS202002274_39,L5 IT,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_20|CS202002274_21|CS202002274_22|CS202002274_23|CS202002274_24,No +L6 CT,L6 CT,DNAm 26-27,CS202002274_40,L6 CT,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_26|CS202002274_27,No +Neuronal: GABAergic,Neuronal: GABAergic,DNAm 01-16,CS202002274_41,Neuronal: GABAergic,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_1|CS202002274_2|CS202002274_3|CS202002274_4|CS202002274_5|CS202002274_6|CS202002274_7|CS202002274_8|CS202002274_9|CS202002274_10|CS202002274_11|CS202002274_12|CS202002274_13|CS202002274_14|CS202002274_15|CS202002274_16,No +Neuronal: Glutamatergic,Neuronal: Glutamatergic,DNAm 17-30,CS202002274_42,Neuronal: Glutamatergic,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_17|CS202002274_18|CS202002274_19|CS202002274_20|CS202002274_21|CS202002274_22|CS202002274_23|CS202002274_24|CS202002274_25|CS202002274_26|CS202002274_27|CS202002274_28|CS202002274_29|CS202002274_30,No +CGE/PoA,CGE/PoA,DNAm 01-09,CS202002274_43,CGE/PoA,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_1|CS202002274_2|CS202002274_3|CS202002274_4|CS202002274_5|CS202002274_6|CS202002274_7|CS202002274_8|CS202002274_9,No +MGE,MGE,DNAm 10-16,CS202002274_44,MGE,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_10|CS202002274_11|CS202002274_12|CS202002274_13|CS202002274_14|CS202002274_15|CS202002274_16,No +IT projecting,IT projecting,"DNAm 17-24, 29",CS202002274_45,IT projecting,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_17|CS202002274_18|CS202002274_19|CS202002274_20|CS202002274_21|CS202002274_22|CS202002274_23|CS202002274_24|CS202002274_29,No +Non-IT projecting,Non-IT projecting,"DNAm 25-28, 30",CS202002274_46,Non-IT projecting,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_25|CS202002274_26|CS202002274_27|CS202002274_28|CS202002274_30,No +All cells,All cells,DNAm 01-33,CS202002274_47,,,Wei Tian,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002274,Marmoset,DNAm,CS202002274_1|CS202002274_2|CS202002274_3|CS202002274_4|CS202002274_5|CS202002274_6|CS202002274_7|CS202002274_8|CS202002274_9|CS202002274_10|CS202002274_11|CS202002274_12|CS202002274_13|CS202002274_14|CS202002274_15|CS202002274_16|CS202002274_17|CS202002274_18|CS202002274_19|CS202002274_20|CS202002274_21|CS202002274_22|CS202002274_23|CS202002274_24|CS202002274_25|CS202002274_26|CS202002274_27|CS202002274_28|CS202002274_29|CS202002274_30|CS202002274_31|CS202002274_32|CS202002274_33,No \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202002275.csv b/src/dendrograms/nomenclature_table_CCN202002275.csv index 5fd6df8a..702cb7ee 100644 --- a/src/dendrograms/nomenclature_table_CCN202002275.csv +++ b/src/dendrograms/nomenclature_table_CCN202002275.csv @@ -1,36 +1,36 @@ -cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions -Inh LAMP5 KIT,Inh LAMP5 KIT,ATACseq 01,CS202002275_1,Lamp5,RNAseq 02-06 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -Inh GAD1 THSD7B,Inh GAD1 THSD7B,ATACseq 02,CS202002275_2,Sncg,RNAseq 07-15 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -Inh VIP LOC103791740,Inh VIP LOC103791740,ATACseq 03,CS202002275_3,Vip,RNAseq 16-26 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -Inh SST ABI3BP,Inh SST ABI3BP,ATACseq 04,CS202002275_4,Sst,"RNAseq 01, 27-40, 47 in CCN201912132",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -Inh PVALB MYO5B,Inh PVALB MYO5B,ATACseq 05,CS202002275_5,,"RNAseq 41-46, 48-51 in CCN201912132",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -Inh PVALB FAM19A4,Inh PVALB FAM19A4,ATACseq 06,CS202002275_6,Chandelier,RNAseq 52 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -Exc RORB NDST3,Exc RORB NDST3,ATACseq 07,CS202002275_7,,"RNAseq 53, 55-56 in CCN201912132",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -Exc RORB LOC108588466,Exc RORB LOC108588466,ATACseq 08,CS202002275_8,,"RNAseq 54, 61 in CCN201912132",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -Exc THEMIS HS3ST5,Exc THEMIS HS3ST5,ATACseq 09,CS202002275_9,L6 IT,RNAseq 58-60 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -Exc RORB ANKRD27,Exc RORB ANKRD27,ATACseq 10,CS202002275_10,,RNAseq 62 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -Exc RORB DCC,Exc RORB DCC,ATACseq 11,CS202002275_11,,"RNAseq 63, 65 in CCN201912132",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -Exc RORB USH1C,Exc RORB USH1C,ATACseq 12,CS202002275_12,,RNAseq 64 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -Exc RORB TLL1,Exc RORB TLL1,ATACseq 13,CS202002275_13,,RNAseq 66-67 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -Exc RORB HACL1,Exc RORB HACL1,ATACseq 14,CS202002275_14,,RNAseq 68 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -Exc FEZF2 PIEZO2,Exc FEZF2 PIEZO2,ATACseq 15,CS202002275_15,L5 ET,RNAseq 69-71 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -Exc FEZF2 NRP1,Exc FEZF2 NRP1,ATACseq 16,CS202002275_16,L6 CT,RNAseq 72-73 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -Exc FEZF2 ARSJ,Exc FEZF2 ARSJ,ATACseq 17,CS202002275_17,L6b,RNAseq 74 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -Exc THEMIS NTNG2,Exc THEMIS NTNG2,ATACseq 18,CS202002275_18,L6 IT Car3,RNAseq 75 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -Exc FEZF2 CRYM,Exc FEZF2 CRYM,ATACseq 19,CS202002275_19,L5/6 NP,RNAseq 76 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -Oligo OPALIN ST18,Oligo OPALIN ST18,ATACseq 20,CS202002275_20,Oligodendrocyte,"RNAseq 77, 83-84 in CCN201912132",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -OPC PDGFRA VCAN,OPC PDGFRA VCAN,ATACseq 21,CS202002275_21,OPC,RNAseq 78 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -Astro RORB SLC1A2,Astro RORB SLC1A2,ATACseq 22,CS202002275_22,Astrocyte,RNAseq 79-82 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -Glia SLC1A3 FLT1,Glia SLC1A3 FLT1,ATACseq 23,CS202002275_23,Non-neural,RNAseq 85-94 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq, -Pvalb,Pvalb,ATACseq 05-06,CS202002275_24,Pvalb,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_5|CS202002275_6 -L2/3 IT,L2/3 IT,ATACseq 07-08,CS202002275_25,L2/3 IT,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_7|CS202002275_8 -L5 IT,L5 IT,ATACseq 10-14,CS202002275_26,L5 IT,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_10|CS202002275_11|CS202002275_12|CS202002275_13|CS202002275_14 -Oligodendrocyte-OPC,Oligodendrocyte-OPC,ATACseq 20-21,CS202002275_27,Oligodendrocyte-OPC,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_20|CS202002275_21 -Non-neuronal,Non-neuronal,ATACseq 20-22,CS202002275_28,Non-neuronal,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_20|CS202002275_21|CS202002275_22 -Neuronal: GABAergic,Neuronal: GABAergic,ATACseq 01-06,CS202002275_29,Neuronal: GABAergic,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_1|CS202002275_2|CS202002275_3|CS202002275_4|CS202002275_5|CS202002275_6 -Neuronal: Glutamatergic,Neuronal: Glutamatergic,ATACseq 07-19,CS202002275_30,Neuronal: Glutamatergic,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_7|CS202002275_8|CS202002275_9|CS202002275_10|CS202002275_11|CS202002275_12|CS202002275_13|CS202002275_14|CS202002275_15|CS202002275_16|CS202002275_17|CS202002275_18|CS202002275_19 -CGE/PoA,CGE/PoA,ATACseq 01-03,CS202002275_31,CGE/PoA,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_1|CS202002275_2|CS202002275_3 -MGE,MGE,ATACseq 04-06,CS202002275_32,MGE,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_4|CS202002275_5|CS202002275_6 -IT projecting,IT projecting,"ATACseq 07-14, 18",CS202002275_33,IT projecting,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_7|CS202002275_8|CS202002275_9|CS202002275_10|CS202002275_11|CS202002275_12|CS202002275_13|CS202002275_14|CS202002275_18 -Non-IT projecting,Non-IT projecting,"ATACseq 15-17, 19",CS202002275_34,Non-IT projecting,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_15|CS202002275_16|CS202002275_17|CS202002275_19 -,All cells,ATACseq 01-23,CS202002275_35,,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_1|CS202002275_2|CS202002275_3|CS202002275_4|CS202002275_5|CS202002275_6|CS202002275_7|CS202002275_8|CS202002275_9|CS202002275_10|CS202002275_11|CS202002275_12|CS202002275_13|CS202002275_14|CS202002275_15|CS202002275_16|CS202002275_17|CS202002275_18|CS202002275_19|CS202002275_20|CS202002275_21|CS202002275_22|CS202002275_23 \ No newline at end of file +cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions,cell_type_card +Inh LAMP5 KIT,Inh LAMP5 KIT,ATACseq 01,CS202002275_1,Lamp5,RNAseq 02-06 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,,No +Inh GAD1 THSD7B,Inh GAD1 THSD7B,ATACseq 02,CS202002275_2,Sncg,RNAseq 07-15 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,,No +Inh VIP LOC103791740,Inh VIP LOC103791740,ATACseq 03,CS202002275_3,Vip,RNAseq 16-26 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,,No +Inh SST ABI3BP,Inh SST ABI3BP,ATACseq 04,CS202002275_4,Sst,"RNAseq 01, 27-40, 47 in CCN201912132",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,,No +Inh PVALB MYO5B,Inh PVALB MYO5B,ATACseq 05,CS202002275_5,,"RNAseq 41-46, 48-51 in CCN201912132",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,,No +Inh PVALB FAM19A4,Inh PVALB FAM19A4,ATACseq 06,CS202002275_6,Chandelier,RNAseq 52 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,,No +Exc RORB NDST3,Exc RORB NDST3,ATACseq 07,CS202002275_7,,"RNAseq 53, 55-56 in CCN201912132",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,,No +Exc RORB LOC108588466,Exc RORB LOC108588466,ATACseq 08,CS202002275_8,,"RNAseq 54, 61 in CCN201912132",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,,No +Exc THEMIS HS3ST5,Exc THEMIS HS3ST5,ATACseq 09,CS202002275_9,L6 IT,RNAseq 58-60 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,,No +Exc RORB ANKRD27,Exc RORB ANKRD27,ATACseq 10,CS202002275_10,,RNAseq 62 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,,No +Exc RORB DCC,Exc RORB DCC,ATACseq 11,CS202002275_11,,"RNAseq 63, 65 in CCN201912132",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,,No +Exc RORB USH1C,Exc RORB USH1C,ATACseq 12,CS202002275_12,,RNAseq 64 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,,No +Exc RORB TLL1,Exc RORB TLL1,ATACseq 13,CS202002275_13,,RNAseq 66-67 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,,No +Exc RORB HACL1,Exc RORB HACL1,ATACseq 14,CS202002275_14,,RNAseq 68 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,,No +Exc FEZF2 PIEZO2,Exc FEZF2 PIEZO2,ATACseq 15,CS202002275_15,L5 ET,RNAseq 69-71 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,,No +Exc FEZF2 NRP1,Exc FEZF2 NRP1,ATACseq 16,CS202002275_16,L6 CT,RNAseq 72-73 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,,No +Exc FEZF2 ARSJ,Exc FEZF2 ARSJ,ATACseq 17,CS202002275_17,L6b,RNAseq 74 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,,No +Exc THEMIS NTNG2,Exc THEMIS NTNG2,ATACseq 18,CS202002275_18,L6 IT Car3,RNAseq 75 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,,No +Exc FEZF2 CRYM,Exc FEZF2 CRYM,ATACseq 19,CS202002275_19,L5/6 NP,RNAseq 76 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,,No +Oligo OPALIN ST18,Oligo OPALIN ST18,ATACseq 20,CS202002275_20,Oligodendrocyte,"RNAseq 77, 83-84 in CCN201912132",Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,,No +OPC PDGFRA VCAN,OPC PDGFRA VCAN,ATACseq 21,CS202002275_21,OPC,RNAseq 78 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,,No +Astro RORB SLC1A2,Astro RORB SLC1A2,ATACseq 22,CS202002275_22,Astrocyte,RNAseq 79-82 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,,No +Glia SLC1A3 FLT1,Glia SLC1A3 FLT1,ATACseq 23,CS202002275_23,Non-neural,RNAseq 85-94 in CCN201912132,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,,No +Pvalb,Pvalb,ATACseq 05-06,CS202002275_24,Pvalb,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_5|CS202002275_6,No +L2/3 IT,L2/3 IT,ATACseq 07-08,CS202002275_25,L2/3 IT,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_7|CS202002275_8,No +L5 IT,L5 IT,ATACseq 10-14,CS202002275_26,L5 IT,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_10|CS202002275_11|CS202002275_12|CS202002275_13|CS202002275_14,No +Oligodendrocyte-OPC,Oligodendrocyte-OPC,ATACseq 20-21,CS202002275_27,Oligodendrocyte-OPC,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_20|CS202002275_21,No +Non-neuronal,Non-neuronal,ATACseq 20-22,CS202002275_28,Non-neuronal,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_20|CS202002275_21|CS202002275_22,No +Neuronal: GABAergic,Neuronal: GABAergic,ATACseq 01-06,CS202002275_29,Neuronal: GABAergic,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_1|CS202002275_2|CS202002275_3|CS202002275_4|CS202002275_5|CS202002275_6,No +Neuronal: Glutamatergic,Neuronal: Glutamatergic,ATACseq 07-19,CS202002275_30,Neuronal: Glutamatergic,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_7|CS202002275_8|CS202002275_9|CS202002275_10|CS202002275_11|CS202002275_12|CS202002275_13|CS202002275_14|CS202002275_15|CS202002275_16|CS202002275_17|CS202002275_18|CS202002275_19,No +CGE/PoA,CGE/PoA,ATACseq 01-03,CS202002275_31,CGE/PoA,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_1|CS202002275_2|CS202002275_3,No +MGE,MGE,ATACseq 04-06,CS202002275_32,MGE,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_4|CS202002275_5|CS202002275_6,No +IT projecting,IT projecting,"ATACseq 07-14, 18",CS202002275_33,IT projecting,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_7|CS202002275_8|CS202002275_9|CS202002275_10|CS202002275_11|CS202002275_12|CS202002275_13|CS202002275_14|CS202002275_18,No +Non-IT projecting,Non-IT projecting,"ATACseq 15-17, 19",CS202002275_34,Non-IT projecting,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_15|CS202002275_16|CS202002275_17|CS202002275_19,No +All cells,All cells,ATACseq 01-23,CS202002275_35,,,Blue Lake,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002275,Marmoset,ATACseq,CS202002275_1|CS202002275_2|CS202002275_3|CS202002275_4|CS202002275_5|CS202002275_6|CS202002275_7|CS202002275_8|CS202002275_9|CS202002275_10|CS202002275_11|CS202002275_12|CS202002275_13|CS202002275_14|CS202002275_15|CS202002275_16|CS202002275_17|CS202002275_18|CS202002275_19|CS202002275_20|CS202002275_21|CS202002275_22|CS202002275_23,No \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202002276.csv b/src/dendrograms/nomenclature_table_CCN202002276.csv index 3b4b3876..ef40ebfc 100644 --- a/src/dendrograms/nomenclature_table_CCN202002276.csv +++ b/src/dendrograms/nomenclature_table_CCN202002276.csv @@ -1,62 +1,62 @@ -cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions -Lamp5 Chrna7,Lamp5 Chrna7,DNAm 01,CS202002276_1,,RNAseq 001-003 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -Lamp5 Ndnf,Lamp5 Ndnf,DNAm 02,CS202002276_2,,RNAseq 004-006 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -Lamp5 Ndnf,Lamp5 Ndnf,DNAm 03,CS202002276_3,,RNAseq 005 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -Lamp5 Asph,Lamp5 Asph,DNAm 04,CS202002276_4,,RNAseq 007-008 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -Sncg Frem1,Sncg Frem1,DNAm 05,CS202002276_5,Sncg,RNAseq 009-014 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -Vip Wnt5b,Vip Wnt5b,DNAm 06,CS202002276_6,,"RNAseq 015, 021-025 in CCN202002013",Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -Vip Tac2,Vip Tac2,DNAm 07,CS202002276_7,,RNAseq 016-018 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -Vip Crh,Vip Crh,DNAm 08,CS202002276_8,,"RNAseq 019-020, 026-027 in CCN202002013",Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -Sst Chodl,Sst Chodl,DNAm 09,CS202002276_9,Sst Chodl,RNAseq 028 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -Sst Scg5,Sst Scg5,DNAm 10,CS202002276_10,,"RNAseq 029-032, 041 in CCN202002013",Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -Sst Htr1a,Sst Htr1a,DNAm 11,CS202002276_11,,RNAseq 033 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -Sst Kirrel3,Sst Kirrel3,DNAm 12,CS202002276_12,,RNAseq 034-035 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -Sst Rbp4,Sst Rbp4,DNAm 13,CS202002276_13,,"RNAseq 036-037, 046-047 in CCN202002013",Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -Sst Pcdh11x,Sst Pcdh11x,DNAm 14,CS202002276_14,,RNAseq 038-040 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -Sst 9630002D21Rik,Sst 9630002D21Rik,DNAm 15,CS202002276_15,,RNAseq 042-045 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -Pvalb Tac1,Pvalb Tac1,DNAm 16,CS202002276_16,,RNAseq 048-053 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -Pvalb Gpr149,Pvalb Gpr149,DNAm 17,CS202002276_17,,RNAseq 050 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -Pvalb Plxnc1,Pvalb Plxnc1,DNAm 18,CS202002276_18,,RNAseq 054-055 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -Pvalb Vipr2,Pvalb Vipr2,DNAm 19,CS202002276_19,Chandelier,RNAseq 056-057 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -L2/3 IT Greb1l,L2/3 IT Greb1l,DNAm 20,CS202002276_20,L2/3 IT,RNAseq 058-060 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -L5 IT Rspo1_1,L5 IT Rspo1_1,DNAm 21,CS202002276_21,,RNAseq 061 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -L5 IT Rspo1_2,L5 IT Rspo1_2,DNAm 22,CS202002276_22,,RNAseq 062 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -L5 IT S100b,L5 IT S100b,DNAm 23,CS202002276_23,,RNAseq 063-064 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -L5/6 IT Arhgap15,L5/6 IT Arhgap15,DNAm 24,CS202002276_24,,"RNAseq 065, 067 in CCN202002013",Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -L5 IT Pld5_2,L5 IT Pld5_2,DNAm 25,CS202002276_25,,RNAseq 066 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -L6 IT_2,L6 IT_2,DNAm 26,CS202002276_26,,RNAseq 068 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -L6 IT Car3,L6 IT Car3,DNAm 27,CS202002276_27,L6 IT Car3,RNAseq 069 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -L5 ET,L5 ET,DNAm 28,CS202002276_28,L5 ET,RNAseq 070-073 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -L5/6 NP CT Cdh18,L5/6 NP CT Cdh18,DNAm 29,CS202002276_29,,"RNAseq 074, 079-080 in CCN202002013",Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -L6 CT Gpr139,L6 CT Gpr139,DNAm 30,CS202002276_30,,RNAseq 075 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -L6 CT Cpa6,L6 CT Cpa6,DNAm 31,CS202002276_31,,RNAseq 076 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -L6 CT Grp,L6 CT Grp,DNAm 32,CS202002276_32,,RNAseq 077 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -L6 CT Pou3f2,L6 CT Pou3f2,DNAm 33,CS202002276_33,,RNAseq 078 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -L6b Ctgf,L6b Ctgf,DNAm 34,CS202002276_34,L6b,RNAseq 081-085 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -L5/6 NP Lypd1,L5/6 NP Lypd1,DNAm 35,CS202002276_35,L5/6 NP,RNAseq 086-088 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -OPC Pdgfra,OPC Pdgfra,DNAm 36,CS202002276_36,OPC,RNAseq 091 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -Astro Rorb Prex2,Astro Rorb Prex2,DNAm 37,CS202002276_37,Astrocyte,RNAseq 92-94 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -Oligo Plp1,Oligo Plp1,DNAm 38,CS202002276_38,Oligodendrocyte,"RNAseq 095, 097-102 in CCN202002013",Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -VLMC Lama1,VLMC Lama1,DNAm 39,CS202002276_39,,"RNAseq 104-105, 107 in CCN202002013",Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -VLMC Bnc2,VLMC Bnc2,DNAm 40,CS202002276_40,,"RNAseq 106, 108-110 in CCN202002013",Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -SMC-Peri,SMC-Peri,DNAm 41,CS202002276_41,SMC,RNAseq 111-112 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -Micro-PVM Inpp5d,Micro-PVM Inpp5d,DNAm 42,CS202002276_42,Microglia-PVM,"RNAseq 113, 115-116 in CCN202002013",Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -VLMC,VLMC,DNAm 43,CS202002276_43,VLMC,RNAseq 104-110 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm, -Lamp5,Lamp5,DNAm 01-04,CS202002276_44,Lamp5,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_1|CS202002276_2|CS202002276_3|CS202002276_4 -Vip,Vip,DNAm 06-08,CS202002276_45,Vip,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_6|CS202002276_7|CS202002276_8 -Sst,Sst,DNAm 10-15,CS202002276_46,Sst,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_10|CS202002276_11|CS202002276_12|CS202002276_13|CS202002276_14|CS202002276_15 -Pvalb,Pvalb,DNAm 16-19,CS202002276_47,Pvalb,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_16|CS202002276_17|CS202002276_18|CS202002276_19 -L4/5 IT,L4/5 IT,DNAm 21-22,CS202002276_48,L4/5 IT,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_21|CS202002276_22 -L5 IT,L5 IT,"DNAm 23, 25",CS202002276_49,L5 IT,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_23|CS202002276_25 -L6 IT,L6 IT,"DNAm 24, 26",CS202002276_50,L6 IT,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_24|CS202002276_26 -L6 CT,L6 CT,DNAm 29-33,CS202002276_51,L6 CT,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_29|CS202002276_30|CS202002276_31|CS202002276_32|CS202002276_33 -Oligodendrocyte-OPC,Oligodendrocyte-OPC,"DNAm 36, 38",CS202002276_52,Oligodendrocyte-OPC,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_36|CS202002276_38 -Non-neuronal,Non-neuronal,DNAm 36-38,CS202002276_53,Non-neuronal,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_36|CS202002276_37|CS202002276_38 -Neuronal: GABAergic,Neuronal: GABAergic,DNAm 01-19,CS202002276_54,Neuronal: GABAergic,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_1|CS202002276_2|CS202002276_3|CS202002276_4|CS202002276_5|CS202002276_6|CS202002276_7|CS202002276_8|CS202002276_9|CS202002276_10|CS202002276_11|CS202002276_12|CS202002276_13|CS202002276_14|CS202002276_15|CS202002276_16|CS202002276_17|CS202002276_18|CS202002276_19 -Neuronal: Glutamatergic,Neuronal: Glutamatergic,DNAm 20-35,CS202002276_55,Neuronal: Glutamatergic,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_20|CS202002276_21|CS202002276_22|CS202002276_23|CS202002276_24|CS202002276_25|CS202002276_26|CS202002276_27|CS202002276_28|CS202002276_29|CS202002276_30|CS202002276_31|CS202002276_32|CS202002276_33|CS202002276_34|CS202002276_35 -Non-neural,Non-neural,DNAm 39-43,CS202002276_56,Non-neural,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_39|CS202002276_40|CS202002276_41|CS202002276_42|CS202002276_43 -CGE/PoA,CGE/PoA,DNAm 01-08,CS202002276_57,CGE/PoA,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_1|CS202002276_2|CS202002276_3|CS202002276_4|CS202002276_5|CS202002276_6|CS202002276_7|CS202002276_8 -MGE,MGE,DNAm 09-19,CS202002276_58,MGE,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_9|CS202002276_10|CS202002276_11|CS202002276_12|CS202002276_13|CS202002276_14|CS202002276_15|CS202002276_16|CS202002276_17|CS202002276_18|CS202002276_19 -IT projecting,IT projecting,DNAm 20-27,CS202002276_59,IT projecting,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_20|CS202002276_21|CS202002276_22|CS202002276_23|CS202002276_24|CS202002276_25|CS202002276_26|CS202002276_27 -Non-IT projecting,Non-IT projecting,DNAm 28-35,CS202002276_60,Non-IT projecting,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_28|CS202002276_29|CS202002276_30|CS202002276_31|CS202002276_32|CS202002276_33|CS202002276_34|CS202002276_35 -,All cells,DNAm 01-43,CS202002276_61,,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_1|CS202002276_2|CS202002276_3|CS202002276_4|CS202002276_5|CS202002276_6|CS202002276_7|CS202002276_8|CS202002276_9|CS202002276_10|CS202002276_11|CS202002276_12|CS202002276_13|CS202002276_14|CS202002276_15|CS202002276_16|CS202002276_17|CS202002276_18|CS202002276_19|CS202002276_20|CS202002276_21|CS202002276_22|CS202002276_23|CS202002276_24|CS202002276_25|CS202002276_26|CS202002276_27|CS202002276_28|CS202002276_29|CS202002276_30|CS202002276_31|CS202002276_32|CS202002276_33|CS202002276_34|CS202002276_35|CS202002276_36|CS202002276_37|CS202002276_38|CS202002276_39|CS202002276_40|CS202002276_41|CS202002276_42|CS202002276_43 \ No newline at end of file +cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions,cell_type_card +Lamp5 Chrna7,Lamp5 Chrna7,DNAm 01,CS202002276_1,,RNAseq 001-003 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +Lamp5 Ndnf,Lamp5 Ndnf,DNAm 02,CS202002276_2,,RNAseq 004-006 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +Lamp5 Ndnf,Lamp5 Ndnf,DNAm 03,CS202002276_3,,RNAseq 005 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +Lamp5 Asph,Lamp5 Asph,DNAm 04,CS202002276_4,,RNAseq 007-008 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +Sncg Frem1,Sncg Frem1,DNAm 05,CS202002276_5,Sncg,RNAseq 009-014 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +Vip Wnt5b,Vip Wnt5b,DNAm 06,CS202002276_6,,"RNAseq 015, 021-025 in CCN202002013",Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +Vip Tac2,Vip Tac2,DNAm 07,CS202002276_7,,RNAseq 016-018 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +Vip Crh,Vip Crh,DNAm 08,CS202002276_8,,"RNAseq 019-020, 026-027 in CCN202002013",Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +Sst Chodl,Sst Chodl,DNAm 09,CS202002276_9,Sst Chodl,RNAseq 028 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +Sst Scg5,Sst Scg5,DNAm 10,CS202002276_10,,"RNAseq 029-032, 041 in CCN202002013",Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +Sst Htr1a,Sst Htr1a,DNAm 11,CS202002276_11,,RNAseq 033 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +Sst Kirrel3,Sst Kirrel3,DNAm 12,CS202002276_12,,RNAseq 034-035 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +Sst Rbp4,Sst Rbp4,DNAm 13,CS202002276_13,,"RNAseq 036-037, 046-047 in CCN202002013",Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +Sst Pcdh11x,Sst Pcdh11x,DNAm 14,CS202002276_14,,RNAseq 038-040 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +Sst 9630002D21Rik,Sst 9630002D21Rik,DNAm 15,CS202002276_15,,RNAseq 042-045 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +Pvalb Tac1,Pvalb Tac1,DNAm 16,CS202002276_16,,RNAseq 048-053 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +Pvalb Gpr149,Pvalb Gpr149,DNAm 17,CS202002276_17,,RNAseq 050 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +Pvalb Plxnc1,Pvalb Plxnc1,DNAm 18,CS202002276_18,,RNAseq 054-055 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +Pvalb Vipr2,Pvalb Vipr2,DNAm 19,CS202002276_19,Chandelier,RNAseq 056-057 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +L2/3 IT Greb1l,L2/3 IT Greb1l,DNAm 20,CS202002276_20,L2/3 IT,RNAseq 058-060 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +L5 IT Rspo1_1,L5 IT Rspo1_1,DNAm 21,CS202002276_21,,RNAseq 061 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +L5 IT Rspo1_2,L5 IT Rspo1_2,DNAm 22,CS202002276_22,,RNAseq 062 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +L5 IT S100b,L5 IT S100b,DNAm 23,CS202002276_23,,RNAseq 063-064 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +L5/6 IT Arhgap15,L5/6 IT Arhgap15,DNAm 24,CS202002276_24,,"RNAseq 065, 067 in CCN202002013",Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +L5 IT Pld5_2,L5 IT Pld5_2,DNAm 25,CS202002276_25,,RNAseq 066 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +L6 IT_2,L6 IT_2,DNAm 26,CS202002276_26,,RNAseq 068 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +L6 IT Car3,L6 IT Car3,DNAm 27,CS202002276_27,L6 IT Car3,RNAseq 069 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +L5 ET,L5 ET,DNAm 28,CS202002276_28,L5 ET,RNAseq 070-073 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +L5/6 NP CT Cdh18,L5/6 NP CT Cdh18,DNAm 29,CS202002276_29,,"RNAseq 074, 079-080 in CCN202002013",Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +L6 CT Gpr139,L6 CT Gpr139,DNAm 30,CS202002276_30,,RNAseq 075 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +L6 CT Cpa6,L6 CT Cpa6,DNAm 31,CS202002276_31,,RNAseq 076 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +L6 CT Grp,L6 CT Grp,DNAm 32,CS202002276_32,,RNAseq 077 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +L6 CT Pou3f2,L6 CT Pou3f2,DNAm 33,CS202002276_33,,RNAseq 078 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +L6b Ctgf,L6b Ctgf,DNAm 34,CS202002276_34,L6b,RNAseq 081-085 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +L5/6 NP Lypd1,L5/6 NP Lypd1,DNAm 35,CS202002276_35,L5/6 NP,RNAseq 086-088 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +OPC Pdgfra,OPC Pdgfra,DNAm 36,CS202002276_36,OPC,RNAseq 091 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +Astro Rorb Prex2,Astro Rorb Prex2,DNAm 37,CS202002276_37,Astrocyte,RNAseq 92-94 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +Oligo Plp1,Oligo Plp1,DNAm 38,CS202002276_38,Oligodendrocyte,"RNAseq 095, 097-102 in CCN202002013",Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +VLMC Lama1,VLMC Lama1,DNAm 39,CS202002276_39,,"RNAseq 104-105, 107 in CCN202002013",Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +VLMC Bnc2,VLMC Bnc2,DNAm 40,CS202002276_40,,"RNAseq 106, 108-110 in CCN202002013",Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +SMC-Peri,SMC-Peri,DNAm 41,CS202002276_41,SMC,RNAseq 111-112 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +Micro-PVM Inpp5d,Micro-PVM Inpp5d,DNAm 42,CS202002276_42,Microglia-PVM,"RNAseq 113, 115-116 in CCN202002013",Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +VLMC,VLMC,DNAm 43,CS202002276_43,VLMC,RNAseq 104-110 in CCN202002013,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,,No +Lamp5,Lamp5,DNAm 01-04,CS202002276_44,Lamp5,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_1|CS202002276_2|CS202002276_3|CS202002276_4,No +Vip,Vip,DNAm 06-08,CS202002276_45,Vip,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_6|CS202002276_7|CS202002276_8,No +Sst,Sst,DNAm 10-15,CS202002276_46,Sst,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_10|CS202002276_11|CS202002276_12|CS202002276_13|CS202002276_14|CS202002276_15,No +Pvalb,Pvalb,DNAm 16-19,CS202002276_47,Pvalb,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_16|CS202002276_17|CS202002276_18|CS202002276_19,No +L4/5 IT,L4/5 IT,DNAm 21-22,CS202002276_48,L4/5 IT,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_21|CS202002276_22,No +L5 IT,L5 IT,"DNAm 23, 25",CS202002276_49,L5 IT,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_23|CS202002276_25,No +L6 IT,L6 IT,"DNAm 24, 26",CS202002276_50,L6 IT,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_24|CS202002276_26,No +L6 CT,L6 CT,DNAm 29-33,CS202002276_51,L6 CT,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_29|CS202002276_30|CS202002276_31|CS202002276_32|CS202002276_33,No +Oligodendrocyte-OPC,Oligodendrocyte-OPC,"DNAm 36, 38",CS202002276_52,Oligodendrocyte-OPC,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_36|CS202002276_38,No +Non-neuronal,Non-neuronal,DNAm 36-38,CS202002276_53,Non-neuronal,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_36|CS202002276_37|CS202002276_38,No +Neuronal: GABAergic,Neuronal: GABAergic,DNAm 01-19,CS202002276_54,Neuronal: GABAergic,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_1|CS202002276_2|CS202002276_3|CS202002276_4|CS202002276_5|CS202002276_6|CS202002276_7|CS202002276_8|CS202002276_9|CS202002276_10|CS202002276_11|CS202002276_12|CS202002276_13|CS202002276_14|CS202002276_15|CS202002276_16|CS202002276_17|CS202002276_18|CS202002276_19,No +Neuronal: Glutamatergic,Neuronal: Glutamatergic,DNAm 20-35,CS202002276_55,Neuronal: Glutamatergic,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_20|CS202002276_21|CS202002276_22|CS202002276_23|CS202002276_24|CS202002276_25|CS202002276_26|CS202002276_27|CS202002276_28|CS202002276_29|CS202002276_30|CS202002276_31|CS202002276_32|CS202002276_33|CS202002276_34|CS202002276_35,No +Non-neural,Non-neural,DNAm 39-43,CS202002276_56,Non-neural,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_39|CS202002276_40|CS202002276_41|CS202002276_42|CS202002276_43,No +CGE/PoA,CGE/PoA,DNAm 01-08,CS202002276_57,CGE/PoA,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_1|CS202002276_2|CS202002276_3|CS202002276_4|CS202002276_5|CS202002276_6|CS202002276_7|CS202002276_8,No +MGE,MGE,DNAm 09-19,CS202002276_58,MGE,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_9|CS202002276_10|CS202002276_11|CS202002276_12|CS202002276_13|CS202002276_14|CS202002276_15|CS202002276_16|CS202002276_17|CS202002276_18|CS202002276_19,No +IT projecting,IT projecting,DNAm 20-27,CS202002276_59,IT projecting,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_20|CS202002276_21|CS202002276_22|CS202002276_23|CS202002276_24|CS202002276_25|CS202002276_26|CS202002276_27,No +Non-IT projecting,Non-IT projecting,DNAm 28-35,CS202002276_60,Non-IT projecting,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_28|CS202002276_29|CS202002276_30|CS202002276_31|CS202002276_32|CS202002276_33|CS202002276_34|CS202002276_35,No +All cells,All cells,DNAm 01-43,CS202002276_61,,,Hanqing Liu,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002276,Mouse,DNAm,CS202002276_1|CS202002276_2|CS202002276_3|CS202002276_4|CS202002276_5|CS202002276_6|CS202002276_7|CS202002276_8|CS202002276_9|CS202002276_10|CS202002276_11|CS202002276_12|CS202002276_13|CS202002276_14|CS202002276_15|CS202002276_16|CS202002276_17|CS202002276_18|CS202002276_19|CS202002276_20|CS202002276_21|CS202002276_22|CS202002276_23|CS202002276_24|CS202002276_25|CS202002276_26|CS202002276_27|CS202002276_28|CS202002276_29|CS202002276_30|CS202002276_31|CS202002276_32|CS202002276_33|CS202002276_34|CS202002276_35|CS202002276_36|CS202002276_37|CS202002276_38|CS202002276_39|CS202002276_40|CS202002276_41|CS202002276_42|CS202002276_43,No \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202002277.csv b/src/dendrograms/nomenclature_table_CCN202002277.csv index fa14fc66..ceea8905 100644 --- a/src/dendrograms/nomenclature_table_CCN202002277.csv +++ b/src/dendrograms/nomenclature_table_CCN202002277.csv @@ -1,47 +1,47 @@ -cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions -Lamp5 Ndnf,Lamp5 Ndnf,ATACseq 01,CS202002277_1,,RNAseq 001-005 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -Lamp5 Arhgdib,Lamp5 Arhgdib,ATACseq 02,CS202002277_2,,RNAseq 006 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -Lamp5 Slc35d3,Lamp5 Slc35d3,ATACseq 03,CS202002277_3,,RNAseq 007 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -Lamp5 Lhx6,Lamp5 Lhx6,ATACseq 04,CS202002277_4,Lamp5 Lhx6,RNAseq 008 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -Sncg,Sncg,ATACseq 05,CS202002277_5,Sncg,RNAseq 009-014 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -Vip Hcls1,Vip Hcls1,ATACseq 06,CS202002277_6,,RNAseq 015-018 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -Vip Lipg,Vip Lipg,ATACseq 07,CS202002277_7,,"RNAseq 019-020, 026-027 in CCN202002013",Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -Vip Gcnt4,Vip Gcnt4,ATACseq 08,CS202002277_8,,RNAseq 021-022 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -Vip Chat,Vip Chat,ATACseq 09,CS202002277_9,,RNAseq 023-025 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -Sst Chodl,Sst Chodl,ATACseq 10,CS202002277_10,Sst Chodl,RNAseq 028 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -Sst Myh8,Sst Myh8,ATACseq 11,CS202002277_11,,RNAseq 029-033 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -Sst Man1a,Sst Man1a,ATACseq 12,CS202002277_12,,"RNAseq 034-035, 038-041 in CCN202002013",Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -Sst Stk33,Sst Stk33,ATACseq 13,CS202002277_13,,"RNAseq 036-037, 042-047 in CCN202002013",Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -Pvalb Ntf3,Pvalb Ntf3,ATACseq 14,CS202002277_14,,RNAseq 048-053 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -Pvalb Tac1,Pvalb Tac1,ATACseq 15,CS202002277_15,,RNAseq 054-055 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -Pvalb Vipr2,Pvalb Vipr2,ATACseq 16,CS202002277_16,Chandelier,RNAseq 056-057 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -L2/3_1,L2/3_1,ATACseq 17,CS202002277_17,L2/3 IT,RNAseq 058-060 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -L4,L4,ATACseq 18,CS202002277_18,L4/5 IT,RNAseq 061 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -L5 IT_1,L5 IT_1,ATACseq 19,CS202002277_19,,RNAseq 062 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -L5 IT_2,L5 IT_2,ATACseq 20,CS202002277_20,,RNAseq 063-065 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -L6 IT,L6 IT,ATACseq 21,CS202002277_21,L6 IT,RNAseq 066-068 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -L5 ET,L5 ET,ATACseq 22,CS202002277_22,L5 ET,RNAseq 070-073 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -L5/6 NP,L5/6 NP,ATACseq 23,CS202002277_23,L5/6 NP,"RNAseq 074, 086-088 in CCN202002013",Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -L6 CT,L6 CT,ATACseq 24,CS202002277_24,L6 CT,RNAseq 075-081 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -OPC,OPC,ATACseq 25,CS202002277_25,OPC,RNAseq 091 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -Astro,Astro,ATACseq 26,CS202002277_26,Astrocyte,RNAseq 092-094 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -Oligo,Oligo,ATACseq 27,CS202002277_27,Oligodendrocyte,RNAseq 095-012 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -Endo,Endo,ATACseq 28,CS202002277_28,Endothelial,RNAseq 103 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -VLMC,VLMC,ATACseq 29,CS202002277_29,VLMC,RNAseq 104-110 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -SMC-Peri,SMC-Peri,ATACseq 30,CS202002277_30,,RNAseq 111-112 in CCN202002013|SMC+Pericyte,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -Micro-PVM,Micro-PVM,ATACseq 31,CS202002277_31,Microglia-PVM,RNAseq 113-116 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq, -Lamp5,Lamp5,ATACseq 01-03,CS202002277_32,Lamp5,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_1|CS202002277_2|CS202002277_3 -Vip,Vip,ATACseq 06-09,CS202002277_33,Vip,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_6|CS202002277_7|CS202002277_8|CS202002277_9 -Sst,Sst,ATACseq 11-13,CS202002277_34,Sst,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_11|CS202002277_12|CS202002277_13 -Pvalb,Pvalb,ATACseq 14-16,CS202002277_35,Pvalb,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_14|CS202002277_15|CS202002277_16 -L5 IT,L5 IT,ATACseq 19-20,CS202002277_36,L5 IT,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_19|CS202002277_20 -Oligodendrocyte-OPC,Oligodendrocyte-OPC,"ATACseq 25, 27",CS202002277_37,Oligodendrocyte-OPC,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_25|CS202002277_27 -Non-neuronal,Non-neuronal,ATACseq 25-27,CS202002277_38,Non-neuronal,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_25|CS202002277_26|CS202002277_27 -Neuronal: GABAergic,Neuronal: GABAergic,ATACseq 01-16,CS202002277_39,Neuronal: GABAergic,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_1|CS202002277_2|CS202002277_3|CS202002277_4|CS202002277_5|CS202002277_6|CS202002277_7|CS202002277_8|CS202002277_9|CS202002277_10|CS202002277_11|CS202002277_12|CS202002277_13|CS202002277_14|CS202002277_15|CS202002277_16 -Neuronal: Glutamatergic,Neuronal: Glutamatergic,ATACseq 17-24,CS202002277_40,Neuronal: Glutamatergic,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_17|CS202002277_18|CS202002277_19|CS202002277_20|CS202002277_21|CS202002277_22|CS202002277_23|CS202002277_24 -Non-neural,Non-neural,ATACseq 28-31,CS202002277_41,Non-neural,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_28|CS202002277_29|CS202002277_30|CS202002277_31 -CGE/PoA,CGE/PoA,ATACseq 01-09,CS202002277_42,CGE/PoA,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_1|CS202002277_2|CS202002277_3|CS202002277_4|CS202002277_5|CS202002277_6|CS202002277_7|CS202002277_8|CS202002277_9 -MGE,MGE,ATACseq 10-16,CS202002277_43,MGE,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_10|CS202002277_11|CS202002277_12|CS202002277_13|CS202002277_14|CS202002277_15|CS202002277_16 -IT projecting,IT projecting,ATACseq 17-21,CS202002277_44,IT projecting,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_17|CS202002277_18|CS202002277_19|CS202002277_20|CS202002277_21 -Non-IT projecting,Non-IT projecting,ATACseq 22-24,CS202002277_45,Non-IT projecting,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_22|CS202002277_23|CS202002277_24 -,All cells,ATACseq 01-31,CS202002277_46,,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_1|CS202002277_2|CS202002277_3|CS202002277_4|CS202002277_5|CS202002277_6|CS202002277_7|CS202002277_8|CS202002277_9|CS202002277_10|CS202002277_11|CS202002277_12|CS202002277_13|CS202002277_14|CS202002277_15|CS202002277_16|CS202002277_17|CS202002277_18|CS202002277_19|CS202002277_20|CS202002277_21|CS202002277_22|CS202002277_23|CS202002277_24|CS202002277_25|CS202002277_26|CS202002277_27|CS202002277_28|CS202002277_29|CS202002277_30|CS202002277_31 \ No newline at end of file +cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions,cell_type_card +Lamp5 Ndnf,Lamp5 Ndnf,ATACseq 01,CS202002277_1,,RNAseq 001-005 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,,No +Lamp5 Arhgdib,Lamp5 Arhgdib,ATACseq 02,CS202002277_2,,RNAseq 006 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,,No +Lamp5 Slc35d3,Lamp5 Slc35d3,ATACseq 03,CS202002277_3,,RNAseq 007 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,,No +Lamp5 Lhx6,Lamp5 Lhx6,ATACseq 04,CS202002277_4,Lamp5 Lhx6,RNAseq 008 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,,No +Sncg,Sncg,ATACseq 05,CS202002277_5,Sncg,RNAseq 009-014 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,,No +Vip Hcls1,Vip Hcls1,ATACseq 06,CS202002277_6,,RNAseq 015-018 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,,No +Vip Lipg,Vip Lipg,ATACseq 07,CS202002277_7,,"RNAseq 019-020, 026-027 in CCN202002013",Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,,No +Vip Gcnt4,Vip Gcnt4,ATACseq 08,CS202002277_8,,RNAseq 021-022 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,,No +Vip Chat,Vip Chat,ATACseq 09,CS202002277_9,,RNAseq 023-025 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,,No +Sst Chodl,Sst Chodl,ATACseq 10,CS202002277_10,Sst Chodl,RNAseq 028 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,,No +Sst Myh8,Sst Myh8,ATACseq 11,CS202002277_11,,RNAseq 029-033 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,,No +Sst Man1a,Sst Man1a,ATACseq 12,CS202002277_12,,"RNAseq 034-035, 038-041 in CCN202002013",Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,,No +Sst Stk33,Sst Stk33,ATACseq 13,CS202002277_13,,"RNAseq 036-037, 042-047 in CCN202002013",Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,,No +Pvalb Ntf3,Pvalb Ntf3,ATACseq 14,CS202002277_14,,RNAseq 048-053 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,,No +Pvalb Tac1,Pvalb Tac1,ATACseq 15,CS202002277_15,,RNAseq 054-055 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,,No +Pvalb Vipr2,Pvalb Vipr2,ATACseq 16,CS202002277_16,Chandelier,RNAseq 056-057 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,,No +L2/3_1,L2/3_1,ATACseq 17,CS202002277_17,L2/3 IT,RNAseq 058-060 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,,No +L4,L4,ATACseq 18,CS202002277_18,L4/5 IT,RNAseq 061 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,,No +L5 IT_1,L5 IT_1,ATACseq 19,CS202002277_19,,RNAseq 062 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,,No +L5 IT_2,L5 IT_2,ATACseq 20,CS202002277_20,,RNAseq 063-065 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,,No +L6 IT,L6 IT,ATACseq 21,CS202002277_21,L6 IT,RNAseq 066-068 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,,No +L5 ET,L5 ET,ATACseq 22,CS202002277_22,L5 ET,RNAseq 070-073 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,,No +L5/6 NP,L5/6 NP,ATACseq 23,CS202002277_23,L5/6 NP,"RNAseq 074, 086-088 in CCN202002013",Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,,No +L6 CT,L6 CT,ATACseq 24,CS202002277_24,L6 CT,RNAseq 075-081 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,,No +OPC,OPC,ATACseq 25,CS202002277_25,OPC,RNAseq 091 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,,No +Astro,Astro,ATACseq 26,CS202002277_26,Astrocyte,RNAseq 092-094 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,,No +Oligo,Oligo,ATACseq 27,CS202002277_27,Oligodendrocyte,RNAseq 095-012 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,,No +Endo,Endo,ATACseq 28,CS202002277_28,Endothelial,RNAseq 103 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,,No +VLMC,VLMC,ATACseq 29,CS202002277_29,VLMC,RNAseq 104-110 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,,No +SMC-Peri,SMC-Peri,ATACseq 30,CS202002277_30,,RNAseq 111-112 in CCN202002013|SMC+Pericyte,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,,No +Micro-PVM,Micro-PVM,ATACseq 31,CS202002277_31,Microglia-PVM,RNAseq 113-116 in CCN202002013,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,,No +Lamp5,Lamp5,ATACseq 01-03,CS202002277_32,Lamp5,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_1|CS202002277_2|CS202002277_3,No +Vip,Vip,ATACseq 06-09,CS202002277_33,Vip,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_6|CS202002277_7|CS202002277_8|CS202002277_9,No +Sst,Sst,ATACseq 11-13,CS202002277_34,Sst,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_11|CS202002277_12|CS202002277_13,No +Pvalb,Pvalb,ATACseq 14-16,CS202002277_35,Pvalb,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_14|CS202002277_15|CS202002277_16,No +L5 IT,L5 IT,ATACseq 19-20,CS202002277_36,L5 IT,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_19|CS202002277_20,No +Oligodendrocyte-OPC,Oligodendrocyte-OPC,"ATACseq 25, 27",CS202002277_37,Oligodendrocyte-OPC,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_25|CS202002277_27,No +Non-neuronal,Non-neuronal,ATACseq 25-27,CS202002277_38,Non-neuronal,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_25|CS202002277_26|CS202002277_27,No +Neuronal: GABAergic,Neuronal: GABAergic,ATACseq 01-16,CS202002277_39,Neuronal: GABAergic,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_1|CS202002277_2|CS202002277_3|CS202002277_4|CS202002277_5|CS202002277_6|CS202002277_7|CS202002277_8|CS202002277_9|CS202002277_10|CS202002277_11|CS202002277_12|CS202002277_13|CS202002277_14|CS202002277_15|CS202002277_16,No +Neuronal: Glutamatergic,Neuronal: Glutamatergic,ATACseq 17-24,CS202002277_40,Neuronal: Glutamatergic,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_17|CS202002277_18|CS202002277_19|CS202002277_20|CS202002277_21|CS202002277_22|CS202002277_23|CS202002277_24,No +Non-neural,Non-neural,ATACseq 28-31,CS202002277_41,Non-neural,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_28|CS202002277_29|CS202002277_30|CS202002277_31,No +CGE/PoA,CGE/PoA,ATACseq 01-09,CS202002277_42,CGE/PoA,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_1|CS202002277_2|CS202002277_3|CS202002277_4|CS202002277_5|CS202002277_6|CS202002277_7|CS202002277_8|CS202002277_9,No +MGE,MGE,ATACseq 10-16,CS202002277_43,MGE,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_10|CS202002277_11|CS202002277_12|CS202002277_13|CS202002277_14|CS202002277_15|CS202002277_16,No +IT projecting,IT projecting,ATACseq 17-21,CS202002277_44,IT projecting,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_17|CS202002277_18|CS202002277_19|CS202002277_20|CS202002277_21,No +Non-IT projecting,Non-IT projecting,ATACseq 22-24,CS202002277_45,Non-IT projecting,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_22|CS202002277_23|CS202002277_24,No +All cells,All cells,ATACseq 01-31,CS202002277_46,,,Yang Li,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002277,Mouse,ATACseq,CS202002277_1|CS202002277_2|CS202002277_3|CS202002277_4|CS202002277_5|CS202002277_6|CS202002277_7|CS202002277_8|CS202002277_9|CS202002277_10|CS202002277_11|CS202002277_12|CS202002277_13|CS202002277_14|CS202002277_15|CS202002277_16|CS202002277_17|CS202002277_18|CS202002277_19|CS202002277_20|CS202002277_21|CS202002277_22|CS202002277_23|CS202002277_24|CS202002277_25|CS202002277_26|CS202002277_27|CS202002277_28|CS202002277_29|CS202002277_30|CS202002277_31,No \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202103210.csv b/src/dendrograms/nomenclature_table_CCN202103210.csv index cac85887..d25bdb2d 100644 --- a/src/dendrograms/nomenclature_table_CCN202103210.csv +++ b/src/dendrograms/nomenclature_table_CCN202103210.csv @@ -1,127 +1,127 @@ -cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions -Lamp5_6,Lamp5_6,MERFISH 01,CS202103210_1,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Lamp5_5,Lamp5_5,MERFISH 02,CS202103210_2,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Lamp5_3,Lamp5_3,MERFISH 03,CS202103210_3,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Lamp5_2,Lamp5_2,MERFISH 04,CS202103210_4,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Lamp5_4,Lamp5_4,MERFISH 05,CS202103210_5,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Lamp5_1,Lamp5_1,MERFISH 06,CS202103210_6,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Lamp5_7,Lamp5_7,MERFISH 07,CS202103210_7,Lamp5 Lhx6,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Lamp5_8,Lamp5_8,MERFISH 08,CS202103210_8,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Vip_11,Vip_11,MERFISH 09,CS202103210_9,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Sncg_1,Sncg_1,MERFISH 10,CS202103210_10,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Sncg_2,Sncg_2,MERFISH 11,CS202103210_11,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Vip_9,Vip_9,MERFISH 12,CS202103210_12,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Vip_10,Vip_10,MERFISH 13,CS202103210_13,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Vip_4,Vip_4,MERFISH 14,CS202103210_14,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Vip_7,Vip_7,MERFISH 15,CS202103210_15,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Vip_8,Vip_8,MERFISH 16,CS202103210_16,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Vip_2,Vip_2,MERFISH 17,CS202103210_17,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Vip_1,Vip_1,MERFISH 18,CS202103210_18,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Vip_5,Vip_5,MERFISH 19,CS202103210_19,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Vip_6,Vip_6,MERFISH 20,CS202103210_20,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Vip_3,Vip_3,MERFISH 21,CS202103210_21,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Sst_Chodl,Sst_Chodl,MERFISH 22,CS202103210_22,Sst Chodl,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Sst_2,Sst_2,MERFISH 23,CS202103210_23,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Sst_7,Sst_7,MERFISH 24,CS202103210_24,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Sst_8,Sst_8,MERFISH 25,CS202103210_25,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Sst_6,Sst_6,MERFISH 26,CS202103210_26,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Sst_1,Sst_1,MERFISH 27,CS202103210_27,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Sst_3,Sst_3,MERFISH 28,CS202103210_28,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Sst_4,Sst_4,MERFISH 29,CS202103210_29,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Sst_5,Sst_5,MERFISH 30,CS202103210_30,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Pvalb_9,Pvalb_9,MERFISH 31,CS202103210_31,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Pvalb_6,Pvalb_6,MERFISH 32,CS202103210_32,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Pvalb_10,Pvalb_10,MERFISH 33,CS202103210_33,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Pvalb_8,Pvalb_8,MERFISH 34,CS202103210_34,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Pvalb_3,Pvalb_3,MERFISH 35,CS202103210_35,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Pvalb_5,Pvalb_5,MERFISH 36,CS202103210_36,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Pvalb_7,Pvalb_7,MERFISH 37,CS202103210_37,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Pvalb_2,Pvalb_2,MERFISH 38,CS202103210_38,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Pvalb_4,Pvalb_4,MERFISH 39,CS202103210_39,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Pvalb_1,Pvalb_1,MERFISH 40,CS202103210_40,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Pvalb_12,Pvalb_12,MERFISH 41,CS202103210_41,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Pvalb_11,Pvalb_11,MERFISH 42,CS202103210_42,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L23_IT_1,L23_IT_1,MERFISH 43,CS202103210_43,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L23_IT_2,L23_IT_2,MERFISH 44,CS202103210_44,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L23_IT_5,L23_IT_5,MERFISH 45,CS202103210_45,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L23_IT_3,L23_IT_3,MERFISH 46,CS202103210_46,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L23_IT_4,L23_IT_4,MERFISH 47,CS202103210_47,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L45_IT_1,L45_IT_1,MERFISH 48,CS202103210_48,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L45_IT_2,L45_IT_2,MERFISH 49,CS202103210_49,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L45_IT_SSp_1,L45_IT_SSp_1,MERFISH 50,CS202103210_50,,,Meng Zhang,10.1101/2020.06.04.105700,neocortex,UBERON_0001950,CCN202103210,Mouse,MERFISH, -L45_IT_SSp_2,L45_IT_SSp_2,MERFISH 51,CS202103210_51,,,Meng Zhang,10.1101/2020.06.04.105700,neocortex,UBERON_0001950,CCN202103210,Mouse,MERFISH, -L45_IT_5,L45_IT_5,MERFISH 52,CS202103210_52,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L45_IT_4,L45_IT_4,MERFISH 53,CS202103210_53,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L45_IT_3,L45_IT_3,MERFISH 54,CS202103210_54,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L5_IT_1,L5_IT_1,MERFISH 55,CS202103210_55,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L5_IT_2,L5_IT_2,MERFISH 56,CS202103210_56,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L5_IT_3,L5_IT_3,MERFISH 57,CS202103210_57,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L5_IT_4,L5_IT_4,MERFISH 58,CS202103210_58,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L6_IT_1,L6_IT_1,MERFISH 59,CS202103210_59,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L6_IT_2,L6_IT_2,MERFISH 60,CS202103210_60,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L6_IT_3,L6_IT_3,MERFISH 61,CS202103210_61,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L6_IT_Car3,L6_IT_Car3,MERFISH 62,CS202103210_62,L6 IT Car3,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L5_PT_5,L5_PT_5,MERFISH 63,CS202103210_63,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L5_PT_1,L5_PT_1,MERFISH 64,CS202103210_64,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L5_PT_3,L5_PT_3,MERFISH 65,CS202103210_65,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L5_PT_2,L5_PT_2,MERFISH 66,CS202103210_66,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L5_PT_4,L5_PT_4,MERFISH 67,CS202103210_67,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L6_CT_5,L6_CT_5,MERFISH 68,CS202103210_68,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L6_CT_1,L6_CT_1,MERFISH 69,CS202103210_69,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L6_CT_3,L6_CT_3,MERFISH 70,CS202103210_70,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L6_CT_2,L6_CT_2,MERFISH 71,CS202103210_71,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L6_CT_4,L6_CT_4,MERFISH 72,CS202103210_72,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L6_CT_9,L6_CT_9,MERFISH 73,CS202103210_73,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L6_CT_6,L6_CT_6,MERFISH 74,CS202103210_74,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L6_CT_7,L6_CT_7,MERFISH 75,CS202103210_75,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L6_CT_8,L6_CT_8,MERFISH 76,CS202103210_76,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L6b_3,L6b_3,MERFISH 77,CS202103210_77,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L6b_1,L6b_1,MERFISH 78,CS202103210_78,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L6b_2,L6b_2,MERFISH 79,CS202103210_79,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L56_NP_1,L56_NP_1,MERFISH 80,CS202103210_80,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -L56_NP_2,L56_NP_2,MERFISH 81,CS202103210_81,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Astro_3,Astro_3,MERFISH 82,CS202103210_82,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Astro_2,Astro_2,MERFISH 83,CS202103210_83,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Astro_1,Astro_1,MERFISH 84,CS202103210_84,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -OPC,OPC,MERFISH 85,CS202103210_85,OPC,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Oligo_3,Oligo_3,MERFISH 86,CS202103210_86,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Oligo_2,Oligo_2,MERFISH 87,CS202103210_87,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Oligo_1,Oligo_1,MERFISH 88,CS202103210_88,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Endo,Endo,MERFISH 89,CS202103210_89,Endothelial,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -VLMC,VLMC,MERFISH 90,CS202103210_90,VLMC,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -SMC,SMC,MERFISH 91,CS202103210_91,SMC,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Peri,Peri,MERFISH 92,CS202103210_92,Pericyte,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Micro_1,Micro_1,MERFISH 93,CS202103210_93,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Micro_2,Micro_2,MERFISH 94,CS202103210_94,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -PVM,PVM,MERFISH 95,CS202103210_95,PVM,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH, -Lamp5,Lamp5,MERFISH 01-08,CS202103210_96,Lamp5,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_1|CS202103210_2|CS202103210_3|CS202103210_4|CS202103210_5|CS202103210_6|CS202103210_7|CS202103210_8 -Sncg,Sncg,MERFISH 10-11,CS202103210_97,Sncg,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_10|CS202103210_11 -Vip,Vip,"MERFISH 09, 12-21",CS202103210_98,Vip,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_9|CS202103210_12|CS202103210_13|CS202103210_14|CS202103210_15|CS202103210_16|CS202103210_17|CS202103210_18|CS202103210_19|CS202103210_20|CS202103210_21 -Sst,Sst,MERFISH 22-30,CS202103210_99,Sst,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_22|CS202103210_23|CS202103210_24|CS202103210_25|CS202103210_26|CS202103210_27|CS202103210_28|CS202103210_29|CS202103210_30 -Pvalb,Pvalb,MERFISH 31-42,CS202103210_100,Pvalb,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_31|CS202103210_32|CS202103210_33|CS202103210_34|CS202103210_35|CS202103210_36|CS202103210_37|CS202103210_38|CS202103210_39|CS202103210_40|CS202103210_41|CS202103210_42 -Chandelier,Chandelier,MERFISH 41-42,CS202103210_101,Chandelier,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_41|CS202103210_42 -L2/3 IT,L2/3 IT,MERFISH 43-47,CS202103210_102,L2/3 IT,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_43|CS202103210_44|CS202103210_45|CS202103210_46|CS202103210_47 -L4/5 IT (MOp),L4/5 IT (MOp),"MERFISH 48-49, 52-54",CS202103210_103,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_48|CS202103210_49|CS202103210_52|CS202103210_53|CS202103210_54 -L4/5 IT (SSp),L4/5 IT (SSp),MERFISH 50-51,CS202103210_104,,,Meng Zhang,10.1101/2020.06.04.105700,neocortex,UBERON_0001950,CCN202103210,Mouse,MERFISH,CS202103210_50|CS202103210_51 -L5 IT,L5 IT,MERFISH 55-58,CS202103210_105,L5 IT,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_55|CS202103210_56|CS202103210_57|CS202103210_58 -L6 IT,L6 IT,MERFISH 59-61,CS202103210_106,L6 IT,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_59|CS202103210_60|CS202103210_61 -L5 PT,L5 PT,MERFISH 63-67,CS202103210_107,L5 ET,L5 PT|L5 CF,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_63|CS202103210_64|CS202103210_65|CS202103210_66|CS202103210_67 -L5 PT (Non-MY-projecting),L5 PT (Non-MY-projecting),MERFISH 64-67,CS202103210_108,,L5 ET (Non-MY-projecting),Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_64|CS202103210_65|CS202103210_66|CS202103210_67 -L6 CT,L6 CT,MERFISH 68-76,CS202103210_109,L6 CT,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_68|CS202103210_69|CS202103210_70|CS202103210_71|CS202103210_72|CS202103210_73|CS202103210_74|CS202103210_75|CS202103210_76 -L6b,L6b,MERFISH 77-79,CS202103210_110,L6b,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_77|CS202103210_78|CS202103210_79 -L5/6 NP,L5/6 NP,MERFISH 80-81,CS202103210_111,L5/6 NP,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_80|CS202103210_81 -Astrocyte,Astrocyte,MERFISH 82-84,CS202103210_112,Astrocyte,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_82|CS202103210_83|CS202103210_84 -Oligodendrocyte,Oligodendrocyte,MERFISH 86-88,CS202103210_113,Oligodendrocyte,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_86|CS202103210_87|CS202103210_88 -Microglia,Microglia,MERFISH 93-94,CS202103210_114,Microglia,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_93|CS202103210_94 -Microglia-PVM,Microglia-PVM,MERFISH 93-95,CS202103210_115,Microglia-PVM,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_93|CS202103210_94|CS202103210_95 -CGE/PoA,CGE/PoA,MERFISH 01-21,CS202103210_116,CGE/PoA,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_1|CS202103210_2|CS202103210_3|CS202103210_4|CS202103210_5|CS202103210_6|CS202103210_7|CS202103210_8|CS202103210_9|CS202103210_10|CS202103210_11|CS202103210_12|CS202103210_13|CS202103210_14|CS202103210_15|CS202103210_16|CS202103210_17|CS202103210_18|CS202103210_19|CS202103210_20|CS202103210_21 -MGE,MGE,MERFISH 22-42,CS202103210_117,MGE,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_22|CS202103210_23|CS202103210_24|CS202103210_25|CS202103210_26|CS202103210_27|CS202103210_28|CS202103210_29|CS202103210_30|CS202103210_31|CS202103210_32|CS202103210_33|CS202103210_34|CS202103210_35|CS202103210_36|CS202103210_37|CS202103210_38|CS202103210_39|CS202103210_40|CS202103210_41|CS202103210_42 -GABAergic,GABAergic,MERFISH 01-42,CS202103210_118,Neuronal: GABAergic,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_1|CS202103210_2|CS202103210_3|CS202103210_4|CS202103210_5|CS202103210_6|CS202103210_7|CS202103210_8|CS202103210_9|CS202103210_10|CS202103210_11|CS202103210_12|CS202103210_13|CS202103210_14|CS202103210_15|CS202103210_16|CS202103210_17|CS202103210_18|CS202103210_19|CS202103210_20|CS202103210_21|CS202103210_22|CS202103210_23|CS202103210_24|CS202103210_25|CS202103210_26|CS202103210_27|CS202103210_28|CS202103210_29|CS202103210_30|CS202103210_31|CS202103210_32|CS202103210_33|CS202103210_34|CS202103210_35|CS202103210_36|CS202103210_37|CS202103210_38|CS202103210_39|CS202103210_40|CS202103210_41|CS202103210_42 -IT projecting,IT projecting,MERFISH 43-61,CS202103210_119,IT projecting,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_43|CS202103210_44|CS202103210_45|CS202103210_46|CS202103210_47|CS202103210_48|CS202103210_49|CS202103210_50|CS202103210_51|CS202103210_52|CS202103210_53|CS202103210_54|CS202103210_55|CS202103210_56|CS202103210_57|CS202103210_58|CS202103210_59|CS202103210_60|CS202103210_61 -Non-IT projecting,Non-IT projecting,MERFISH 62-81,CS202103210_120,Non-IT projecting,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_62|CS202103210_63|CS202103210_64|CS202103210_65|CS202103210_66|CS202103210_67|CS202103210_68|CS202103210_69|CS202103210_70|CS202103210_71|CS202103210_72|CS202103210_73|CS202103210_74|CS202103210_75|CS202103210_76|CS202103210_77|CS202103210_78|CS202103210_79|CS202103210_80|CS202103210_81 -Glutamatergic,Glutamatergic,MERFISH 43-81,CS202103210_121,Neuronal: Glutamatergic,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_43|CS202103210_44|CS202103210_45|CS202103210_46|CS202103210_47|CS202103210_48|CS202103210_49|CS202103210_50|CS202103210_51|CS202103210_52|CS202103210_53|CS202103210_54|CS202103210_55|CS202103210_56|CS202103210_57|CS202103210_58|CS202103210_59|CS202103210_60|CS202103210_61|CS202103210_62|CS202103210_63|CS202103210_64|CS202103210_65|CS202103210_66|CS202103210_67|CS202103210_68|CS202103210_69|CS202103210_70|CS202103210_71|CS202103210_72|CS202103210_73|CS202103210_74|CS202103210_75|CS202103210_76|CS202103210_77|CS202103210_78|CS202103210_79|CS202103210_80|CS202103210_81 -Non-Neuronal,Non-Neuronal,MERFISH 82-88,CS202103210_122,Non-neuronal,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_82|CS202103210_83|CS202103210_84|CS202103210_85|CS202103210_86|CS202103210_87|CS202103210_88 -Non-Neural,Non-Neural,MERFISH 89-95,CS202103210_123,Non-neural,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_89|CS202103210_90|CS202103210_91|CS202103210_92|CS202103210_93|CS202103210_94|CS202103210_95 -Oligodendrocyte-OPC,Oligodendrocyte-OPC,MERFISH 86-88,CS202103210_124,Oligodendrocyte-OPC,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_86|CS202103210_87|CS202103210_88 -L4/5 IT,L4/5 IT,"MERFISH 48-49, 52-54",CS202103210_125,L4/5 IT,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_48|CS202103210_49|CS202103210_52|CS202103210_53|CS202103210_54 -,All cells,MERFISH 01-95,CS202103210_126,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_1|CS202103210_2|CS202103210_3|CS202103210_4|CS202103210_5|CS202103210_6|CS202103210_7|CS202103210_8|CS202103210_9|CS202103210_10|CS202103210_11|CS202103210_12|CS202103210_13|CS202103210_14|CS202103210_15|CS202103210_16|CS202103210_17|CS202103210_18|CS202103210_19|CS202103210_20|CS202103210_21|CS202103210_22|CS202103210_23|CS202103210_24|CS202103210_25|CS202103210_26|CS202103210_27|CS202103210_28|CS202103210_29|CS202103210_30|CS202103210_31|CS202103210_32|CS202103210_33|CS202103210_34|CS202103210_35|CS202103210_36|CS202103210_37|CS202103210_38|CS202103210_39|CS202103210_40|CS202103210_41|CS202103210_42|CS202103210_43|CS202103210_44|CS202103210_45|CS202103210_46|CS202103210_47|CS202103210_48|CS202103210_49|CS202103210_50|CS202103210_51|CS202103210_52|CS202103210_53|CS202103210_54|CS202103210_55|CS202103210_56|CS202103210_57|CS202103210_58|CS202103210_59|CS202103210_60|CS202103210_61|CS202103210_62|CS202103210_63|CS202103210_64|CS202103210_65|CS202103210_66|CS202103210_67|CS202103210_68|CS202103210_69|CS202103210_70|CS202103210_71|CS202103210_72|CS202103210_73|CS202103210_74|CS202103210_75|CS202103210_76|CS202103210_77|CS202103210_78|CS202103210_79|CS202103210_80|CS202103210_81|CS202103210_82|CS202103210_83|CS202103210_84|CS202103210_85|CS202103210_86|CS202103210_87|CS202103210_88|CS202103210_89|CS202103210_90|CS202103210_91|CS202103210_92|CS202103210_93|CS202103210_94|CS202103210_95 \ No newline at end of file +cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions,cell_type_card +Lamp5_6,Lamp5_6,MERFISH 01,CS202103210_1,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Lamp5_5,Lamp5_5,MERFISH 02,CS202103210_2,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Lamp5_3,Lamp5_3,MERFISH 03,CS202103210_3,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Lamp5_2,Lamp5_2,MERFISH 04,CS202103210_4,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Lamp5_4,Lamp5_4,MERFISH 05,CS202103210_5,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Lamp5_1,Lamp5_1,MERFISH 06,CS202103210_6,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Lamp5_7,Lamp5_7,MERFISH 07,CS202103210_7,Lamp5 Lhx6,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Lamp5_8,Lamp5_8,MERFISH 08,CS202103210_8,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Vip_11,Vip_11,MERFISH 09,CS202103210_9,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Sncg_1,Sncg_1,MERFISH 10,CS202103210_10,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Sncg_2,Sncg_2,MERFISH 11,CS202103210_11,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Vip_9,Vip_9,MERFISH 12,CS202103210_12,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Vip_10,Vip_10,MERFISH 13,CS202103210_13,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Vip_4,Vip_4,MERFISH 14,CS202103210_14,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Vip_7,Vip_7,MERFISH 15,CS202103210_15,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Vip_8,Vip_8,MERFISH 16,CS202103210_16,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Vip_2,Vip_2,MERFISH 17,CS202103210_17,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Vip_1,Vip_1,MERFISH 18,CS202103210_18,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Vip_5,Vip_5,MERFISH 19,CS202103210_19,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Vip_6,Vip_6,MERFISH 20,CS202103210_20,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Vip_3,Vip_3,MERFISH 21,CS202103210_21,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Sst_Chodl,Sst_Chodl,MERFISH 22,CS202103210_22,Sst Chodl,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Sst_2,Sst_2,MERFISH 23,CS202103210_23,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Sst_7,Sst_7,MERFISH 24,CS202103210_24,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Sst_8,Sst_8,MERFISH 25,CS202103210_25,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Sst_6,Sst_6,MERFISH 26,CS202103210_26,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Sst_1,Sst_1,MERFISH 27,CS202103210_27,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Sst_3,Sst_3,MERFISH 28,CS202103210_28,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Sst_4,Sst_4,MERFISH 29,CS202103210_29,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Sst_5,Sst_5,MERFISH 30,CS202103210_30,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Pvalb_9,Pvalb_9,MERFISH 31,CS202103210_31,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Pvalb_6,Pvalb_6,MERFISH 32,CS202103210_32,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Pvalb_10,Pvalb_10,MERFISH 33,CS202103210_33,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Pvalb_8,Pvalb_8,MERFISH 34,CS202103210_34,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Pvalb_3,Pvalb_3,MERFISH 35,CS202103210_35,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Pvalb_5,Pvalb_5,MERFISH 36,CS202103210_36,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Pvalb_7,Pvalb_7,MERFISH 37,CS202103210_37,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Pvalb_2,Pvalb_2,MERFISH 38,CS202103210_38,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Pvalb_4,Pvalb_4,MERFISH 39,CS202103210_39,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Pvalb_1,Pvalb_1,MERFISH 40,CS202103210_40,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Pvalb_12,Pvalb_12,MERFISH 41,CS202103210_41,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Pvalb_11,Pvalb_11,MERFISH 42,CS202103210_42,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L23_IT_1,L23_IT_1,MERFISH 43,CS202103210_43,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L23_IT_2,L23_IT_2,MERFISH 44,CS202103210_44,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L23_IT_5,L23_IT_5,MERFISH 45,CS202103210_45,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L23_IT_3,L23_IT_3,MERFISH 46,CS202103210_46,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L23_IT_4,L23_IT_4,MERFISH 47,CS202103210_47,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L45_IT_1,L45_IT_1,MERFISH 48,CS202103210_48,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L45_IT_2,L45_IT_2,MERFISH 49,CS202103210_49,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L45_IT_SSp_1,L45_IT_SSp_1,MERFISH 50,CS202103210_50,,,Meng Zhang,10.1101/2020.06.04.105700,neocortex,UBERON_0001950,CCN202103210,Mouse,MERFISH,,No +L45_IT_SSp_2,L45_IT_SSp_2,MERFISH 51,CS202103210_51,,,Meng Zhang,10.1101/2020.06.04.105700,neocortex,UBERON_0001950,CCN202103210,Mouse,MERFISH,,No +L45_IT_5,L45_IT_5,MERFISH 52,CS202103210_52,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L45_IT_4,L45_IT_4,MERFISH 53,CS202103210_53,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L45_IT_3,L45_IT_3,MERFISH 54,CS202103210_54,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L5_IT_1,L5_IT_1,MERFISH 55,CS202103210_55,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L5_IT_2,L5_IT_2,MERFISH 56,CS202103210_56,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L5_IT_3,L5_IT_3,MERFISH 57,CS202103210_57,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L5_IT_4,L5_IT_4,MERFISH 58,CS202103210_58,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L6_IT_1,L6_IT_1,MERFISH 59,CS202103210_59,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L6_IT_2,L6_IT_2,MERFISH 60,CS202103210_60,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L6_IT_3,L6_IT_3,MERFISH 61,CS202103210_61,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L6_IT_Car3,L6_IT_Car3,MERFISH 62,CS202103210_62,L6 IT Car3,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L5_PT_5,L5_PT_5,MERFISH 63,CS202103210_63,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L5_PT_1,L5_PT_1,MERFISH 64,CS202103210_64,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L5_PT_3,L5_PT_3,MERFISH 65,CS202103210_65,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L5_PT_2,L5_PT_2,MERFISH 66,CS202103210_66,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L5_PT_4,L5_PT_4,MERFISH 67,CS202103210_67,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L6_CT_5,L6_CT_5,MERFISH 68,CS202103210_68,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L6_CT_1,L6_CT_1,MERFISH 69,CS202103210_69,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L6_CT_3,L6_CT_3,MERFISH 70,CS202103210_70,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L6_CT_2,L6_CT_2,MERFISH 71,CS202103210_71,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L6_CT_4,L6_CT_4,MERFISH 72,CS202103210_72,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L6_CT_9,L6_CT_9,MERFISH 73,CS202103210_73,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L6_CT_6,L6_CT_6,MERFISH 74,CS202103210_74,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L6_CT_7,L6_CT_7,MERFISH 75,CS202103210_75,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L6_CT_8,L6_CT_8,MERFISH 76,CS202103210_76,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L6b_3,L6b_3,MERFISH 77,CS202103210_77,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L6b_1,L6b_1,MERFISH 78,CS202103210_78,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L6b_2,L6b_2,MERFISH 79,CS202103210_79,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L56_NP_1,L56_NP_1,MERFISH 80,CS202103210_80,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +L56_NP_2,L56_NP_2,MERFISH 81,CS202103210_81,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Astro_3,Astro_3,MERFISH 82,CS202103210_82,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Astro_2,Astro_2,MERFISH 83,CS202103210_83,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Astro_1,Astro_1,MERFISH 84,CS202103210_84,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +OPC,OPC,MERFISH 85,CS202103210_85,OPC,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Oligo_3,Oligo_3,MERFISH 86,CS202103210_86,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Oligo_2,Oligo_2,MERFISH 87,CS202103210_87,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Oligo_1,Oligo_1,MERFISH 88,CS202103210_88,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Endo,Endo,MERFISH 89,CS202103210_89,Endothelial,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +VLMC,VLMC,MERFISH 90,CS202103210_90,VLMC,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +SMC,SMC,MERFISH 91,CS202103210_91,SMC,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Peri,Peri,MERFISH 92,CS202103210_92,Pericyte,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Micro_1,Micro_1,MERFISH 93,CS202103210_93,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Micro_2,Micro_2,MERFISH 94,CS202103210_94,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +PVM,PVM,MERFISH 95,CS202103210_95,PVM,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,,No +Lamp5,Lamp5,MERFISH 01-08,CS202103210_96,Lamp5,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_1|CS202103210_2|CS202103210_3|CS202103210_4|CS202103210_5|CS202103210_6|CS202103210_7|CS202103210_8,No +Sncg,Sncg,MERFISH 10-11,CS202103210_97,Sncg,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_10|CS202103210_11,No +Vip,Vip,"MERFISH 09, 12-21",CS202103210_98,Vip,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_9|CS202103210_12|CS202103210_13|CS202103210_14|CS202103210_15|CS202103210_16|CS202103210_17|CS202103210_18|CS202103210_19|CS202103210_20|CS202103210_21,No +Sst,Sst,MERFISH 23-30,CS202103210_99,Sst,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_23|CS202103210_24|CS202103210_25|CS202103210_26|CS202103210_27|CS202103210_28|CS202103210_29|CS202103210_30,No +Pvalb,Pvalb,MERFISH 31-42,CS202103210_100,Pvalb,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_31|CS202103210_32|CS202103210_33|CS202103210_34|CS202103210_35|CS202103210_36|CS202103210_37|CS202103210_38|CS202103210_39|CS202103210_40|CS202103210_41|CS202103210_42,No +Chandelier,Chandelier,MERFISH 41-42,CS202103210_101,Chandelier,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_41|CS202103210_42,No +L2/3 IT,L2/3 IT,MERFISH 43-47,CS202103210_102,L2/3 IT,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_43|CS202103210_44|CS202103210_45|CS202103210_46|CS202103210_47,No +L4/5 IT (MOp),L4/5 IT (MOp),"MERFISH 48-49, 52-54",CS202103210_103,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_48|CS202103210_49|CS202103210_52|CS202103210_53|CS202103210_54,No +L4/5 IT (SSp),L4/5 IT (SSp),MERFISH 50-51,CS202103210_104,,,Meng Zhang,10.1101/2020.06.04.105700,neocortex,UBERON_0001950,CCN202103210,Mouse,MERFISH,CS202103210_50|CS202103210_51,No +L5 IT,L5 IT,MERFISH 55-58,CS202103210_105,L5 IT,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_55|CS202103210_56|CS202103210_57|CS202103210_58,No +L6 IT,L6 IT,MERFISH 59-61,CS202103210_106,L6 IT,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_59|CS202103210_60|CS202103210_61,No +L5 PT,L5 PT,MERFISH 63-67,CS202103210_107,L5 ET,L5 PT|L5 CF,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_63|CS202103210_64|CS202103210_65|CS202103210_66|CS202103210_67,No +L5 PT (Non-MY-projecting),L5 PT (Non-MY-projecting),MERFISH 64-67,CS202103210_108,,L5 ET (Non-MY-projecting),Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_64|CS202103210_65|CS202103210_66|CS202103210_67,No +L6 CT,L6 CT,MERFISH 68-76,CS202103210_109,L6 CT,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_68|CS202103210_69|CS202103210_70|CS202103210_71|CS202103210_72|CS202103210_73|CS202103210_74|CS202103210_75|CS202103210_76,No +L6b,L6b,MERFISH 77-79,CS202103210_110,L6b,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_77|CS202103210_78|CS202103210_79,No +L5/6 NP,L5/6 NP,MERFISH 80-81,CS202103210_111,L5/6 NP,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_80|CS202103210_81,No +Astrocyte,Astrocyte,MERFISH 82-84,CS202103210_112,Astrocyte,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_82|CS202103210_83|CS202103210_84,No +Oligodendrocyte,Oligodendrocyte,MERFISH 86-88,CS202103210_113,Oligodendrocyte,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_86|CS202103210_87|CS202103210_88,No +Microglia,Microglia,MERFISH 93-94,CS202103210_114,Microglia,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_93|CS202103210_94,No +Microglia-PVM,Microglia-PVM,MERFISH 93-95,CS202103210_115,Microglia-PVM,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_93|CS202103210_94|CS202103210_95,No +CGE/PoA,CGE/PoA,MERFISH 01-21,CS202103210_116,CGE/PoA,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_1|CS202103210_2|CS202103210_3|CS202103210_4|CS202103210_5|CS202103210_6|CS202103210_7|CS202103210_8|CS202103210_9|CS202103210_10|CS202103210_11|CS202103210_12|CS202103210_13|CS202103210_14|CS202103210_15|CS202103210_16|CS202103210_17|CS202103210_18|CS202103210_19|CS202103210_20|CS202103210_21,No +MGE,MGE,MERFISH 22-42,CS202103210_117,MGE,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_22|CS202103210_23|CS202103210_24|CS202103210_25|CS202103210_26|CS202103210_27|CS202103210_28|CS202103210_29|CS202103210_30|CS202103210_31|CS202103210_32|CS202103210_33|CS202103210_34|CS202103210_35|CS202103210_36|CS202103210_37|CS202103210_38|CS202103210_39|CS202103210_40|CS202103210_41|CS202103210_42,No +GABAergic,GABAergic,MERFISH 01-42,CS202103210_118,Neuronal: GABAergic,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_1|CS202103210_2|CS202103210_3|CS202103210_4|CS202103210_5|CS202103210_6|CS202103210_7|CS202103210_8|CS202103210_9|CS202103210_10|CS202103210_11|CS202103210_12|CS202103210_13|CS202103210_14|CS202103210_15|CS202103210_16|CS202103210_17|CS202103210_18|CS202103210_19|CS202103210_20|CS202103210_21|CS202103210_22|CS202103210_23|CS202103210_24|CS202103210_25|CS202103210_26|CS202103210_27|CS202103210_28|CS202103210_29|CS202103210_30|CS202103210_31|CS202103210_32|CS202103210_33|CS202103210_34|CS202103210_35|CS202103210_36|CS202103210_37|CS202103210_38|CS202103210_39|CS202103210_40|CS202103210_41|CS202103210_42,No +IT projecting,IT projecting,MERFISH 43-61,CS202103210_119,IT projecting,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_43|CS202103210_44|CS202103210_45|CS202103210_46|CS202103210_47|CS202103210_48|CS202103210_49|CS202103210_50|CS202103210_51|CS202103210_52|CS202103210_53|CS202103210_54|CS202103210_55|CS202103210_56|CS202103210_57|CS202103210_58|CS202103210_59|CS202103210_60|CS202103210_61,No +Non-IT projecting,Non-IT projecting,MERFISH 62-81,CS202103210_120,Non-IT projecting,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_62|CS202103210_63|CS202103210_64|CS202103210_65|CS202103210_66|CS202103210_67|CS202103210_68|CS202103210_69|CS202103210_70|CS202103210_71|CS202103210_72|CS202103210_73|CS202103210_74|CS202103210_75|CS202103210_76|CS202103210_77|CS202103210_78|CS202103210_79|CS202103210_80|CS202103210_81,No +Glutamatergic,Glutamatergic,MERFISH 43-81,CS202103210_121,Neuronal: Glutamatergic,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_43|CS202103210_44|CS202103210_45|CS202103210_46|CS202103210_47|CS202103210_48|CS202103210_49|CS202103210_50|CS202103210_51|CS202103210_52|CS202103210_53|CS202103210_54|CS202103210_55|CS202103210_56|CS202103210_57|CS202103210_58|CS202103210_59|CS202103210_60|CS202103210_61|CS202103210_62|CS202103210_63|CS202103210_64|CS202103210_65|CS202103210_66|CS202103210_67|CS202103210_68|CS202103210_69|CS202103210_70|CS202103210_71|CS202103210_72|CS202103210_73|CS202103210_74|CS202103210_75|CS202103210_76|CS202103210_77|CS202103210_78|CS202103210_79|CS202103210_80|CS202103210_81,No +Non-Neuronal,Non-Neuronal,MERFISH 82-88,CS202103210_122,Non-neuronal,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_82|CS202103210_83|CS202103210_84|CS202103210_85|CS202103210_86|CS202103210_87|CS202103210_88,No +Non-Neural,Non-Neural,MERFISH 89-95,CS202103210_123,Non-neural,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_89|CS202103210_90|CS202103210_91|CS202103210_92|CS202103210_93|CS202103210_94|CS202103210_95,No +Oligodendrocyte-OPC,Oligodendrocyte-OPC,MERFISH 86-88,CS202103210_124,Oligodendrocyte-OPC,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_86|CS202103210_87|CS202103210_88,No +L4/5 IT,L4/5 IT,"MERFISH 48-49, 52-54",CS202103210_125,L4/5 IT,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_48|CS202103210_49|CS202103210_52|CS202103210_53|CS202103210_54,No +All cells,All cells,MERFISH 01-95,CS202103210_126,,,Meng Zhang,10.1101/2020.06.04.105700,primary motor cortex,UBERON:0001384,CCN202103210,Mouse,MERFISH,CS202103210_1|CS202103210_2|CS202103210_3|CS202103210_4|CS202103210_5|CS202103210_6|CS202103210_7|CS202103210_8|CS202103210_9|CS202103210_10|CS202103210_11|CS202103210_12|CS202103210_13|CS202103210_14|CS202103210_15|CS202103210_16|CS202103210_17|CS202103210_18|CS202103210_19|CS202103210_20|CS202103210_21|CS202103210_22|CS202103210_23|CS202103210_24|CS202103210_25|CS202103210_26|CS202103210_27|CS202103210_28|CS202103210_29|CS202103210_30|CS202103210_31|CS202103210_32|CS202103210_33|CS202103210_34|CS202103210_35|CS202103210_36|CS202103210_37|CS202103210_38|CS202103210_39|CS202103210_40|CS202103210_41|CS202103210_42|CS202103210_43|CS202103210_44|CS202103210_45|CS202103210_46|CS202103210_47|CS202103210_48|CS202103210_49|CS202103210_50|CS202103210_51|CS202103210_52|CS202103210_53|CS202103210_54|CS202103210_55|CS202103210_56|CS202103210_57|CS202103210_58|CS202103210_59|CS202103210_60|CS202103210_61|CS202103210_62|CS202103210_63|CS202103210_64|CS202103210_65|CS202103210_66|CS202103210_67|CS202103210_68|CS202103210_69|CS202103210_70|CS202103210_71|CS202103210_72|CS202103210_73|CS202103210_74|CS202103210_75|CS202103210_76|CS202103210_77|CS202103210_78|CS202103210_79|CS202103210_80|CS202103210_81|CS202103210_82|CS202103210_83|CS202103210_84|CS202103210_85|CS202103210_86|CS202103210_87|CS202103210_88|CS202103210_89|CS202103210_90|CS202103210_91|CS202103210_92|CS202103210_93|CS202103210_94|CS202103210_95,No \ No newline at end of file diff --git a/src/dendrograms/nomenclature_table_CCN202103220.csv b/src/dendrograms/nomenclature_table_CCN202103220.csv index 11f827d6..13b3ff01 100644 --- a/src/dendrograms/nomenclature_table_CCN202103220.csv +++ b/src/dendrograms/nomenclature_table_CCN202103220.csv @@ -1,23 +1,23 @@ -cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions -L2/3 IT,L2/3 IT,EpiRetroSeq 01,CS202103220_01,L2/3 IT,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, -L4,L4,EpiRetroSeq 02,CS202103220_02,L4/5 IT,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, -L5 IT,L5 IT,EpiRetroSeq 03,CS202103220_03,L5 IT,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, -L6 IT,L6 IT,EpiRetroSeq 04,CS202103220_04,L6 IT,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, -L5 ET,L5 ET,EpiRetroSeq 05,CS202103220_05,L5 ET,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, -L6 CT,L6 CT,EpiRetroSeq 06,CS202103220_06,L6 CT,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, -L6b,L6b,EpiRetroSeq 07,CS202103220_07,L6b,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, -NP,NP,EpiRetroSeq 08,CS202103220_08,L5/6 NP,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, -CLA,CLA,EpiRetroSeq 09,CS202103220_09,,Claustrum,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, -Inhibitory,Inhibitory,EpiRetroSeq 10,CS202103220_10,Neuronal: GABAergic,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, -Others,Others,EpiRetroSeq 11,CS202103220_11,,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, -L5 ET (Cluster 0),L5 ET (Cluster 0),EpiRetroSeq 12,CS202103220_12,,RNAseq 070 in CCN202002013|L5 ET (MY-projecting),Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, -L5 ET (Cluster 2),L5 ET (Cluster 2),EpiRetroSeq 13,CS202103220_13,,RNAseq 070 in CCN202002013,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, -L5 ET (Cluster 3),L5 ET (Cluster 3),EpiRetroSeq 14,CS202103220_14,,RNAseq 070 in CCN202002013,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, -L5 ET (Cluster 5),L5 ET (Cluster 5),EpiRetroSeq 15,CS202103220_15,,RNAseq 071 in CCN202002013,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, -L5 ET (Cluster 4),L5 ET (Cluster 4),EpiRetroSeq 16,CS202103220_16,,RNAseq 070-072 in CCN202002013,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, -L5 ET (Cluster 1),L5 ET (Cluster 1),EpiRetroSeq 17,CS202103220_17,,RNAseq 072-073 in CCN202002013,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq, -IT projecting,IT projecting,"EpiRetroSeq 01-04, 09",CS202103220_18,IT projecting,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq,CS202103220_01|CS202103220_02|CS202103220_03|CS202103220_04|CS202103220_09 -Non-IT projecting,Non-IT projecting,"EpiRetroSeq 05-08, 12-17",CS202103220_19,Non-IT projecting,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq,CS202103220_05|CS202103220_06|CS202103220_07|CS202103220_08|CS202103220_12|CS202103220_13|CS202103220_14|CS202103220_15|CS202103220_16|CS202103220_17 -Glutamatergic,Glutamatergic,"EpiRetroSeq 01-09, 12-17",CS202103220_20,Neuronal: Glutamatergic,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq,CS202103220_01|CS202103220_02|CS202103220_03|CS202103220_04|CS202103220_05|CS202103220_06|CS202103220_07|CS202103220_08|CS202103220_09|CS202103220_12|CS202103220_13|CS202103220_14|CS202103220_15|CS202103220_16|CS202103220_17 -L5 ET (Non-MY-projecting),L5 ET (Non-MY-projecting),EpiRetroSeq 13-17,CS202103220_21,,L5 ET (Non-MY-projecting),Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq,CS202103220_13|CS202103220_14|CS202103220_15|CS202103220_16|CS202103220_17 -,All cells,EpiRetroSeq 01-17,CS202103220_22,,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq,CS202103220_01|CS202103220_02|CS202103220_03|CS202103220_04|CS202103220_05|CS202103220_06|CS202103220_07|CS202103220_08|CS202103220_09|CS202103220_10|CS202103220_11|CS202103220_12|CS202103220_13|CS202103220_14|CS202103220_15|CS202103220_16|CS202103220_17 \ No newline at end of file +cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions,cell_type_card +L2/3 IT,L2/3 IT,EpiRetroSeq 01,CS202103220_01,L2/3 IT,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq,,No +L4,L4,EpiRetroSeq 02,CS202103220_02,L4/5 IT,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq,,No +L5 IT,L5 IT,EpiRetroSeq 03,CS202103220_03,L5 IT,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq,,No +L6 IT,L6 IT,EpiRetroSeq 04,CS202103220_04,L6 IT,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq,,No +L5 ET,L5 ET,EpiRetroSeq 05,CS202103220_05,L5 ET,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq,,No +L6 CT,L6 CT,EpiRetroSeq 06,CS202103220_06,L6 CT,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq,,No +L6b,L6b,EpiRetroSeq 07,CS202103220_07,L6b,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq,,No +NP,NP,EpiRetroSeq 08,CS202103220_08,L5/6 NP,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq,,No +CLA,CLA,EpiRetroSeq 09,CS202103220_09,,Claustrum,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq,,No +Inhibitory,Inhibitory,EpiRetroSeq 10,CS202103220_10,Neuronal: GABAergic,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq,,No +Others,Others,EpiRetroSeq 11,CS202103220_11,,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq,,No +L5 ET (Cluster 0),L5 ET (Cluster 0),EpiRetroSeq 12,CS202103220_12,,RNAseq 070 in CCN202002013|L5 ET (MY-projecting),Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq,,No +L5 ET (Cluster 2),L5 ET (Cluster 2),EpiRetroSeq 13,CS202103220_13,,RNAseq 070 in CCN202002013,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq,,No +L5 ET (Cluster 3),L5 ET (Cluster 3),EpiRetroSeq 14,CS202103220_14,,RNAseq 070 in CCN202002013,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq,,No +L5 ET (Cluster 5),L5 ET (Cluster 5),EpiRetroSeq 15,CS202103220_15,,RNAseq 071 in CCN202002013,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq,,No +L5 ET (Cluster 4),L5 ET (Cluster 4),EpiRetroSeq 16,CS202103220_16,,RNAseq 070-072 in CCN202002013,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq,,No +L5 ET (Cluster 1),L5 ET (Cluster 1),EpiRetroSeq 17,CS202103220_17,,RNAseq 072-073 in CCN202002013,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq,,No +IT projecting,IT projecting,"EpiRetroSeq 01-04, 09",CS202103220_18,IT projecting,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq,CS202103220_01|CS202103220_02|CS202103220_03|CS202103220_04|CS202103220_09,No +Non-IT projecting,Non-IT projecting,"EpiRetroSeq 05-08, 12-17",CS202103220_19,Non-IT projecting,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq,CS202103220_05|CS202103220_06|CS202103220_07|CS202103220_08|CS202103220_12|CS202103220_13|CS202103220_14|CS202103220_15|CS202103220_16|CS202103220_17,No +Glutamatergic,Glutamatergic,"EpiRetroSeq 01-09, 12-17",CS202103220_20,Neuronal: Glutamatergic,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq,CS202103220_01|CS202103220_02|CS202103220_03|CS202103220_04|CS202103220_05|CS202103220_06|CS202103220_07|CS202103220_08|CS202103220_09|CS202103220_12|CS202103220_13|CS202103220_14|CS202103220_15|CS202103220_16|CS202103220_17,No +L5 ET (Non-MY-projecting),L5 ET (Non-MY-projecting),EpiRetroSeq 13-17,CS202103220_21,,L5 ET (Non-MY-projecting),Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq,CS202103220_13|CS202103220_14|CS202103220_15|CS202103220_16|CS202103220_17,No +All cells,All cells,EpiRetroSeq 01-17,CS202103220_22,,,Zhuzhu Zhang,10.1101/2020.04.01.019612,primary motor cortex,UBERON:0001384,CCN202103220,Mouse,Epi-Retro-Seq,CS202103220_01|CS202103220_02|CS202103220_03|CS202103220_04|CS202103220_05|CS202103220_06|CS202103220_07|CS202103220_08|CS202103220_09|CS202103220_10|CS202103220_11|CS202103220_12|CS202103220_13|CS202103220_14|CS202103220_15|CS202103220_16|CS202103220_17,No \ No newline at end of file From 2db128114fc01282a518f7dfe1a6767ec18d8bdc Mon Sep 17 00:00:00 2001 From: Shawn Tan <76212760+shawntanzk@users.noreply.github.com> Date: Tue, 27 Jul 2021 19:21:50 +0100 Subject: [PATCH 10/17] Marmoset dendrogram --- src/dendrograms/CCN201912132.json | 6266 +++++++++++++++++++++++++++++ 1 file changed, 6266 insertions(+) create mode 100644 src/dendrograms/CCN201912132.json diff --git a/src/dendrograms/CCN201912132.json b/src/dendrograms/CCN201912132.json new file mode 100644 index 00000000..052fa76e --- /dev/null +++ b/src/dendrograms/CCN201912132.json @@ -0,0 +1,6266 @@ +{ + "node_attributes": [ + { + "members": 94, + "midpoint": 84.4716, + "height": 0.8381, + "label": "All cells", + "edgePar.col": "#000000", + "edgePar.lwd": 2, + "edgePar.conf": 1, + "cell_set_preferred_alias": "All cells", + "cell_set_label": "RNAseq 01-94", + "cell_set_accession": "CS201912132_135", + "cell_set_aligned_alias": "", + "cell_set_additional_alias": "", + "cell_set_alias_assignee": "Nikolas Jorstad", + "cell_set_alias_citation": "10.1101/2020.03.31.016972", + "cell_set_structure": "primary motor cortex", + "cell_set_ontology_tag": "UBERON:0001384", + "species": "Marmoset", + "modality": "RNAseq", + "taxonomy_id": "CCN201912132", + "taxonomy_description": "Marmoset M1 taxonomy using 10X data", + "child_cell_set_accessions": "CS201912132_1|CS201912132_2|CS201912132_3|CS201912132_4|CS201912132_5|CS201912132_6|CS201912132_7|CS201912132_8|CS201912132_9|CS201912132_10|CS201912132_11|CS201912132_12|CS201912132_13|CS201912132_14|CS201912132_15|CS201912132_16|CS201912132_17|CS201912132_18|CS201912132_19|CS201912132_20|CS201912132_21|CS201912132_22|CS201912132_23|CS201912132_24|CS201912132_25|CS201912132_26|CS201912132_27|CS201912132_28|CS201912132_29|CS201912132_30|CS201912132_31|CS201912132_32|CS201912132_33|CS201912132_34|CS201912132_35|CS201912132_36|CS201912132_37|CS201912132_38|CS201912132_39|CS201912132_40|CS201912132_41|CS201912132_42|CS201912132_43|CS201912132_44|CS201912132_45|CS201912132_46|CS201912132_47|CS201912132_48|CS201912132_49|CS201912132_50|CS201912132_51|CS201912132_52|CS201912132_53|CS201912132_54|CS201912132_55|CS201912132_56|CS201912132_57|CS201912132_58|CS201912132_59|CS201912132_60|CS201912132_61|CS201912132_62|CS201912132_63|CS201912132_64|CS201912132_65|CS201912132_66|CS201912132_67|CS201912132_68|CS201912132_69|CS201912132_70|CS201912132_71|CS201912132_72|CS201912132_73|CS201912132_74|CS201912132_75|CS201912132_76|CS201912132_77|CS201912132_78|CS201912132_79|CS201912132_80|CS201912132_81|CS201912132_82|CS201912132_83|CS201912132_84|CS201912132_85|CS201912132_86|CS201912132_87|CS201912132_88|CS201912132_89|CS201912132_90|CS201912132_91|CS201912132_92|CS201912132_93|CS201912132_94", 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-228,4 +228,4 @@ CS202002013_224 CS202002013_225 CS202002013_227 CS202002013_228 -CS202002013_231 \ No newline at end of file +CS202002013_231 From 51f9a4669223554ca7b35b52dfaa7edd409ffa38 Mon Sep 17 00:00:00 2001 From: Shawn Tan <76212760+shawntanzk@users.noreply.github.com> Date: Wed, 4 Aug 2021 16:11:11 +0100 Subject: [PATCH 12/17] Update CS202002013_Allen_markers.tsv --- src/markers/CS202002013_Allen_markers.tsv | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/markers/CS202002013_Allen_markers.tsv b/src/markers/CS202002013_Allen_markers.tsv index 7bf7520d..93e32d3f 100644 --- a/src/markers/CS202002013_Allen_markers.tsv +++ b/src/markers/CS202002013_Allen_markers.tsv @@ -107,7 +107,7 @@ CS202002013_30 Sst Myh8_1 ensembl:ENSMUSG00000055775|ensembl:ENSMUSG00000004366 CS202002013_31 Sst Myh8_2 ensembl:ENSMUSG00000055775|ensembl:ENSMUSG00000004366 CS202002013_32 Sst Myh8_3 ensembl:ENSMUSG00000055775|ensembl:ENSMUSG00000004366 CS202002013_29 Sst Penk 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"child_cell_set_accessions": "CS202002013_15|CS202002013_16", + "cell_type_card": "No", "_row": "n24" } ], @@ -1181,10 +1257,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", + "cell_type_card": "Cell Type", "_row": "Vip Serpinf1_1" } ] @@ -1214,10 +1292,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", + "cell_type_card": "Cell Type", 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datasets ", "child_cell_set_accessions": "", + "cell_type_card": "Cell Type", "_row": "Vip Serpinf1_3" } ] @@ -1279,10 +1361,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "CS202002013_18|CS202002013_19|CS202002013_20|CS202002013_21|CS202002013_22|CS202002013_23|CS202002013_24|CS202002013_25|CS202002013_26|CS202002013_27", + "cell_type_card": "No", "_row": "n25" } ], @@ -1307,10 +1391,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": 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RNA-Seq datasets ", "child_cell_set_accessions": "CS202002013_18|CS202002013_19|CS202002013_20", + "cell_type_card": "No", "_row": "n27" } ], @@ -1368,10 +1456,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", + "cell_type_card": "Cell Type", "_row": "Vip Htr1f" } ] @@ -1396,10 +1486,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "CS202002013_19|CS202002013_20", + "cell_type_card": "No", "_row": "n28" } ], @@ -1429,10 +1521,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", + "cell_type_card": "Cell Type", "_row": "Vip Gpc3" } ] @@ -1462,10 +1556,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", + "cell_type_card": "Cell Type", "_row": "Vip C1ql1" } ] @@ -1490,14 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"Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "CS202002013_22|CS202002013_23", + "cell_type_card": "No", "_row": "n31" } ], @@ -1616,10 +1720,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", + "cell_type_card": "Cell Type", "_row": "Vip Mybpc1_1" } ] @@ -1649,10 +1755,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", + "cell_type_card": "Cell Type", "_row": "Vip Chat_1" } ] @@ -1679,10 +1787,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "CS202002013_24|CS202002013_25", + "cell_type_card": "No", "_row": "n32" } ], @@ -1712,10 +1822,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", + "cell_type_card": "Cell Type", "_row": "Vip Mybpc1_3" } ] @@ -1745,10 +1857,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", + "cell_type_card": "Cell Type", "_row": "Vip Chat_2" } ] @@ -1767,24 +1881,26 @@ "members": 2, "midpoint": 0.5, "height": 0.0169, - "label": "Vip_4", + "label": "Vip-like_C4", "edgePar.col": "#000000", "edgePar.lwd": 2, "edgePar.conf": 1, - "cell_set_preferred_alias": "Vip_4", + "cell_set_preferred_alias": "Vip-like_C4", "original_label": "n33", "cell_set_label": "RNAseq 026-027", "cell_set_accession": "CS202002013_149", "cell_set_aligned_alias": "", - "cell_set_additional_alias": "Vip_4|??? VIP cell", + "cell_set_additional_alias": "Vip_4|Uncharacterized VIP cell", "cell_set_alias_assignee": "Zizhen Yao|Nikolas Jorstad|Federico Scala", "cell_set_alias_citation": "10.1101/2020.02.29.970558|10.1101/2020.03.31.016972|10.1101/2020.02.03.929158", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "CS202002013_26|CS202002013_27", + "cell_type_card": "No", "_row": "n33" } ], @@ -1792,7 +1908,7 @@ { "leaf_attributes": [ { - "label": "Vip Igfbp6_1", + "label": "Vip-like Igfbp6_1", "members": 1, "height": 0, "leaf": true, @@ -1804,20 +1920,22 @@ "nodePar.lab.col": "#7779BF", "nodePar.cex": 0.5, "nodePar.col": "#7779BF", - "cell_set_preferred_alias": "Vip Igfbp6_1", + "cell_set_preferred_alias": "Vip-like Igfbp6_1", 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MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", + "cell_type_card": "Cell Type", "_row": "Sst Calb2" } ] @@ -2718,10 +2892,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", + "cell_type_card": "Cell Type", "_row": "Sst Pappa" } ] @@ -2755,10 +2931,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558|10.1101/2020.02.03.929158", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", + "cell_type_card": "Cell Type", "_row": "Sst Pvalb Calb2" } ] @@ -2777,11 +2955,11 @@ "members": 4, "midpoint": 1.5, "height": 0.0278, - "label": "", + "label": "L5/6 non-Martinotti cell", "edgePar.col": "#000000", "edgePar.lwd": 2, "edgePar.conf": 1, - "cell_set_preferred_alias": "", + "cell_set_preferred_alias": "L5/6 non-Martinotti cell", "original_label": "n49", "cell_set_label": "RNAseq 042-045", "cell_set_accession": "CS202002013_165", @@ -2791,10 +2969,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558|10.1101/2020.02.03.929158", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "CS202002013_42|CS202002013_43|CS202002013_44|CS202002013_45", + "cell_type_card": "No", "_row": 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BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", + "cell_type_card": "Cell Type", "_row": "L6b Shisa6_2" } ] @@ -5438,10 +5784,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", + "cell_type_card": "Cell Type", "_row": "L6b Ror1" } ] @@ -5475,10 +5823,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", + 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"cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "CS202002013_97|CS202002013_98", + "cell_type_card": "No", "_row": "n99" } ], @@ -6151,10 +6541,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", + "cell_type_card": "Cell Type", "_row": "Oligo Enpp6_3" } ] @@ -6184,10 +6576,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": 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"taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", + "cell_type_card": "Cell Type", "_row": "Oligo Opalin_3" } ] @@ -6406,10 +6812,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", + "cell_type_card": "Cell Type", "_row": "Oligo Opalin_4" } ] @@ -6428,24 +6836,26 @@ "members": 14, "midpoint": 7.5469, "height": 0.742, - "label": "", + "label": "Non-neural", "edgePar.col": "#000000", "edgePar.lwd": 2, "edgePar.conf": 1, - "cell_set_preferred_alias": "", + "cell_set_preferred_alias": "Non-neural", "original_label": "n103", "cell_set_label": "RNAseq 103-116", "cell_set_accession": "CS202002013_219", - 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"cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", + "cell_type_card": "Cell Type,Subclass", "_row": "Endo" } ] @@ -6531,10 +6945,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_108|CS202002013_109|CS202002013_110|CS202002013_111|CS202002013_112", + "cell_type_card": "No", "_row": "n105" } ], @@ -6559,10 +6975,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_108|CS202002013_109|CS202002013_110", + "cell_type_card": "Subclass", "_row": "n106" } ], @@ -6587,10 +7005,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107", + "cell_type_card": "No", "_row": "n107" } ], @@ -6615,10 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"cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", + "cell_type_card": "Cell Type", "_row": "VLMC_2" } ] @@ -6711,10 +7137,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "CS202002013_106|CS202002013_107", + "cell_type_card": "No", "_row": "n109" } ], @@ -6744,10 +7172,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", + "cell_type_card": "Cell Type", "_row": "VLMC_3" } ] @@ -6777,10 +7207,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", + "cell_type_card": "Cell Type", "_row": "VLMC_4" } ] @@ -6809,10 +7241,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "CS202002013_108|CS202002013_109|CS202002013_110", + "cell_type_card": "No", "_row": "n110" } ], @@ -6837,10 +7271,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "CS202002013_108|CS202002013_109", + "cell_type_card": "No", "_row": "n111" } ], @@ -6870,10 +7306,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", + "cell_type_card": "Cell Type", "_row": "VLMC_5" } ] @@ -6903,10 +7341,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", + "cell_type_card": "Cell Type", "_row": "VLMC_6" } ] @@ -6938,10 +7378,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", + "cell_type_card": "Cell Type", "_row": "VLMC_7" } ] @@ -6970,10 +7412,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "CS202002013_111|CS202002013_112", + "cell_type_card": "No", "_row": "n112" } ], @@ -7003,10 +7447,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", + "cell_type_card": "Cell Type,Subclass", "_row": "SMC" } ] @@ -7036,10 +7482,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", + "cell_type_card": "Cell Type,Subclass", "_row": "Peri" } ] @@ -7070,10 +7518,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "CS202002013_113|CS202002013_114|CS202002013_115|CS202002013_116", + "cell_type_card": "Subclass", "_row": "n113" } ], @@ -7098,10 +7548,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "CS202002013_113|CS202002013_114|CS202002013_115", + "cell_type_card": "No", "_row": "n114" } ], @@ -7131,10 +7583,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", + "cell_type_card": "Cell Type", "_row": "Micro" } ] @@ -7159,10 +7613,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "CS202002013_114|CS202002013_115", + "cell_type_card": "No", "_row": "n115" } ], @@ -7192,10 +7648,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", + "cell_type_card": "Cell Type", "_row": "PVM_1" } ] @@ -7225,10 +7683,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", + "cell_type_card": "Cell Type", "_row": "PVM_2" } ] @@ -7262,10 +7722,12 @@ "cell_set_alias_citation": "10.1101/2020.02.29.970558", "cell_set_structure": "primary motor cortex", "cell_set_ontology_tag": "UBERON:0001384", - "taxonomy_id": "CCN202002013", "species": "Mouse", "modality": "RNAseq", + "taxonomy_id": "CCN202002013", + "taxonomy_description": "Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ", "child_cell_set_accessions": "", + "cell_type_card": "Cell Type", "_row": "PVM_3" } ] diff --git a/src/dendrograms/nomenclature_table_CCN202002013.csv b/src/dendrograms/nomenclature_table_CCN202002013.csv index fce329d1..2fa461e0 100644 --- a/src/dendrograms/nomenclature_table_CCN202002013.csv +++ b/src/dendrograms/nomenclature_table_CCN202002013.csv @@ -1,258 +1,258 @@ -cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,taxonomy_id,species,modality,child_cell_set_accessions,cell_type_card -Lamp5 Pax6,Lamp5 Pax6,RNAseq 001,CS202002013_1,,Lamp5_4,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Lamp5 Egln3_1,Lamp5 Egln3_1,RNAseq 002,CS202002013_2,,Sncg_4|Alpha7 cell,Zizhen Yao|Nikolas Jorstad|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Lamp5 Egln3_2,Lamp5 Egln3_2,RNAseq 003,CS202002013_3,,Canopy cell,Zizhen Yao|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Lamp5 Egln3_3,Lamp5 Egln3_3,RNAseq 004,CS202002013_4,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Lamp5 Pdlim5_1,Lamp5 Pdlim5_1,RNAseq 005,CS202002013_5,,Lamp5_1,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Lamp5 Pdlim5_2,Lamp5 Pdlim5_2,RNAseq 006,CS202002013_6,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Lamp5 Slc35d3,Lamp5 Slc35d3,RNAseq 007,CS202002013_7,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Lamp5 Lhx6,Lamp5 Lhx6,RNAseq 008,CS202002013_8,Lamp5 Lhx6,Lamp5_3|L5/6 neurogliaform cell,Zizhen Yao||Nikolas Jorstad|Federico Scala,10.1101/2020.02.29.970558||10.1101/2020.03.31.016972|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Sncg Col14a1,Sncg Col14a1,RNAseq 009,CS202002013_9,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Sncg Slc17a8,Sncg Slc17a8,RNAseq 010,CS202002013_10,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Sncg Calb1_1,Sncg Calb1_1,RNAseq 011,CS202002013_11,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Sncg Calb1_2,Sncg Calb1_2,RNAseq 012,CS202002013_12,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Sncg Npy2r,Sncg Npy2r,RNAseq 013,CS202002013_13,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Vip Sncg,Vip Sncg,RNAseq 014,CS202002013_14,,Small CCK basket cell,Zizhen Yao|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Vip Serpinf1_1,Vip Serpinf1_1,RNAseq 015,CS202002013_15,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Vip Serpinf1_2,Vip Serpinf1_2,RNAseq 016,CS202002013_16,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Vip Serpinf1_3,Vip Serpinf1_3,RNAseq 017,CS202002013_17,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Vip Htr1f,Vip Htr1f,RNAseq 018,CS202002013_18,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Vip Gpc3,Vip Gpc3,RNAseq 019,CS202002013_19,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Vip C1ql1,Vip C1ql1,RNAseq 020,CS202002013_20,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Vip Mybpc1_2,Vip Mybpc1_2,RNAseq 021,CS202002013_21,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Vip Mybpc1_1,Vip Mybpc1_1,RNAseq 022,CS202002013_22,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Vip Chat_1,Vip Chat_1,RNAseq 023,CS202002013_23,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Vip Mybpc1_3,Vip Mybpc1_3,RNAseq 024,CS202002013_24,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Vip Chat_2,Vip Chat_2,RNAseq 025,CS202002013_25,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Vip Igfbp6_1,Vip Igfbp6_1,RNAseq 026,CS202002013_26,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Vip Igfbp6_2,Vip Igfbp6_2,RNAseq 027,CS202002013_27,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Sst Chodl,Sst Chodl,RNAseq 028,CS202002013_28,Sst Chodl,Sst Chodl|Long-projecting SST cell,Zizhen Yao||Nikolas Jorstad|Federico Scala,10.1101/2020.02.29.970558||10.1101/2020.03.31.016972|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,"Cell Type,Subclass" -Sst Penk,Sst Penk,RNAseq 029,CS202002013_29,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Sst Myh8_1,Sst Myh8_1,RNAseq 030,CS202002013_30,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Sst Myh8_2,Sst Myh8_2,RNAseq 031,CS202002013_31,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Sst Myh8_3,Sst Myh8_3,RNAseq 032,CS202002013_32,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Sst Htr1a,Sst Htr1a,RNAseq 033,CS202002013_33,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Sst Etv1,Sst Etv1,RNAseq 034,CS202002013_34,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Sst Pvalb Etv1,Sst Pvalb Etv1,RNAseq 035,CS202002013_35,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Sst Crhr2_1,Sst Crhr2_1,RNAseq 036,CS202002013_36,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Sst Crhr2_2,Sst Crhr2_2,RNAseq 037,CS202002013_37,,Sst_4,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Sst Hpse,Sst Hpse,RNAseq 038,CS202002013_38,,L4 SST cell,Zizhen Yao|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Sst Calb2,Sst Calb2,RNAseq 039,CS202002013_39,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Sst Pappa,Sst Pappa,RNAseq 040,CS202002013_40,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Sst Pvalb Calb2,Sst Pvalb Calb2,RNAseq 041,CS202002013_41,,L2/3 PV-like cell,Zizhen Yao|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Sst C1ql3_1,Sst C1ql3_1,RNAseq 042,CS202002013_42,,Sst_5,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Sst C1ql3_2,Sst C1ql3_2,RNAseq 043,CS202002013_43,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Sst Tac2,Sst Tac2,RNAseq 044,CS202002013_44,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Sst Th_1,Sst Th_1,RNAseq 045,CS202002013_45,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Sst Th_2,Sst Th_2,RNAseq 046,CS202002013_46,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Sst Th_3,Sst Th_3,RNAseq 047,CS202002013_47,,Sst_7,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Pvalb Gabrg1,Pvalb Gabrg1,RNAseq 048,CS202002013_48,,L6 FS cell w/ large sag,Zizhen Yao|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Pvalb Egfem1,Pvalb Egfem1,RNAseq 049,CS202002013_49,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Pvalb Gpr149,Pvalb Gpr149,RNAseq 050,CS202002013_50,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Pvalb Kank4,Pvalb Kank4,RNAseq 051,CS202002013_51,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Pvalb Calb1_1,Pvalb Calb1_1,RNAseq 052,CS202002013_52,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Pvalb Calb1_2,Pvalb Calb1_2,RNAseq 053,CS202002013_53,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Pvalb Reln,Pvalb Reln,RNAseq 054,CS202002013_54,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Pvalb Il1rapl2,Pvalb Il1rapl2,RNAseq 055,CS202002013_55,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Pvalb Vipr2_1,Pvalb Vipr2_1,RNAseq 056,CS202002013_56,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Pvalb Vipr2_2,Pvalb Vipr2_2,RNAseq 057,CS202002013_57,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -L2/3 IT_1,L2/3 IT_1,RNAseq 058,CS202002013_58,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -L2/3 IT_2,L2/3 IT_2,RNAseq 059,CS202002013_59,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -L2/3 IT_3,L2/3 IT_3,RNAseq 060,CS202002013_60,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -L4/5 IT_1,L4/5 IT_1,RNAseq 061,CS202002013_61,,L4 IT,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -L4/5 IT_2,L4/5 IT_2,RNAseq 062,CS202002013_62,,L4/5 IT,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -L5 IT_1,L5 IT_1,RNAseq 063,CS202002013_63,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -L5 IT_2,L5 IT_2,RNAseq 064,CS202002013_64,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -L5 IT_3,L5 IT_3,RNAseq 065,CS202002013_65,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -L5 IT_4,L5 IT_4,RNAseq 066,CS202002013_66,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -L6 IT_1,L6 IT_1,RNAseq 067,CS202002013_67,,L6 IT_1,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -L6 IT_2,L6 IT_2,RNAseq 068,CS202002013_68,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -L6 IT Car3,L6 IT Car3,RNAseq 069,CS202002013_69,L6 IT Car3,L6 IT_3|Claustrum-like IT,Zizhen Yao||Nikolas Jorstad|Federico Scala,10.1101/2020.02.29.970558||10.1101/2020.03.31.016972|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,"Cell Type,Subclass" -L5 ET_1,L5 ET_1,RNAseq 070,CS202002013_70,,MY-projecting L5 ET|L5 ET (MY-projecting)|L5 PT_1,Zizhen Yao|Federico Scala|Bosiljka Tasic,10.1101/2020.02.29.970558|10.1101/2020.02.03.929158|10.1038/s41586-018-0654-5,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -L5 ET_2,L5 ET_2,RNAseq 071,CS202002013_71,,L5 ET_2|L5 PT_2,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -L5 ET_3,L5 ET_3,RNAseq 072,CS202002013_72,,L5 PT_3,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -L5 ET_4,L5 ET_4,RNAseq 073,CS202002013_73,,L5 PT_4,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -L5/6 NP CT,L5/6 NP CT,RNAseq 074,CS202002013_74,,L5 IT_3,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -L6 CT Gpr139,L6 CT Gpr139,RNAseq 075,CS202002013_75,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -L6 CT Cpa6,L6 CT Cpa6,RNAseq 076,CS202002013_76,,L6 CT_2,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -L6 CT Grp,L6 CT Grp,RNAseq 077,CS202002013_77,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -L6 CT Pou3f2,L6 CT Pou3f2,RNAseq 078,CS202002013_78,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -L6 CT Kit_1,L6 CT Kit_1,RNAseq 079,CS202002013_79,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -L6 CT Kit_2,L6 CT Kit_2,RNAseq 080,CS202002013_80,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -L6b Col6a1,L6b Col6a1,RNAseq 081,CS202002013_81,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -L6b Shisa6_1,L6b Shisa6_1,RNAseq 082,CS202002013_82,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -L6b Shisa6_2,L6b Shisa6_2,RNAseq 083,CS202002013_83,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -L6b Ror1,L6b Ror1,RNAseq 084,CS202002013_84,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -L6b Kcnip1,L6b Kcnip1,RNAseq 085,CS202002013_85,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -L5/6 NP_1,L5/6 NP_1,RNAseq 086,CS202002013_86,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -L5/6 NP_2,L5/6 NP_2,RNAseq 087,CS202002013_87,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -L5/6 NP_3,L5/6 NP_3,RNAseq 088,CS202002013_88,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Meis2,Meis2,RNAseq 089,CS202002013_89,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Meis2_Top2a,Meis2_Top2a,RNAseq 090,CS202002013_90,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -OPC Pdgfra,OPC Pdgfra,RNAseq 091,CS202002013_91,OPC,OPC,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,"Cell Type,Subclass" -Astro_Top2a,Astro_Top2a,RNAseq 092,CS202002013_92,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Astro Aqp4_Gfap,Astro Aqp4_Gfap,RNAseq 093,CS202002013_93,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Astro Aqp4_Slc7a10,Astro Aqp4_Slc7a10,RNAseq 094,CS202002013_94,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Oligo Enpp6_1,Oligo Enpp6_1,RNAseq 095,CS202002013_95,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Oligo Enpp6_2,Oligo Enpp6_2,RNAseq 096,CS202002013_96,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Oligo Enpp6_3,Oligo Enpp6_3,RNAseq 097,CS202002013_97,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Oligo Enpp6_4,Oligo Enpp6_4,RNAseq 098,CS202002013_98,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,,Cell Type -Oligo Opalin_1,Oligo 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015-017,CS202002013_139,,L5/6 CCK cell,Zizhen Yao|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_15|CS202002013_16|CS202002013_17,No -,,RNAseq 015-016,CS202002013_140,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_15|CS202002013_16,No -,,RNAseq 018-027,CS202002013_141,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_18|CS202002013_19|CS202002013_20|CS202002013_21|CS202002013_22|CS202002013_23|CS202002013_24|CS202002013_25|CS202002013_26|CS202002013_27,No -,,RNAseq 018-025,CS202002013_142,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_18|CS202002013_19|CS202002013_20|CS202002013_21|CS202002013_22|CS202002013_23|CS202002013_24|CS202002013_25,No -L5 VIP cell,L5 VIP cell,RNAseq 018-020,CS202002013_143,,L5 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-Chandelier,Chandelier,RNAseq 056-057,CS202002013_178,Chandelier,Chandelier cell,Zizhen Yao||Federico Scala,10.1101/2020.02.29.970558||10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_56|CS202002013_57,No -Glutamatergic,Glutamatergic,RNAseq 058-088,CS202002013_179,Neuronal: Glutamatergic,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_58|CS202002013_59|CS202002013_60|CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66|CS202002013_67|CS202002013_68|CS202002013_69|CS202002013_70|CS202002013_71|CS202002013_72|CS202002013_73|CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80|CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85|CS202002013_86|CS202002013_87|CS202002013_88,Class -,,RNAseq 058-085,CS202002013_180,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor 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cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_58|CS202002013_59|CS202002013_60|CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66|CS202002013_67|CS202002013_68|CS202002013_69,No -L2/3 IT,L2/3 IT,RNAseq 058-060,CS202002013_183,L2/3 IT,L2/3 IT,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_58|CS202002013_59|CS202002013_60,Subclass -,,RNAseq 058-059,CS202002013_184,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_58|CS202002013_59,No -,,RNAseq 061-069,CS202002013_185,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66|CS202002013_67|CS202002013_68|CS202002013_69,No -,,RNAseq 061-068,CS202002013_186,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor 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cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_63|CS202002013_64,No -,,RNAseq 065-066,CS202002013_191,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_65|CS202002013_66,No -L6 IT,L6 IT,RNAseq 067-068,CS202002013_192,L6 IT,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_67|CS202002013_68,Subclass -L5 ET,L5 ET,RNAseq 070-073,CS202002013_193,L5 ET,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_70|CS202002013_71|CS202002013_72|CS202002013_73,Subclass -L5 ET (Non-MY-projecting),L5 ET (Non-MY-projecting),RNAseq 071-073,CS202002013_194,,L5 ET (Non-MY-projecting)|Non-MY-projecting L5 ET,Zizhen Yao|Bosiljka Tasic|Federico Scala,10.1101/2020.02.29.970558|10.1038/s41586-018-0654-5|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_71|CS202002013_72|CS202002013_73,No -,,RNAseq 071-072,CS202002013_195,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_71|CS202002013_72,No -,,RNAseq 074-085,CS202002013_196,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80|CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85,No -L6 CT,L6 CT,RNAseq 074-080,CS202002013_197,L6 CT,Corticothalamic|VAL/VM Projecting,Zizhen Yao|||Federico Scala,10.1101/2020.02.29.970558|||10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80,Subclass -,,RNAseq 075-080,CS202002013_198,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80,No -,,RNAseq 075-078,CS202002013_199,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78,No -,,RNAseq 076-078,CS202002013_200,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_76|CS202002013_77|CS202002013_78,No -,,RNAseq 077-078,CS202002013_201,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_77|CS202002013_78,No -,,RNAseq 079-080,CS202002013_202,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_79|CS202002013_80,No -L6b,L6b,RNAseq 081-085,CS202002013_203,L6b,L6b|L6b subplate,Zizhen Yao||Nikolas Jorstad|Federico Scala,10.1101/2020.02.29.970558||10.1101/2020.03.31.016972|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85,Subclass -,,RNAseq 081-084,CS202002013_204,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84,No -,,RNAseq 082-084,CS202002013_205,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_82|CS202002013_83|CS202002013_84,No -,,RNAseq 082-083,CS202002013_206,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_82|CS202002013_83,No -L5/6 NP,L5/6 NP,RNAseq 086-088,CS202002013_207,L5/6 NP,L5/6 NP|Near-projecting,Zizhen Yao||Nikolas Jorstad|Federico Scala,10.1101/2020.02.29.970558||10.1101/2020.03.31.016972|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_86|CS202002013_87|CS202002013_88,Subclass -,,RNAseq 086-087,CS202002013_208,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_86|CS202002013_87,No -Meis2,Meis2,RNAseq 089-090,CS202002013_209,Meis2,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_89|CS202002013_90,Subclass -Astro,Astro,RNAseq 092-094,CS202002013_210,Astrocyte,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_92|CS202002013_93|CS202002013_94,Subclass -Astro_C1,Astro_C1,RNAseq 093-094,CS202002013_211,,Astro_1,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_93|CS202002013_94,No -Oligo,Oligo,RNAseq 095-102,CS202002013_212,Oligodendrocyte,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_95|CS202002013_96|CS202002013_97|CS202002013_98|CS202002013_99|CS202002013_100|CS202002013_101|CS202002013_102,Subclass -,,RNAseq 095-098,CS202002013_213,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_95|CS202002013_96|CS202002013_97|CS202002013_98,No -,,RNAseq 095-096,CS202002013_214,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_95|CS202002013_96,No -,,RNAseq 097-098,CS202002013_215,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_97|CS202002013_98,No -,,RNAseq 099-102,CS202002013_216,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_99|CS202002013_100|CS202002013_101|CS202002013_102,No -,,RNAseq 099-100,CS202002013_217,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_99|CS202002013_100,No -,,RNAseq 101-102,CS202002013_218,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_101|CS202002013_102,No -Non-neural,Non-neural,RNAseq 103-116,CS202002013_219,Non-neural,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_103|CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_108|CS202002013_109|CS202002013_110|CS202002013_111|CS202002013_112|CS202002013_113|CS202002013_114|CS202002013_115|CS202002013_116,Class -,,RNAseq 103-112,CS202002013_220,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor 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104-105,CS202002013_224,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_104|CS202002013_105,No -,,RNAseq 106-107,CS202002013_225,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_106|CS202002013_107,No -,,RNAseq 108-110,CS202002013_226,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_108|CS202002013_109|CS202002013_110,No -,,RNAseq 108-109,CS202002013_227,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_108|CS202002013_109,No -,,RNAseq 111-112,CS202002013_228,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_111|CS202002013_112,No -Micro-PVM,Micro-PVM,RNAseq 113-116,CS202002013_229,Microglia-PVM,Microglia/PVM,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_113|CS202002013_114|CS202002013_115|CS202002013_116,Subclass -,,RNAseq 113-115,CS202002013_230,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_113|CS202002013_114|CS202002013_115,No -,,RNAseq 114-115,CS202002013_231,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_114|CS202002013_115,No -Sst,Sst,RNAseq 029-047,CS202002013_232,Sst,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_29|CS202002013_30|CS202002013_31|CS202002013_32|CS202002013_33|CS202002013_34|CS202002013_35|CS202002013_36|CS202002013_37|CS202002013_38|CS202002013_39|CS202002013_40|CS202002013_41|CS202002013_42|CS202002013_43|CS202002013_44|CS202002013_45|CS202002013_46|CS202002013_47,Subclass -Pvalb,Pvalb,RNAseq 048-057,CS202002013_233,Pvalb,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_48|CS202002013_49|CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53|CS202002013_54|CS202002013_55|CS202002013_56|CS202002013_57,Subclass -Non-IT projecting,Non-IT projecting,RNAseq 070-088,CS202002013_234,Non-IT projecting,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_70|CS202002013_71|CS202002013_72|CS202002013_73|CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80|CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85|CS202002013_86|CS202002013_87|CS202002013_88,No -Non-Neuronal,Non-Neuronal,RNAseq 091-102,CS202002013_235,Non-neuronal,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor 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011-013,CS202002013_239,,Sncg_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_11|CS202002013_12|CS202002013_13,No -Sncg_C1,Sncg_C1,"RNAseq 014, 016",CS202002013_240,,Sncg_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_14|CS202002013_16,No -Vip_C3,Vip_C3,"RNAseq 015, 019, 022",CS202002013_241,,Vip_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_15|CS202002013_19|CS202002013_22,No -Vip_C2,Vip_C2,"RNAseq 017-018, 020-021",CS202002013_242,,Vip_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_17|CS202002013_18|CS202002013_20|CS202002013_21,No -Vip_C1,Vip_C1,RNAseq 023-025,CS202002013_243,,Vip_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor 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CT_C1,"RNAseq 075, 077-081",CS202002013_252,,L6 CT_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_75|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80|CS202002013_81,No -Oligo_C2,Oligo_C2,"RNAseq 098, 110-112",CS202002013_253,,Oligo_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_98|CS202002013_110|CS202002013_111|CS202002013_112,No -VLMC(i),VLMC(i),"RNAseq 104-107, 110",CS202002013_254,,VLMC(i),Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_110,No -Large CCK basket cell,Large CCK basket cell,RNAseq 009-012,CS202002013_255,,Large CCK basket cell,Federico Scala,10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_9|CS202002013_10|CS202002013_11|CS202002013_12,No -L5 T Martinotti cell,L5 T Martinotti cell,RNAseq 030-032,CS202002013_256,,L5 T Martinotti cell,Federico Scala,10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_30|CS202002013_31|CS202002013_32,No -Lower FS Basket cell,Lower FS Basket cell,RNAseq 049-053,CS202002013_257,,Lower FS Basket cell,Federico Scala,10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,CCN202002013,Mouse,RNAseq,CS202002013_49|CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53,No \ No newline at end of file +cell_set_preferred_alias,original_label,cell_set_label,cell_set_accession,cell_set_aligned_alias,cell_set_additional_alias,cell_set_alias_assignee,cell_set_alias_citation,cell_set_structure,cell_set_ontology_tag,species,modality,taxonomy_id,taxonomy_description,child_cell_set_accessions,cell_type_card +Lamp5-like Pax6,Lamp5 Pax6,RNAseq 001,CS202002013_1,,Lamp5_4|Lamp5 Pax6,Zizhen Yao|Nikolas Jorstad|Zizhen Yao,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972|10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Lamp5 Egln3_1,Lamp5 Egln3_1,RNAseq 002,CS202002013_2,,Sncg_4|Alpha7 cell,Zizhen Yao|Nikolas Jorstad|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Lamp5-like Egln3_2,Lamp5 Egln3_2,RNAseq 003,CS202002013_3,,Canopy cell|Lamp5 Egln3_2,Zizhen Yao|Federico Scala|Zizhen Yao,10.1101/2020.02.29.970558|10.1101/2020.02.03.929158|10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Lamp5 Egln3_3,Lamp5 Egln3_3,RNAseq 004,CS202002013_4,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Lamp5 Pdlim5_1,Lamp5 Pdlim5_1,RNAseq 005,CS202002013_5,,Lamp5_1,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Lamp5 Pdlim5_2,Lamp5 Pdlim5_2,RNAseq 006,CS202002013_6,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Lamp5 Slc35d3,Lamp5 Slc35d3,RNAseq 007,CS202002013_7,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Lamp5 Lhx6,Lamp5 Lhx6,RNAseq 008,CS202002013_8,Lamp5 Lhx6,Lamp5_3|L5/6 neurogliaform cell,Zizhen Yao||Nikolas Jorstad|Federico Scala,10.1101/2020.02.29.970558||10.1101/2020.03.31.016972|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Sncg Col14a1,Sncg Col14a1,RNAseq 009,CS202002013_9,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Sncg Slc17a8,Sncg Slc17a8,RNAseq 010,CS202002013_10,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Sncg Calb1_1,Sncg Calb1_1,RNAseq 011,CS202002013_11,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Sncg Calb1_2,Sncg Calb1_2,RNAseq 012,CS202002013_12,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Sncg Npy2r,Sncg Npy2r,RNAseq 013,CS202002013_13,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Vip Sncg,Vip Sncg,RNAseq 014,CS202002013_14,,Small CCK basket cell,Zizhen Yao|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Vip Serpinf1_1,Vip Serpinf1_1,RNAseq 015,CS202002013_15,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Vip Serpinf1_2,Vip Serpinf1_2,RNAseq 016,CS202002013_16,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Vip-like Serpinf1_3,Vip Serpinf1_3,RNAseq 017,CS202002013_17,,Vip Serpinf1_3,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Vip Htr1f,Vip Htr1f,RNAseq 018,CS202002013_18,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Vip Gpc3,Vip Gpc3,RNAseq 019,CS202002013_19,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Vip C1ql1,Vip C1ql1,RNAseq 020,CS202002013_20,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Vip Mybpc1_2,Vip Mybpc1_2,RNAseq 021,CS202002013_21,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Vip Mybpc1_1,Vip Mybpc1_1,RNAseq 022,CS202002013_22,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Vip Chat_1,Vip Chat_1,RNAseq 023,CS202002013_23,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Vip Mybpc1_3,Vip Mybpc1_3,RNAseq 024,CS202002013_24,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Vip Chat_2,Vip Chat_2,RNAseq 025,CS202002013_25,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Vip-like Igfbp6_1,Vip Igfbp6_1,RNAseq 026,CS202002013_26,,Vip Igfbp6_1,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Vip Igfbp6_2,Vip Igfbp6_2,RNAseq 027,CS202002013_27,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Sst Chodl,Sst Chodl,RNAseq 028,CS202002013_28,Sst Chodl,Sst Chodl|Long-projecting SST cell,Zizhen Yao||Nikolas Jorstad|Federico Scala,10.1101/2020.02.29.970558||10.1101/2020.03.31.016972|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,"Cell Type,Subclass" +Sst Penk,Sst Penk,RNAseq 029,CS202002013_29,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Sst Myh8_1,Sst Myh8_1,RNAseq 030,CS202002013_30,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Sst Myh8_2,Sst Myh8_2,RNAseq 031,CS202002013_31,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Sst Myh8_3,Sst Myh8_3,RNAseq 032,CS202002013_32,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Sst Htr1a,Sst Htr1a,RNAseq 033,CS202002013_33,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Sst Etv1,Sst Etv1,RNAseq 034,CS202002013_34,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Sst Pvalb Etv1,Sst Pvalb Etv1,RNAseq 035,CS202002013_35,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Sst Crhr2_1,Sst Crhr2_1,RNAseq 036,CS202002013_36,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Sst Crhr2_2,Sst Crhr2_2,RNAseq 037,CS202002013_37,,Sst_4,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Sst Hpse,Sst Hpse,RNAseq 038,CS202002013_38,,L4 SST cell,Zizhen Yao|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Sst Calb2,Sst Calb2,RNAseq 039,CS202002013_39,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Sst Pappa,Sst Pappa,RNAseq 040,CS202002013_40,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Sst Pvalb Calb2,Sst Pvalb Calb2,RNAseq 041,CS202002013_41,,L2/3 PV-like cell,Zizhen Yao|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Sst C1ql3_1,Sst C1ql3_1,RNAseq 042,CS202002013_42,,Sst_5,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Sst C1ql3_2,Sst C1ql3_2,RNAseq 043,CS202002013_43,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Sst Tac2,Sst Tac2,RNAseq 044,CS202002013_44,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Sst Th_1,Sst Th_1,RNAseq 045,CS202002013_45,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Sst Th_2,Sst Th_2,RNAseq 046,CS202002013_46,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Sst Th_3,Sst Th_3,RNAseq 047,CS202002013_47,,Sst_7,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Pvalb Gabrg1,Pvalb Gabrg1,RNAseq 048,CS202002013_48,,L6 FS cell w/ large sag,Zizhen Yao|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Pvalb Egfem1,Pvalb Egfem1,RNAseq 049,CS202002013_49,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Pvalb Gpr149,Pvalb Gpr149,RNAseq 050,CS202002013_50,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Pvalb Kank4,Pvalb Kank4,RNAseq 051,CS202002013_51,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Pvalb Calb1_1,Pvalb Calb1_1,RNAseq 052,CS202002013_52,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Pvalb Calb1_2,Pvalb Calb1_2,RNAseq 053,CS202002013_53,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Pvalb Reln,Pvalb Reln,RNAseq 054,CS202002013_54,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Pvalb Il1rapl2,Pvalb Il1rapl2,RNAseq 055,CS202002013_55,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Pvalb Vipr2_1,Pvalb Vipr2_1,RNAseq 056,CS202002013_56,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +Pvalb Vipr2_2,Pvalb Vipr2_2,RNAseq 057,CS202002013_57,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +L2/3 IT_1,L2/3 IT_1,RNAseq 058,CS202002013_58,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +L2/3 IT_2,L2/3 IT_2,RNAseq 059,CS202002013_59,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +L2/3 IT_3,L2/3 IT_3,RNAseq 060,CS202002013_60,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +L4/5 IT_1,L4/5 IT_1,RNAseq 061,CS202002013_61,,L4 IT,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +L4/5 IT_2,L4/5 IT_2,RNAseq 062,CS202002013_62,,L4/5 IT,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +L5 IT_1,L5 IT_1,RNAseq 063,CS202002013_63,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +L5 IT_2,L5 IT_2,RNAseq 064,CS202002013_64,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +L5 IT_3,L5 IT_3,RNAseq 065,CS202002013_65,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +L5 IT_4,L5 IT_4,RNAseq 066,CS202002013_66,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +L6 IT_1,L6 IT_1,RNAseq 067,CS202002013_67,,L6 IT_1,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +L6 IT_2,L6 IT_2,RNAseq 068,CS202002013_68,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +L6 IT Car3,L6 IT Car3,RNAseq 069,CS202002013_69,L6 IT Car3,L6 IT_3|Claustrum-like IT,Zizhen Yao||Nikolas Jorstad|Federico Scala,10.1101/2020.02.29.970558||10.1101/2020.03.31.016972|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,"Cell Type,Subclass" +L5 ET_1,L5 ET_1,RNAseq 070,CS202002013_70,,MY-projecting L5 ET|L5 ET (MY-projecting)|L5 PT_1,Zizhen Yao|Federico Scala|Bosiljka Tasic,10.1101/2020.02.29.970558|10.1101/2020.02.03.929158|10.1038/s41586-018-0654-5,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,,Cell Type +L5 ET_2,L5 ET_2,RNAseq 071,CS202002013_71,,L5 ET_2|L5 PT_2,Zizhen 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cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_31|CS202002013_32|CS202002013_33,No +,n41,RNAseq 031-032,CS202002013_157,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_31|CS202002013_32,No +,n42,RNAseq 034-041,CS202002013_158,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_34|CS202002013_35|CS202002013_36|CS202002013_37|CS202002013_38|CS202002013_39|CS202002013_40|CS202002013_41,No +L5 T Martinotti cell,n43,RNAseq 034-035,CS202002013_159,,L5 T Martinotti cell,Zizhen Yao|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_34|CS202002013_35,No +,n44,RNAseq 036-041,CS202002013_160,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_36|CS202002013_37|CS202002013_38|CS202002013_39|CS202002013_40|CS202002013_41,No +L5 non-Martinotti cell,n45,RNAseq 036-037,CS202002013_161,,L5 non-Martinotti cell,Zizhen Yao|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_36|CS202002013_37,No +,n46,RNAseq 038-041,CS202002013_162,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_38|CS202002013_39|CS202002013_40|CS202002013_41,No +,n47,RNAseq 038-040,CS202002013_163,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_38|CS202002013_39|CS202002013_40,No +L2/3/5 fan Martinotti cell,n48,RNAseq 039-040,CS202002013_164,,L2/3/5 fan Martinotti cell,Zizhen Yao|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_39|CS202002013_40,No +L5/6 non-Martinotti cell,n49,RNAseq 042-045,CS202002013_165,,L5/6 non-Martinotti cell,Zizhen Yao|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_42|CS202002013_43|CS202002013_44|CS202002013_45,No +,n50,RNAseq 042-043,CS202002013_166,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_42|CS202002013_43,No +,n51,RNAseq 044-045,CS202002013_167,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_44|CS202002013_45,No +,n52,RNAseq 046-057,CS202002013_168,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_46|CS202002013_47|CS202002013_48|CS202002013_49|CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53|CS202002013_54|CS202002013_55|CS202002013_56|CS202002013_57,No +,n53,RNAseq 046-048,CS202002013_169,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_46|CS202002013_47|CS202002013_48,No +L6 Th+ SST/PV cell,n54,RNAseq 046-047,CS202002013_170,,L6 Th+ SST/PV cell,Zizhen Yao|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_46|CS202002013_47,No +,n55,RNAseq 049-057,CS202002013_171,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_49|CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53|CS202002013_54|CS202002013_55|CS202002013_56|CS202002013_57,No +,n56,RNAseq 049-055,CS202002013_172,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_49|CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53|CS202002013_54|CS202002013_55,No +,n57,RNAseq 050-055,CS202002013_173,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53|CS202002013_54|CS202002013_55,No +,n58,RNAseq 051-055,CS202002013_174,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_51|CS202002013_52|CS202002013_53|CS202002013_54|CS202002013_55,No +,n59,RNAseq 051-053,CS202002013_175,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_51|CS202002013_52|CS202002013_53,No +,n60,RNAseq 052-053,CS202002013_176,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_52|CS202002013_53,No +Upper FS Basket cell,n61,RNAseq 054-055,CS202002013_177,,Upper FS Basket cell,Zizhen Yao|Federico Scala,10.1101/2020.02.29.970558|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_54|CS202002013_55,No +Chandelier,n62,RNAseq 056-057,CS202002013_178,Chandelier,Chandelier cell,Zizhen Yao||Federico Scala,10.1101/2020.02.29.970558||10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_56|CS202002013_57,No +Glutamatergic,n63,RNAseq 058-088,CS202002013_179,Neuronal: Glutamatergic,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_58|CS202002013_59|CS202002013_60|CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66|CS202002013_67|CS202002013_68|CS202002013_69|CS202002013_70|CS202002013_71|CS202002013_72|CS202002013_73|CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80|CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85|CS202002013_86|CS202002013_87|CS202002013_88,Class +,n64,RNAseq 058-085,CS202002013_180,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_58|CS202002013_59|CS202002013_60|CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66|CS202002013_67|CS202002013_68|CS202002013_69|CS202002013_70|CS202002013_71|CS202002013_72|CS202002013_73|CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80|CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85,No +,n65,RNAseq 058-073,CS202002013_181,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_58|CS202002013_59|CS202002013_60|CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66|CS202002013_67|CS202002013_68|CS202002013_69|CS202002013_70|CS202002013_71|CS202002013_72|CS202002013_73,No +IT projecting,n66,RNAseq 058-069,CS202002013_182,IT projecting,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_58|CS202002013_59|CS202002013_60|CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66|CS202002013_67|CS202002013_68|CS202002013_69,No +L2/3 IT,n67,RNAseq 058-060,CS202002013_183,L2/3 IT,L2/3 IT,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_58|CS202002013_59|CS202002013_60,Subclass +,n68,RNAseq 058-059,CS202002013_184,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_58|CS202002013_59,No +,n69,RNAseq 061-069,CS202002013_185,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66|CS202002013_67|CS202002013_68|CS202002013_69,No +,n70,RNAseq 061-068,CS202002013_186,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66|CS202002013_67|CS202002013_68,No +,n71,RNAseq 061-066,CS202002013_187,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_61|CS202002013_62|CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66,No +L4,n72,RNAseq 061-062,CS202002013_188,L4/5 IT,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_61|CS202002013_62,Subclass +L5 IT,n73,RNAseq 063-066,CS202002013_189,L5 IT,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_63|CS202002013_64|CS202002013_65|CS202002013_66,Subclass +L5 IT_C2,n74,RNAseq 063-064,CS202002013_190,,L5 IT_2,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_63|CS202002013_64,No +,n75,RNAseq 065-066,CS202002013_191,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_65|CS202002013_66,No +L6 IT,n76,RNAseq 067-068,CS202002013_192,L6 IT,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_67|CS202002013_68,Subclass +L5 ET,n77,RNAseq 070-073,CS202002013_193,L5 ET,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_70|CS202002013_71|CS202002013_72|CS202002013_73,Subclass +L5 ET (Non-MY-projecting),n78,RNAseq 071-073,CS202002013_194,,L5 ET (Non-MY-projecting)|Non-MY-projecting L5 ET,Zizhen Yao|Bosiljka Tasic|Federico Scala,10.1101/2020.02.29.970558|10.1038/s41586-018-0654-5|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_71|CS202002013_72|CS202002013_73,No +,n79,RNAseq 071-072,CS202002013_195,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_71|CS202002013_72,No +,n80,RNAseq 074-085,CS202002013_196,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80|CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85,No +L6 CT,n81,RNAseq 074-080,CS202002013_197,L6 CT,Corticothalamic|VAL/VM Projecting,Zizhen Yao|||Federico Scala,10.1101/2020.02.29.970558|||10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80,Subclass +,n82,RNAseq 075-080,CS202002013_198,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80,No +,n83,RNAseq 075-078,CS202002013_199,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78,No +,n84,RNAseq 076-078,CS202002013_200,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_76|CS202002013_77|CS202002013_78,No +,n85,RNAseq 077-078,CS202002013_201,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_77|CS202002013_78,No +,n86,RNAseq 079-080,CS202002013_202,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_79|CS202002013_80,No +L6b,n87,RNAseq 081-085,CS202002013_203,L6b,L6b|L6b subplate,Zizhen Yao||Nikolas Jorstad|Federico Scala,10.1101/2020.02.29.970558||10.1101/2020.03.31.016972|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85,Subclass +,n88,RNAseq 081-084,CS202002013_204,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84,No +,n89,RNAseq 082-084,CS202002013_205,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_82|CS202002013_83|CS202002013_84,No +,n90,RNAseq 082-083,CS202002013_206,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_82|CS202002013_83,No +L5/6 NP,n91,RNAseq 086-088,CS202002013_207,L5/6 NP,L5/6 NP|Near-projecting,Zizhen Yao||Nikolas Jorstad|Federico Scala,10.1101/2020.02.29.970558||10.1101/2020.03.31.016972|10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_86|CS202002013_87|CS202002013_88,Subclass +,n92,RNAseq 086-087,CS202002013_208,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_86|CS202002013_87,No +Meis2,n93,RNAseq 089-090,CS202002013_209,Meis2,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_89|CS202002013_90,Subclass +Astro,n94,RNAseq 092-094,CS202002013_210,Astrocyte,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_92|CS202002013_93|CS202002013_94,Subclass +Astro_C1,n95,RNAseq 093-094,CS202002013_211,,Astro_1,Zizhen Yao|Nikolas Jorstad,10.1101/2020.02.29.970558|10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_93|CS202002013_94,No +Oligo,n96,RNAseq 095-102,CS202002013_212,Oligodendrocyte,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_95|CS202002013_96|CS202002013_97|CS202002013_98|CS202002013_99|CS202002013_100|CS202002013_101|CS202002013_102,Subclass +,n97,RNAseq 095-098,CS202002013_213,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_95|CS202002013_96|CS202002013_97|CS202002013_98,No +,n98,RNAseq 095-096,CS202002013_214,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_95|CS202002013_96,No +,n99,RNAseq 097-098,CS202002013_215,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_97|CS202002013_98,No +,n100,RNAseq 099-102,CS202002013_216,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_99|CS202002013_100|CS202002013_101|CS202002013_102,No +,n101,RNAseq 099-100,CS202002013_217,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_99|CS202002013_100,No +,n102,RNAseq 101-102,CS202002013_218,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_101|CS202002013_102,No +Non-neural,n103,RNAseq 103-116,CS202002013_219,Non-neural,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_103|CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_108|CS202002013_109|CS202002013_110|CS202002013_111|CS202002013_112|CS202002013_113|CS202002013_114|CS202002013_115|CS202002013_116,Class +,n104,RNAseq 103-112,CS202002013_220,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_103|CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_108|CS202002013_109|CS202002013_110|CS202002013_111|CS202002013_112,No +,n105,RNAseq 104-112,CS202002013_221,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_108|CS202002013_109|CS202002013_110|CS202002013_111|CS202002013_112,No +VLMC,n106,RNAseq 104-110,CS202002013_222,VLMC,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_108|CS202002013_109|CS202002013_110,Subclass +,n107,RNAseq 104-107,CS202002013_223,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107,No +,n108,RNAseq 104-105,CS202002013_224,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_104|CS202002013_105,No +,n109,RNAseq 106-107,CS202002013_225,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_106|CS202002013_107,No +,n110,RNAseq 108-110,CS202002013_226,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_108|CS202002013_109|CS202002013_110,No +,n111,RNAseq 108-109,CS202002013_227,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_108|CS202002013_109,No +,n112,RNAseq 111-112,CS202002013_228,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_111|CS202002013_112,No +Micro-PVM,n113,RNAseq 113-116,CS202002013_229,Microglia-PVM,Microglia/PVM,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_113|CS202002013_114|CS202002013_115|CS202002013_116,Subclass +,n114,RNAseq 113-115,CS202002013_230,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_113|CS202002013_114|CS202002013_115,No +,n115,RNAseq 114-115,CS202002013_231,,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_114|CS202002013_115,No +Sst-like,,RNAseq 029-047,CS202002013_232,Sst,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_29|CS202002013_30|CS202002013_31|CS202002013_32|CS202002013_33|CS202002013_34|CS202002013_35|CS202002013_36|CS202002013_37|CS202002013_38|CS202002013_39|CS202002013_40|CS202002013_41|CS202002013_42|CS202002013_43|CS202002013_44|CS202002013_45|CS202002013_46|CS202002013_47,Subclass +Pvalb-like,,RNAseq 048-057,CS202002013_233,Pvalb,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_48|CS202002013_49|CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53|CS202002013_54|CS202002013_55|CS202002013_56|CS202002013_57,Subclass +Non-IT projecting,,RNAseq 070-088,CS202002013_234,Non-IT projecting,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_70|CS202002013_71|CS202002013_72|CS202002013_73|CS202002013_74|CS202002013_75|CS202002013_76|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80|CS202002013_81|CS202002013_82|CS202002013_83|CS202002013_84|CS202002013_85|CS202002013_86|CS202002013_87|CS202002013_88,No +Non-Neuronal,,RNAseq 091-102,CS202002013_235,Non-neuronal,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_91|CS202002013_92|CS202002013_93|CS202002013_94|CS202002013_95|CS202002013_96|CS202002013_97|CS202002013_98|CS202002013_99|CS202002013_100|CS202002013_101|CS202002013_102,Class +Oligo-OPC,,"RNAseq 091,095-102",CS202002013_236,Oligodendrocyte-OPC,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_91|CS202002013_95|CS202002013_96|CS202002013_97|CS202002013_98|CS202002013_99|CS202002013_100|CS202002013_101|CS202002013_102,No +PVM,,RNAseq 114-116,CS202002013_237,PVM,,Zizhen Yao,10.1101/2020.02.29.970558,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_114|CS202002013_115|CS202002013_116,No +Lamp5-like_C2,,RNAseq 006-007,CS202002013_238,,Lamp5_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_6|CS202002013_7,No +Sncg-like_C3,,RNAseq 011-013,CS202002013_239,,Sncg_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_11|CS202002013_12|CS202002013_13,No +Sncg-like_C1,,"RNAseq 014, 016",CS202002013_240,,Sncg_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_14|CS202002013_16,No +Vip-like_C3,,"RNAseq 015, 019, 022",CS202002013_241,,Vip_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_15|CS202002013_19|CS202002013_22,No +Vip-like_C2,,"RNAseq 017-018, 020-021",CS202002013_242,,Vip_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_17|CS202002013_18|CS202002013_20|CS202002013_21,No +Vip-like_C1,,RNAseq 023-025,CS202002013_243,,Vip_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_23|CS202002013_24|CS202002013_25,No +Sst-like_C2,,"RNAseq 029-030, 034",CS202002013_244,,Sst_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_29|CS202002013_30|CS202002013_34,No +Sst-like_C3,,"RNAseq 035-036, 038-041",CS202002013_245,,Sst_3,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_35|CS202002013_36|CS202002013_38|CS202002013_39|CS202002013_40|CS202002013_41,No +Sst-like_C6,,RNAseq 043-045,CS202002013_246,,Sst_6,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_43|CS202002013_44|CS202002013_45,No +Pvalb-like_C1,,"RNAseq 046, 050-055",CS202002013_247,,Pvalb_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_46|CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53|CS202002013_54|CS202002013_55,No +Pvalb-like_C2,,RNAseq 048-049,CS202002013_248,,Pvalb_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_48|CS202002013_49,No +L5 IT_C1,,"RNAseq 061-062, 065",CS202002013_249,,L5 IT_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_61|CS202002013_62|CS202002013_65,No +L6 IT_C2,,"RNAseq 066, 068",CS202002013_250,,L6 IT_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_66|CS202002013_68,No +L5 ET_C1,,"RNAseq 070, 072-073",CS202002013_251,,L5 ET_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_70|CS202002013_72|CS202002013_73,No +L6 CT_C1,,"RNAseq 075, 077-081",CS202002013_252,,L6 CT_1,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_75|CS202002013_77|CS202002013_78|CS202002013_79|CS202002013_80|CS202002013_81,No +Oligo_C2,,"RNAseq 098, 110-112",CS202002013_253,,Oligo_2,Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_98|CS202002013_110|CS202002013_111|CS202002013_112,No +VLMC(i),,"RNAseq 104-107, 110",CS202002013_254,,VLMC(i),Nikolas Jorstad,10.1101/2020.03.31.016972,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_104|CS202002013_105|CS202002013_106|CS202002013_107|CS202002013_110,No +Large CCK basket cell,,RNAseq 009-012,CS202002013_255,,Large CCK basket cell,Federico Scala,10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_9|CS202002013_10|CS202002013_11|CS202002013_12,No +L5 T Martinotti cell,,RNAseq 030-032,CS202002013_256,,L5 T Martinotti cell,Federico Scala,10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_30|CS202002013_31|CS202002013_32,No +Lower FS Basket cell,,RNAseq 049-053,CS202002013_257,,Lower FS Basket cell,Federico Scala,10.1101/2020.02.03.929158,primary motor cortex,UBERON:0001384,Mouse,RNAseq,CCN202002013,Mouse MOp BICCN taxonomy using multiple RNA-Seq datasets ,CS202002013_49|CS202002013_50|CS202002013_51|CS202002013_52|CS202002013_53,No From ea33c629ddb63502fe06fe10d6f2ddf3cf808c36 Mon Sep 17 00:00:00 2001 From: Shawn Tan <76212760+shawntanzk@users.noreply.github.com> Date: Fri, 13 Aug 2021 14:56:37 +0100 Subject: [PATCH 14/17] Update taxonomy_details.yaml removed CS202002013_258, 259, 260, 261 -> move to taxonomy curation --- src/dendrograms/taxonomy_details.yaml | 13 +------------ 1 file changed, 1 insertion(+), 12 deletions(-) diff --git a/src/dendrograms/taxonomy_details.yaml b/src/dendrograms/taxonomy_details.yaml index f203cf6d..f804155d 100644 --- a/src/dendrograms/taxonomy_details.yaml +++ b/src/dendrograms/taxonomy_details.yaml @@ -71,16 +71,5 @@ Cell_type: CL:0000881 #perivascular macrophage # Node: CS202002013_238 #other NN no such CL mapping - - Node: CS202002013_257 - Cell_type: CL:4023007 - #L2/3 bipolar vip - - Node: CS202002013_258 - Cell_type: CL:4023027 - # L5 T-martinotti # Node: CS202002013_259 #lower FS BC - - Node: CS202002013_260 - Cell_type: CL:4023045 - #MY ET - - Node: CS202002013_261 - Cell_type: CL:4023044 - #non-MY ET + From edc1762e507598bc5f99e8aefa72b69165cbf44a Mon Sep 17 00:00:00 2001 From: Shawn Tan <76212760+shawntanzk@users.noreply.github.com> Date: Fri, 13 Aug 2021 15:09:13 +0100 Subject: [PATCH 15/17] Update taxonomy_details.yaml added updated mappings --- src/dendrograms/taxonomy_details.yaml | 13 +++++++++++++ 1 file changed, 13 insertions(+) diff --git a/src/dendrograms/taxonomy_details.yaml b/src/dendrograms/taxonomy_details.yaml index f804155d..3309924a 100644 --- a/src/dendrograms/taxonomy_details.yaml +++ b/src/dendrograms/taxonomy_details.yaml @@ -70,6 +70,19 @@ - Node: CS202002013_237 Cell_type: CL:0000881 #perivascular macrophage + - Node: CS202002013_145 + Cell_type: CL:4023007 + #L2/3 bipolar vip + - Node: CS202002013_159 + Cell_type: CL:4023027 + # L5 T-martinotti + # Node: CS202002013_259 #lower FS BC + - Node: CS202002013_70 + Cell_type: CL:4023045 + #MY ET + - Node: CS202002013_197 + Cell_type: CL:4023044 + #non-MY ET # Node: CS202002013_238 #other NN no such CL mapping # Node: CS202002013_259 #lower FS BC From 1f80da5c2c19cad3911b6d3f3ea7285b2c832a1d Mon Sep 17 00:00:00 2001 From: hkir-dev Date: Fri, 13 Aug 2021 16:02:32 +0100 Subject: [PATCH 16/17] source and tests adapted to the new nomenclature table structure --- src/scripts/dendrogram_tools.py | 1 + src/scripts/template_generation_tools.py | 2 +- src/test/template_generation_test.py | 8 ++++---- 3 files changed, 6 insertions(+), 5 deletions(-) diff --git a/src/scripts/dendrogram_tools.py b/src/scripts/dendrogram_tools.py index f5a588b7..638ca459 100644 --- a/src/scripts/dendrogram_tools.py +++ b/src/scripts/dendrogram_tools.py @@ -7,6 +7,7 @@ def dend_json_2_nodes_n_edges(path_to_json): j = json.loads(f.read()) out = {} tree_recurse(j, out) + f.close() return out diff --git a/src/scripts/template_generation_tools.py b/src/scripts/template_generation_tools.py index 7f9fe402..509a687d 100644 --- a/src/scripts/template_generation_tools.py +++ b/src/scripts/template_generation_tools.py @@ -249,7 +249,7 @@ def generate_non_taxonomy_classification_template(dend_json_path, output_filepat taxon = path_parts[len(path_parts) - 1].split(".")[0] cell_set_accession = 3 - child_cell_set_accessions = 13 + child_cell_set_accessions = 14 nomenclature_path = os.path.join(os.path.dirname(os.path.realpath(__file__)), '../dendrograms/nomenclature_table_{}.csv'.format(taxon)) diff --git a/src/test/template_generation_test.py b/src/test/template_generation_test.py index 742ce756..77a6567c 100644 --- a/src/test/template_generation_test.py +++ b/src/test/template_generation_test.py @@ -99,10 +99,10 @@ def test_non_taxonomy_classification_template_generation(self): self.assertFalse(ALLEN_CLASS + "CS202002013_232" in output) # root self.assertFalse(ALLEN_CLASS + "CS202002013_261" in output) # root - self.assertTrue(ALLEN_CLASS + "CS202002013_28" in output) # child of CS202002013_232 - self.assertEqual("CL:4023017", output[ALLEN_CLASS + "CS202002013_28"][1]) - self.assertTrue(ALLEN_CLASS + "CS202002013_32" in output) # child of CS202002013_232 and CS202002013_235 - self.assertEqual("CL:4023027", output[ALLEN_CLASS + "CS202002013_32"][1]) + self.assertTrue(ALLEN_CLASS + "CS202002013_29" in output) # child of CS202002013_232 + self.assertEqual("CL:4023017", output[ALLEN_CLASS + "CS202002013_29"][1]) + self.assertTrue(ALLEN_CLASS + "CS202002013_32" in output) # child of CS202002013_232 + self.assertEqual("CL:4023017", output[ALLEN_CLASS + "CS202002013_32"][1]) self.assertTrue(ALLEN_CLASS + "CS202002013_40" in output) # child of CS202002013_232 self.assertEqual("CL:4023017", output[ALLEN_CLASS + "CS202002013_40"][1]) self.assertTrue(ALLEN_CLASS + "CS202002013_47" in output) # child of CS202002013_232 From 40a0cac3a2b9e5b8aca3589b3d6260dd1945318d Mon Sep 17 00:00:00 2001 From: Shawn Tan <76212760+shawntanzk@users.noreply.github.com> Date: Fri, 13 Aug 2021 16:16:56 +0100 Subject: [PATCH 17/17] Update taxonomy_details.yaml remove taxonomy nodes --- src/dendrograms/taxonomy_details.yaml | 13 ------------- 1 file changed, 13 deletions(-) diff --git a/src/dendrograms/taxonomy_details.yaml b/src/dendrograms/taxonomy_details.yaml index 3309924a..f804155d 100644 --- a/src/dendrograms/taxonomy_details.yaml +++ b/src/dendrograms/taxonomy_details.yaml @@ -70,19 +70,6 @@ - Node: CS202002013_237 Cell_type: CL:0000881 #perivascular macrophage - - Node: CS202002013_145 - Cell_type: CL:4023007 - #L2/3 bipolar vip - - Node: CS202002013_159 - Cell_type: CL:4023027 - # L5 T-martinotti - # Node: CS202002013_259 #lower FS BC - - Node: CS202002013_70 - Cell_type: CL:4023045 - #MY ET - - Node: CS202002013_197 - Cell_type: CL:4023044 - #non-MY ET # Node: CS202002013_238 #other NN no such CL mapping # Node: CS202002013_259 #lower FS BC

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