From 5f0cdcef08b22f1ebd7abbe7c8f173d52cc87096 Mon Sep 17 00:00:00 2001 From: fhuang Date: Fri, 19 May 2017 17:43:25 -0400 Subject: [PATCH 1/6] modify test --- test/testGetPost.py | 138 +++++++++++++++++++++++++++++++++----------- 1 file changed, 103 insertions(+), 35 deletions(-) diff --git a/test/testGetPost.py b/test/testGetPost.py index c67cc7e..d0830fd 100644 --- a/test/testGetPost.py +++ b/test/testGetPost.py @@ -2,7 +2,13 @@ from glob import glob # test data directory -pattern = os.path.join('test/derivatives/', '*.json') +boldPattern = os.path.join('test/bold/validData', '*.json') +T1wPattern = os.path.join('test/T1w/validData', '*.json') + +# missing field data directory +boldMissingPattern = os.path.join('test/bold/missingField', '*.json') +T1wMissingPattern = os.path.join('test/T1w/missingField', '*.json') + # url for GET def getURL(postResponse, url): @@ -18,68 +24,128 @@ def getRequest(postResponse, url): ###### MAIN ###### header = {'content-type': 'application/json', 'Accept-Charset': 'UTF-8'} numOfTestData = 84 +urlBold = "http://localhost:80/bold" +urlT1w = "http://localhost:80/T1w" +codeForInvalid = 422 class TestCase(unittest.TestCase): - - def test_00_CountFiles(self): - # 1. initialize param. change to others for later use - url = "http://localhost:80/scenarios" - log= logging.getLogger( "SomeTest.testSomething" ) - - count = 0 - - self.assertTrue( count == 0 ) - - count = len(glob(pattern)) - - self.assertTrue( count == numOfTestData ) - - def test_01_GETAllData(self): - # 1. initialize param. change to others for later use - url = "http://localhost:80/scenarios" + def test_00_GETAllData(self): log= logging.getLogger( "SomeTest.testSomething" ) inputCount = 0 - for fileName in glob(pattern): + for fileName in glob(T1wPattern): with open(fileName) as fp: inputCount += 1 inputData = json.load(fp) # POST request - postResponse = requests.post(url, data = json.dumps(inputData), headers = header) + postResponse = requests.post(urlT1w, data = json.dumps(inputData), headers = header) # GET request - getResponse = requests.get(url).json() + # print requests.get(urlT1w) + getResponse = requests.get(urlT1w).json() log.debug( "total: %r", getResponse['_meta']['total'] ) self.assertTrue( inputCount == getResponse['_meta']['total'] ) - def test_02_ConnectionStatus(self): - # 1. initialize param. change to others for later use - url = "http://localhost:80/scenarios" + ########## Testing Bold ############ + def test_01_ConnectionStatus(self): + log= logging.getLogger( "SomeTest.testSomething" ) + + for fileName in glob(boldPattern): + with open(fileName) as fp: + inputData = json.load(fp) + # print inputData + # POST request + postResponse = requests.post(urlBold, data = json.dumps(inputData), headers = header) + self.assertTrue( postResponse.raise_for_status() == None ) + # GET request + getResponse = requests.get( getURL(postResponse, urlBold) ) + self.assertTrue( getResponse.raise_for_status() == None ) + + def test_02_MissingFieldInput(self): + log= logging.getLogger( "SomeTest.testSomething" ) + + for fileName in glob(boldMissingPattern): + with open(fileName) as fp: + inputData = json.load(fp) + # POST request + postResponse = requests.post(urlBold, data = json.dumps(inputData), headers = header) + # print postResponse.status_code + self.assertTrue( postResponse.status_code == codeForInvalid ) + ########## Testing T1w ############ + def test_03_ConnectionStatus(self): log= logging.getLogger( "SomeTest.testSomething" ) - for fileName in glob(pattern): + for fileName in glob(T1wPattern): with open(fileName) as fp: inputData = json.load(fp) + # print inputData # POST request - postResponse = requests.post(url, data = json.dumps(inputData), headers = header) + postResponse = requests.post(urlT1w, data = json.dumps(inputData), headers = header) self.assertTrue( postResponse.raise_for_status() == None ) # GET request - getResponse = requests.get( getURL(postResponse, url) ) + getResponse = requests.get( getURL(postResponse, urlT1w) ) self.assertTrue( getResponse.raise_for_status() == None ) - def test_03_DataValid(self): - # 1. initialize param. change to others for later use - url = "http://localhost:80/scenarios" - - for fileName in glob(pattern): + def test_04_MissingFieldInput(self): + log= logging.getLogger( "SomeTest.testSomething" ) + + for fileName in glob(T1wMissingPattern): + with open(fileName) as fp: + inputData = json.load(fp) + # POST request + postResponse = requests.post(urlT1w, data = json.dumps(inputData), headers = header) + # print postResponse.status_code + self.assertTrue( postResponse.status_code == codeForInvalid ) + + ########## Cross Testing: send data to wrong end point ############ + def test_05_boldDataToT1wEndPoint(self): + log= logging.getLogger( "SomeTest.testSomething" ) + + for fileName in glob(boldPattern): + with open(fileName) as fp: + inputData = json.load(fp) + # POST request + postResponse = requests.post(urlT1w, data = json.dumps(inputData), headers = header) + self.assertTrue( postResponse.status_code == codeForInvalid ) + + def test_06_T1wDataToBoldEndPoint(self): + log= logging.getLogger( "SomeTest.testSomething" ) + + for fileName in glob(T1wPattern): + with open(fileName) as fp: + inputData = json.load(fp) + # POST request + postResponse = requests.post(urlBold, data = json.dumps(inputData), headers = header) + self.assertTrue( postResponse.status_code == codeForInvalid ) + + def test_07_T1wDataValid(self): + + for fileName in glob(T1wPattern): + with open(fileName) as fp: + inputData = json.load(fp) + # 2. POST request + postResponse = requests.post(urlT1w, data = json.dumps(inputData), headers = header) + + # 3. GET request + queriedData = getRequest(postResponse, urlT1w) + # 4. validate input data and queried data + for key in inputData: + # check missing key + self.assertTrue(key in queriedData) + # check key-value pair match + self.assertTrue( inputData[key] == queriedData[key] ) + + + def test_08_boldDataValid(self): + + for fileName in glob(boldPattern): with open(fileName) as fp: inputData = json.load(fp) # 2. POST request - postResponse = requests.post(url, data = json.dumps(inputData), headers = header) + postResponse = requests.post(urlBold, data = json.dumps(inputData), headers = header) # 3. GET request - queriedData = getRequest(postResponse, url) - + queriedData = getRequest(postResponse, urlBold) # 4. validate input data and queried data for key in inputData: # check missing key @@ -88,6 +154,8 @@ def test_03_DataValid(self): self.assertTrue( inputData[key] == queriedData[key] ) +# **************** + if __name__ == '__main__': logging.basicConfig( stream=sys.stderr ) From d79cc250661f79edeb40cf5ca15949767fae08d8 Mon Sep 17 00:00:00 2001 From: fhuang Date: Fri, 19 May 2017 17:44:37 -0400 Subject: [PATCH 2/6] update with new setting --- dockereve-master/eve-app/settings.py | 355 +++++++++++++++++++++------ 1 file changed, 284 insertions(+), 71 deletions(-) diff --git a/dockereve-master/eve-app/settings.py b/dockereve-master/eve-app/settings.py index e06b8d0..58ae642 100644 --- a/dockereve-master/eve-app/settings.py +++ b/dockereve-master/eve-app/settings.py @@ -8,38 +8,63 @@ 'MONGO_DBNAME': 'scenarios', 'X_DOMAINS': '*', 'DOMAIN': { - 'scenarios': { - 'item_title': 'scenario', + 'bold': { + 'item_title': 'bold-2', 'resource_methods': ['GET', 'POST'], 'item_methods': ['GET', 'PATCH', 'PUT', 'DELETE'], 'schema': { - # 'title': { - # 'type': 'string', - # 'minlength': 1, - # 'maxlength': 100, - # 'required': True - # }, - 'cjv':{ + #if modality == bold, the fields below are required + 'modality': { + 'type': 'string', + 'required': True + }, + 'aor': { 'type': 'float', 'required': True }, - 'cnr':{ - 'type':'float', + 'aqi': { + 'type': 'float', 'required': True + }, - 'efc':{ - 'type':'float', + 'dvars_nstd': { + 'type': 'float', + 'required': True + + }, + 'dvars_std': { + 'type': 'float', + 'required': True + }, + 'dvars_vstd': { + 'type': 'float', + 'required': True + }, + 'efc': { + 'type': 'float', 'required': True }, 'fber': { 'type': 'float', 'required': True }, + 'fd_mean': { + 'type': 'float', + 'required': True + }, + 'fd_num': { + 'type': 'float', + 'required': True + }, + 'fd_perc': { + 'type': 'float', + 'required': True + }, 'fwhm_avg': { 'type': 'float', 'required': True }, - 'fwhm_x':{ + 'fwhm_x': { 'type': 'float', 'required': True }, @@ -51,27 +76,102 @@ 'type': 'float', 'required': True }, - 'icvs_csf': { + 'gcor': { 'type': 'float', 'required': True }, - 'icvs_gm': { + 'gsr_x': { 'type': 'float', 'required': True }, - 'icvs_wm': { + 'gsr_y': { 'type': 'float', 'required': True }, - 'inu_med': { + 'task_id': { + 'type': 'string', + 'required': True + }, + 'size_t': { 'type': 'float', 'required': True }, - 'inu_range': { + 'size_x': { + 'type': 'float', + 'required': True + }, + 'size_y': { + 'type': 'float', + 'required': True + }, + 'size_z': { + 'type': 'float', + 'required': True + }, + 'snr': { + 'type': 'float', + 'required': True + }, + 'spacing_tr': { + 'type': 'float', + 'required': True + }, + 'spacing_x': { + 'type': 'float', + 'required': True + }, + 'spacing_y': { + 'type': 'float', + 'required': True + }, + 'spacing_z': { + 'type': 'float', + 'required': True + }, + 'summary_bg_k': { + 'type': 'float', + 'required': True + }, + 'summary_bg_mean': { + 'type': 'float', + 'required': True + }, + 'summary_bg_p05': { + 'type': 'float', + 'required': True + }, + 'summary_bg_p95': { + 'type': 'float', + 'required': True + }, + 'summary_bg_stdv': { + 'type': 'float', + 'required': True + }, + 'summary_fg_k': { + 'type': 'float', + 'required': True + }, + 'summary_fg_mean': { + 'type': 'float', + 'required': True + }, + 'summary_fg_p05': { + 'type': 'float', + 'required': True + }, + 'summary_fg_p95': { + 'type': 'float', + 'required': True + }, + 'summary_fg_stdv': { + 'type': 'float', + 'required': True + }, + 'tsnr': { 'type': 'float', 'required': True }, - # optional data 'AccelNumReferenceLines': {'type': 'integer'}, 'AccelerationFactorPE': {'type': 'integer'}, 'AcquisitionMatrix': {'type': 'string'}, @@ -104,7 +204,101 @@ 'TotalScanTimeSec': {'type': 'integer'}, 'TransmitCoilName': {'type': 'string'}, 'VariableFlipAngleFlag': {'type': 'string'}, - # required data + + 'ContrastBolusIngredient': {'type': 'string'}, + 'Manufacturer': {'type': 'string'}, + 'HardcopyDeviceSoftwareVersion': {'type': 'string'}, + 'GradientSetType': {'type': 'string'}, + 'MRTransmitCoilSequence':{'type': 'string'}, + 'MatrixCoilMode': {'type': 'string'}, + 'CoilCombinationMethod': {'type': 'string'}, + 'PulseSequenceType': {'type': 'string'}, + 'PulseSequenceDetails': {'type': 'string'}, + 'NumberShots' :{'type': 'integer'}, + 'ParallelReductionFactorInPlane':{'type': 'float'}, + 'ParallelAcquisitionTechnique': {'type': 'string'}, + 'PartialFourier' :{'type': 'boolean'}, + 'PartialFourierDirection':{'type': 'string'}, + 'EffectiveEchoSpacing' :{'type': 'float'}, + 'TotalReadoutTime':{'type': 'float'}, + 'SliceEncodingDirection': {'type': 'string'}, + 'NumberOfVolumesDiscardedByScanner':{'type': 'float'}, + 'NumberOfVolumesDiscardedByUser':{'type': 'float'}, + 'DelayTime':{'type': 'float'}, + 'MultibandAccelerationFactor':{'type': 'float'}, + 'Instructions': {'type': 'string'}, + 'TaskDescription': {'type': 'string'}, + 'CogAtlasID' : {'type': 'string'}, + 'CogPOID': {'type': 'string'}, + 'InstitutionName': {'type': 'string'}, + 'InstitutionAddress': {'type': 'string'}, + 'ConversionSoftware': {'type': 'string'}, + 'ConversionSoftwareVersion': {'type': 'string'}, + } #end of schema + },#end of bold + 'T1w': { + 'item_title': 'T1w-', + 'resource_methods': ['GET', 'POST'], + 'item_methods': ['GET', 'PATCH', 'PUT', 'DELETE'], + 'schema': { + 'modality': { + 'type': 'string', + 'required': True + }, + #if modality == T1w, the fields below are required + 'cjv':{ + 'type': 'float', + 'required': True + }, + 'cnr':{ + 'type':'float', + 'required': True + }, + 'efc':{ + 'type':'float', + 'required': True + }, + 'fber': { + 'type': 'float', + 'required': True + + }, + 'fwhm_avg': { + 'type': 'float', + 'required': True + }, + 'fwhm_x':{ + 'type': 'float', + 'required': True + }, + 'fwhm_y': { + 'type': 'float', + 'required': True + }, + 'fwhm_z': { + 'type': 'float', + 'required': True + }, + 'icvs_csf': { + 'type': 'float', + 'required': True + }, + 'icvs_gm': { + 'type': 'float', + 'required': True + }, + 'icvs_wm': { + 'type': 'float', + 'required': True + }, + 'inu_med': { + 'type': 'float', + 'required': True + }, + 'inu_range': { + 'type': 'float', + 'required': True + }, 'md5sum': { 'type': 'string', 'required': True @@ -112,6 +306,7 @@ 'modality': { 'type': 'string', 'required': True + }, 'mriqc_pred': { 'type': 'integer', @@ -129,50 +324,6 @@ 'type': 'string', 'required': True }, - # 'metadata': { - # 'type' : 'dict', - # 'schema':{ - # 'AccelNumReferenceLines': {'type': 'integer'}, - # 'AccelerationFactorPE': {'type': 'integer'}, - # 'AcquisitionMatrix': {'type': 'string'}, - # 'DeviceSerialNumber': {'type': 'string'}, - # 'EchoTime': {'type': 'float'}, - # 'EchoTrainLength': {'type': 'integer'}, - # 'FlipAngle': {'type': 'integer'}, - # 'ImageType': {'type': 'string'}, - # 'ImagingFrequency': {'type': 'integer'}, - # 'InPlanePhaseEncodingDirection': {'type': 'string'}, - # 'InversionTime': {'type': 'float'}, - # 'MRAcquisitionType': {'type': 'string'}, - # 'MagneticFieldStrength': {'type': 'integer'}, - # 'ManufacturerModelName': {'type': 'string'}, - # 'NumberOfAverages': {'type': 'integer'}, - # 'NumberOfPhaseEncodingSteps': {'type': 'integer'}, - # 'PatientPosition': {'type': 'string'}, - # 'PercentPhaseFieldOfView': {'type': 'integer'}, - # 'PercentSampling': {'type': 'integer'}, - # 'PhaseEncodingDirection': {'type': 'string'}, - # 'PixelBandwidth': {'type': 'integer'}, - # 'ProtocolName': {'type': 'string'}, - # 'ReceiveCoilName': {'type': 'string'}, - # 'RepetitionTime': {'type': 'float'}, - # 'ScanOptions': {'type': 'string'}, - # 'ScanningSequence': {'type': 'string'}, - # 'SequenceName': {'type': 'string'}, - # 'SequenceVariant': {'type': 'string'}, - # 'SoftwareVersions': {'type': 'string'}, - # 'TotalScanTimeSec': {'type': 'integer'}, - # 'TransmitCoilName': {'type': 'string'}, - # 'VariableFlipAngleFlag': {'type': 'string'}, - - # 'md5sum': {'type': 'string'}, - # 'modality': {'type': 'string'}, - # 'mriqc_pred': {'type': 'integer'}, - # 'software': {'type': 'string'}, - # 'subject_id': {'type': 'string'}, - # 'version': {'type': 'string'} - # }, - # }, 'qi_1': { 'type': 'float', 'required': True @@ -251,7 +402,7 @@ }, 'summary_bg_k': { 'type': 'float', - 'required': True + 'required': True }, 'summary_bg_mean': { 'type': 'float', @@ -291,7 +442,7 @@ }, 'summary_gm_k': { 'type': 'float', - 'required': True + 'required': True }, 'summary_gm_mean': { 'type': 'float', @@ -345,8 +496,70 @@ 'type': 'float', 'required': True }, - } - } - } -} + 'AccelNumReferenceLines': {'type': 'integer'}, + 'AccelerationFactorPE': {'type': 'integer'}, + 'AcquisitionMatrix': {'type': 'string'}, + 'DeviceSerialNumber': {'type': 'string'}, + 'EchoTime': {'type': 'float'}, + 'EchoTrainLength': {'type': 'integer'}, + 'FlipAngle': {'type': 'integer'}, + 'ImageType': {'type': 'string'}, + 'ImagingFrequency': {'type': 'integer'}, + 'InPlanePhaseEncodingDirection': {'type': 'string'}, + 'InversionTime': {'type': 'float'}, + 'MRAcquisitionType': {'type': 'string'}, + 'MagneticFieldStrength': {'type': 'integer'}, + 'ManufacturerModelName': {'type': 'string'}, + 'NumberOfAverages': {'type': 'integer'}, + 'NumberOfPhaseEncodingSteps': {'type': 'integer'}, + 'PatientPosition': {'type': 'string'}, + 'PercentPhaseFieldOfView': {'type': 'integer'}, + 'PercentSampling': {'type': 'integer'}, + 'PhaseEncodingDirection': {'type': 'string'}, + 'PixelBandwidth': {'type': 'integer'}, + 'ProtocolName': {'type': 'string'}, + 'ReceiveCoilName': {'type': 'string'}, + 'RepetitionTime': {'type': 'float'}, + 'ScanOptions': {'type': 'string'}, + 'ScanningSequence': {'type': 'string'}, + 'SequenceName': {'type': 'string'}, + 'SequenceVariant': {'type': 'string'}, + 'SoftwareVersions': {'type': 'string'}, + 'TotalScanTimeSec': {'type': 'integer'}, + 'TransmitCoilName': {'type': 'string'}, + 'VariableFlipAngleFlag': {'type': 'string'}, + 'ContrastBolusIngredient': {'type': 'string'}, + 'Manufacturer': {'type': 'string'}, + 'HardcopyDeviceSoftwareVersion': {'type': 'string'}, + 'GradientSetType': {'type': 'string'}, + 'MRTransmitCoilSequence':{'type': 'string'}, + 'MatrixCoilMode': {'type': 'string'}, + 'CoilCombinationMethod': {'type': 'string'}, + 'PulseSequenceType': {'type': 'string'}, + 'PulseSequenceDetails': {'type': 'string'}, + 'NumberShots' :{'type': 'integer'}, + 'ParallelReductionFactorInPlane':{'type': 'float'}, + 'ParallelAcquisitionTechnique': {'type': 'string'}, + 'PartialFourier' :{'type': 'boolean'}, + 'PartialFourierDirection':{'type': 'string'}, + 'EffectiveEchoSpacing' :{'type': 'float'}, + 'TotalReadoutTime':{'type': 'float'}, + 'SliceEncodingDirection': {'type': 'string'}, + 'NumberOfVolumesDiscardedByScanner':{'type': 'float'}, + 'NumberOfVolumesDiscardedByUser':{'type': 'float'}, + 'DelayTime':{'type': 'float'}, + 'MultibandAccelerationFactor':{'type': 'float'}, + 'Instructions': {'type': 'string'}, + 'TaskDescription': {'type': 'string'}, + 'CogAtlasID' : {'type': 'string'}, + 'CogPOID': {'type': 'string'}, + 'InstitutionName': {'type': 'string'}, + 'InstitutionAddress': {'type': 'string'}, + 'ConversionSoftware': {'type': 'string'}, + 'ConversionSoftwareVersion': {'type': 'string'}, + }#end of schema + } # end of T1w + + } +} \ No newline at end of file From 90ed2a632fb5d52fbdf368475ea18ca8fa111fe5 Mon Sep 17 00:00:00 2001 From: fhuang Date: Fri, 19 May 2017 17:50:20 -0400 Subject: [PATCH 3/6] update bold data --- test/bold/missingField/image_bold.json | 40 +++++++++++++++++++++++++ test/bold/validData/image_bold.json | 41 ++++++++++++++++++++++++++ 2 files changed, 81 insertions(+) create mode 100755 test/bold/missingField/image_bold.json create mode 100755 test/bold/validData/image_bold.json diff --git a/test/bold/missingField/image_bold.json b/test/bold/missingField/image_bold.json new file mode 100755 index 0000000..ae5e3f7 --- /dev/null +++ b/test/bold/missingField/image_bold.json @@ -0,0 +1,40 @@ +{ + "modality" : "bold", + "aqi": 0.0005224403999999999, + "dvars_nstd": 10.191722418947368, + "dvars_std": 1.0800233642105264, + "dvars_vstd": 1.6403423489473683, + "efc": 0.5638485423014671, + "fber": 958.6884765625, + "fd_mean": 0.16413075091049215, + "fd_num": 4, + "fd_perc": 20, + "fwhm_avg": 40.5562, + "fwhm_x": 37.569, + "fwhm_y": 43.0101, + "fwhm_z": 41.283, + "gcor": 0.2162099838256836, + "gsr_x": -0.004743137396872044, + "gsr_y": 0.02154964953660965, + "task_id": "rhymejudgment", + "size_t": 20, + "size_x": 16, + "size_y": 16, + "size_z": 9, + "snr": 1.1260140530360272, + "spacing_tr": 2, + "spacing_x": 12.5, + "spacing_y": 12.5, + "spacing_z": 16, + "summary_bg_k": 10.199746320897564, + "summary_bg_mean": 10.67599868774414, + "summary_bg_p05": 3.4488043785095215, + "summary_bg_p95": 21.972539520263666, + "summary_bg_stdv": 5.769111156463623, + "summary_fg_k": -1.6145134278870812, + "summary_fg_mean": 290.6355895996094, + "summary_fg_p05": 13.376275062561035, + "summary_fg_p95": 631.4849853515625, + "summary_fg_stdv": 238.1324462890625, + "tsnr": 108.249267578125 +} \ No newline at end of file diff --git a/test/bold/validData/image_bold.json b/test/bold/validData/image_bold.json new file mode 100755 index 0000000..afe6683 --- /dev/null +++ b/test/bold/validData/image_bold.json @@ -0,0 +1,41 @@ +{ + "modality" : "bold", + "aor": 0.034428499999999994, + "aqi": 0.0005224403999999999, + "dvars_nstd": 10.191722418947368, + "dvars_std": 1.0800233642105264, + "dvars_vstd": 1.6403423489473683, + "efc": 0.5638485423014671, + "fber": 958.6884765625, + "fd_mean": 0.16413075091049215, + "fd_num": 4, + "fd_perc": 20, + "fwhm_avg": 40.5562, + "fwhm_x": 37.569, + "fwhm_y": 43.0101, + "fwhm_z": 41.283, + "gcor": 0.2162099838256836, + "gsr_x": -0.004743137396872044, + "gsr_y": 0.02154964953660965, + "task_id": "rhymejudgment", + "size_t": 20, + "size_x": 16, + "size_y": 16, + "size_z": 9, + "snr": 1.1260140530360272, + "spacing_tr": 2, + "spacing_x": 12.5, + "spacing_y": 12.5, + "spacing_z": 16, + "summary_bg_k": 10.199746320897564, + "summary_bg_mean": 10.67599868774414, + "summary_bg_p05": 3.4488043785095215, + "summary_bg_p95": 21.972539520263666, + "summary_bg_stdv": 5.769111156463623, + "summary_fg_k": -1.6145134278870812, + "summary_fg_mean": 290.6355895996094, + "summary_fg_p05": 13.376275062561035, + "summary_fg_p95": 631.4849853515625, + "summary_fg_stdv": 238.1324462890625, + "tsnr": 108.249267578125 +} \ No newline at end of file From a32db6296ef9705df70a63c2def381e6fcc0cf31 Mon Sep 17 00:00:00 2001 From: fhuang Date: Fri, 19 May 2017 17:50:48 -0400 Subject: [PATCH 4/6] update T1w data --- test/T1w/missingField/sub-10159_T1w.json | 95 +++++++++++++++++++++++ test/T1w/validData/sub-10159_T1w.json | 96 ++++++++++++++++++++++++ test/T1w/validData/sub-10171_T1w.json | 96 ++++++++++++++++++++++++ test/T1w/validData/sub-10189_T1w.json | 96 ++++++++++++++++++++++++ test/T1w/validData/sub-10193_T1w.json | 96 ++++++++++++++++++++++++ test/T1w/validData/sub-10206_T1w.json | 96 ++++++++++++++++++++++++ test/T1w/validData/sub-10217_T1w.json | 96 ++++++++++++++++++++++++ test/T1w/validData/sub-10225_T1w.json | 96 ++++++++++++++++++++++++ test/T1w/validData/sub-10227_T1w.json | 96 ++++++++++++++++++++++++ test/T1w/validData/sub-10228_T1w.json | 96 ++++++++++++++++++++++++ test/T1w/validData/sub-10235_T1w.json | 96 ++++++++++++++++++++++++ test/T1w/validData/sub-10249_T1w.json | 96 ++++++++++++++++++++++++ test/T1w/validData/sub-10269_T1w.json | 96 ++++++++++++++++++++++++ test/T1w/validData/sub-10271_T1w.json | 96 ++++++++++++++++++++++++ test/T1w/validData/sub-10273_T1w.json | 96 ++++++++++++++++++++++++ test/T1w/validData/sub-10274_T1w.json | 96 ++++++++++++++++++++++++ test/T1w/validData/sub-10280_T1w.json | 96 ++++++++++++++++++++++++ test/T1w/validData/sub-10290_T1w.json | 96 ++++++++++++++++++++++++ test/T1w/validData/sub-10292_T1w.json | 96 ++++++++++++++++++++++++ test/T1w/validData/sub-10304_T1w.json | 96 ++++++++++++++++++++++++ test/T1w/validData/sub-10316_T1w.json | 96 ++++++++++++++++++++++++ test/T1w/validData/sub-10321_T1w.json | 96 ++++++++++++++++++++++++ test/T1w/validData/sub-10325_T1w.json | 96 ++++++++++++++++++++++++ test/T1w/validData/sub-10329_T1w.json | 96 ++++++++++++++++++++++++ test/T1w/validData/sub-10339_T1w.json | 96 ++++++++++++++++++++++++ test/T1w/validData/sub-10340_T1w.json | 96 ++++++++++++++++++++++++ test/T1w/validData/sub-10345_T1w.json | 96 ++++++++++++++++++++++++ test/T1w/validData/sub-10347_T1w.json | 96 ++++++++++++++++++++++++ test/T1w/validData/sub-10356_T1w.json | 96 ++++++++++++++++++++++++ test/T1w/validData/sub-10361_T1w.json | 96 ++++++++++++++++++++++++ test/T1w/validData/sub-10365_T1w.json | 96 ++++++++++++++++++++++++ test/T1w/validData/sub-10376_T1w.json | 96 ++++++++++++++++++++++++ test/T1w/validData/sub-10377_T1w.json | 96 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a/test/T1w/validData/sub-10189_T1w.json b/test/T1w/validData/sub-10189_T1w.json new file mode 100755 index 0000000..26e593c --- /dev/null +++ b/test/T1w/validData/sub-10189_T1w.json @@ -0,0 +1,96 @@ +{ + "snr_wm": 14.983180094093838, + "summary_bg_p95": 12.0, + "InversionTime": 1.1, + "fber": 20.806243896484375, + "DeviceSerialNumber": "35343", + "snrd_csf": 17.03981125611365, + "InPlanePhaseEncodingDirection": "ROW", + "summary_csf_stdv": 41.77383041381836, + "snrd_gm": 38.4512877901014, + "size_x": 176, + "size_y": 256, + "size_z": 256, + "AcquisitionMatrix": "0/256/256/0", + "ProtocolName": "MPRAGE - BWM", + "summary_csf_p05": 44.0, + "icvs_wm": 0.4137933405122368, + "RepetitionTime": 2.53, + "summary_wm_stdv": 41.74563217163086, + "snrd_wm": 55.20427248166352, + "MagneticFieldStrength": 3, + "TotalScanTimeSec": 363, + "MRAcquisitionType": "3D", + "snr_total": 8.440435733961932, + "icvs_gm": 0.41151287749321674, + "summary_gm_mean": 210.28079223632812, + "rpve_csf": 78351.65625, + 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a/test/T1w/validData/sub-10329_T1w.json b/test/T1w/validData/sub-10329_T1w.json new file mode 100755 index 0000000..8ce57ef --- /dev/null +++ b/test/T1w/validData/sub-10329_T1w.json @@ -0,0 +1,96 @@ +{ + "snr_wm": 14.46129670151479, + "summary_bg_p95": 14.0, + "InversionTime": 1.1, + "fber": 25.52779769897461, + "DeviceSerialNumber": "35343", + "snrd_csf": 20.45915931747565, + "InPlanePhaseEncodingDirection": "ROW", + "summary_csf_stdv": 38.01711654663086, + "snrd_gm": 30.838549842668687, + "size_x": 176, + "size_y": 256, + "size_z": 256, + "AcquisitionMatrix": "0/256/256/0", + "ProtocolName": "MPRAGE - BWM", + "summary_csf_p05": 69.0, + "icvs_wm": 0.39507614099764043, + "RepetitionTime": 2.53, + "summary_wm_stdv": 44.65134048461914, + "snrd_wm": 44.15224735039028, + "MagneticFieldStrength": 3, + "TotalScanTimeSec": 363, + "MRAcquisitionType": "3D", + "snr_total": 8.572240634104238, + "icvs_gm": 0.41952929525440064, + "summary_gm_mean": 227.21774291992188, + "rpve_csf": 90247.421875, + 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at end of file diff --git a/test/T1w/validData/sub-10448_T1w.json b/test/T1w/validData/sub-10448_T1w.json new file mode 100755 index 0000000..6c6256d --- /dev/null +++ b/test/T1w/validData/sub-10448_T1w.json @@ -0,0 +1,96 @@ +{ + "snr_wm": 15.970049856955054, + "summary_bg_p95": 13.0, + "InversionTime": 1.1, + "fber": 26.804691314697266, + "DeviceSerialNumber": "35343", + "snrd_csf": 21.005614463962726, + "InPlanePhaseEncodingDirection": "ROW", + "summary_csf_stdv": 38.76427459716797, + "snrd_gm": 35.32472320562997, + "size_x": 176, + "size_y": 256, + "size_z": 256, + "AcquisitionMatrix": "0/256/256/0", + "ProtocolName": "MPRAGE - BWM", + "summary_csf_p05": 58.0, + "icvs_wm": 0.40319067029740663, + "RepetitionTime": 2.53, + "summary_wm_stdv": 41.59878158569336, + "snrd_wm": 51.340670603808384, + "MagneticFieldStrength": 3, + "TotalScanTimeSec": 363, + "MRAcquisitionType": "3D", + "snr_total": 9.01985091999203, + "icvs_gm": 0.4072784610914128, + "summary_gm_mean": 219.0160675048828, + 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a/test/T1w/validData/sub-10506_T1w.json b/test/T1w/validData/sub-10506_T1w.json new file mode 100755 index 0000000..3ae56c4 --- /dev/null +++ b/test/T1w/validData/sub-10506_T1w.json @@ -0,0 +1,96 @@ +{ + "snr_wm": 14.457360055853016, + "summary_bg_p95": 11.0, + "InversionTime": 1.1, + "fber": 16.233591079711914, + "DeviceSerialNumber": "35343", + "snrd_csf": 19.55853809339588, + "InPlanePhaseEncodingDirection": "ROW", + "summary_csf_stdv": 34.0872688293457, + "snrd_gm": 38.48990929969664, + "size_x": 176, + "size_y": 256, + "size_z": 256, + "AcquisitionMatrix": "0/256/256/0", + "ProtocolName": "MPRAGE - BWM", + "summary_csf_p05": 50.0, + "icvs_wm": 0.380744804026898, + "RepetitionTime": 2.53, + "summary_wm_stdv": 34.543312072753906, + "snrd_wm": 54.93760019024074, + "MagneticFieldStrength": 3, + "TotalScanTimeSec": 363, + "MRAcquisitionType": "3D", + "snr_total": 8.637248600111286, + "icvs_gm": 0.4268106007388781, + "summary_gm_mean": 194.89056396484375, + "rpve_csf": 92911.7734375, + 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newline at end of file diff --git a/test/T1w/validData/sub-10565_T1w.json b/test/T1w/validData/sub-10565_T1w.json new file mode 100755 index 0000000..b57556c --- /dev/null +++ b/test/T1w/validData/sub-10565_T1w.json @@ -0,0 +1,96 @@ +{ + "snr_wm": 13.246487670930497, + "summary_bg_p95": 12.0, + "InversionTime": 1.1, + "fber": 36.65162658691406, + "DeviceSerialNumber": "35343", + "snrd_csf": 21.644374762653317, + "InPlanePhaseEncodingDirection": "ROW", + "summary_csf_stdv": 42.93138885498047, + "snrd_gm": 37.32942262871286, + "size_x": 176, + "size_y": 256, + "size_z": 256, + "AcquisitionMatrix": "0/256/256/0", + "ProtocolName": "MPRAGE - BWM", + "summary_csf_p05": 55.0, + "icvs_wm": 0.3579669601001974, + "RepetitionTime": 2.53, + "summary_wm_stdv": 39.97295379638672, + "snrd_wm": 53.49891017216792, + "MagneticFieldStrength": 3, + "TotalScanTimeSec": 363, + "MRAcquisitionType": "3D", + "snr_total": 8.05873084634429, + "icvs_gm": 0.46214375709589717, + "summary_gm_mean": 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a/test/T1w/validData/sub-10668_T1w.json b/test/T1w/validData/sub-10668_T1w.json new file mode 100755 index 0000000..792e649 --- /dev/null +++ b/test/T1w/validData/sub-10668_T1w.json @@ -0,0 +1,96 @@ +{ + "snr_wm": 16.083947008124348, + "summary_bg_p95": 13.0, + "InversionTime": 1.1, + "fber": 42.13322067260742, + "DeviceSerialNumber": "35343", + "snrd_csf": 19.81483804689281, + "InPlanePhaseEncodingDirection": "ROW", + "summary_csf_stdv": 44.822364807128906, + "snrd_gm": 38.429181870411384, + "size_x": 176, + "size_y": 256, + "size_z": 256, + "AcquisitionMatrix": "0/256/256/0", + "ProtocolName": "MPRAGE - BWM", + "summary_csf_p05": 61.0, + "icvs_wm": 0.3854450652716107, + "RepetitionTime": 2.53, + "summary_wm_stdv": 41.0584602355957, + "snrd_wm": 55.49715603785491, + "MagneticFieldStrength": 3, + "TotalScanTimeSec": 363, + "MRAcquisitionType": "3D", + "snr_total": 8.991814143978784, + "icvs_gm": 0.43805075863134624, + "summary_gm_mean": 246.0537872314453, + "rpve_csf": 82328.390625, + 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b/test/derivatives/sub-10189_T1w.json deleted file mode 100755 index 26e593c..0000000 --- a/test/derivatives/sub-10189_T1w.json +++ /dev/null @@ -1,96 +0,0 @@ -{ - "snr_wm": 14.983180094093838, - "summary_bg_p95": 12.0, - "InversionTime": 1.1, - "fber": 20.806243896484375, - "DeviceSerialNumber": "35343", - "snrd_csf": 17.03981125611365, - "InPlanePhaseEncodingDirection": "ROW", - "summary_csf_stdv": 41.77383041381836, - "snrd_gm": 38.4512877901014, - "size_x": 176, - "size_y": 256, - "size_z": 256, - "AcquisitionMatrix": "0/256/256/0", - "ProtocolName": "MPRAGE - BWM", - "summary_csf_p05": 44.0, - "icvs_wm": 0.4137933405122368, - "RepetitionTime": 2.53, - "summary_wm_stdv": 41.74563217163086, - "snrd_wm": 55.20427248166352, - "MagneticFieldStrength": 3, - "TotalScanTimeSec": 363, - "MRAcquisitionType": "3D", - "snr_total": 8.440435733961932, - "icvs_gm": 0.41151287749321674, - "summary_gm_mean": 210.28079223632812, - "rpve_csf": 78351.65625, - "tpm_overlap_wm": 0.6125167608261108, - 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newline at end of file diff --git a/test/derivatives/sub-10235_T1w.json b/test/derivatives/sub-10235_T1w.json deleted file mode 100755 index 82ca28f..0000000 --- a/test/derivatives/sub-10235_T1w.json +++ /dev/null @@ -1,96 +0,0 @@ -{ - "snr_wm": 14.423135300538853, - "summary_bg_p95": 14.0, - "InversionTime": 1.1, - "fber": 33.06489944458008, - "DeviceSerialNumber": "35343", - "snrd_csf": 18.449157530955482, - "InPlanePhaseEncodingDirection": "ROW", - "summary_csf_stdv": 35.20117950439453, - "snrd_gm": 29.509399969722036, - "size_x": 176, - "size_y": 256, - "size_z": 256, - "AcquisitionMatrix": "0/256/256/0", - "ProtocolName": "MPRAGE - BWM", - "summary_csf_p05": 64.0, - "icvs_wm": 0.3829863726265554, - "RepetitionTime": 2.53, - "summary_wm_stdv": 33.826332092285156, - "snrd_wm": 41.75707238686777, - "MagneticFieldStrength": 3, - "TotalScanTimeSec": 363, - "MRAcquisitionType": "3D", - "snr_total": 8.771616570452677, - "icvs_gm": 0.41739865440054286, - "summary_gm_mean": 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b/test/derivatives/sub-10280_T1w.json deleted file mode 100755 index 1cc668f..0000000 --- a/test/derivatives/sub-10280_T1w.json +++ /dev/null @@ -1,96 +0,0 @@ -{ - "snr_wm": 11.515639570447458, - "summary_bg_p95": 14.0, - "InversionTime": 1.1, - "fber": 23.079416275024414, - "DeviceSerialNumber": "35343", - "snrd_csf": 13.9377791762724, - "InPlanePhaseEncodingDirection": "ROW", - "summary_csf_stdv": 33.62678527832031, - "snrd_gm": 26.433265710299747, - "size_x": 176, - "size_y": 256, - "size_z": 256, - "AcquisitionMatrix": "0/256/256/0", - "ProtocolName": "MPRAGE - BWM", - "summary_csf_p05": 50.0, - "icvs_wm": 0.3820060614193818, - "RepetitionTime": 2.53, - "summary_wm_stdv": 38.73092269897461, - "snrd_wm": 36.99092018070716, - "MagneticFieldStrength": 3, - "TotalScanTimeSec": 363, - "MRAcquisitionType": "3D", - "snr_total": 7.161729062051321, - "icvs_gm": 0.43047937378491014, - "summary_gm_mean": 191.06301879882812, - "rpve_csf": 100211.2109375, - "tpm_overlap_wm": 0.5769792199134827, 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a/test/derivatives/sub-10325_T1w.json +++ /dev/null @@ -1,96 +0,0 @@ -{ - "snr_wm": 15.146413245566588, - "summary_bg_p95": 15.0, - "InversionTime": 1.1, - "fber": 22.09543228149414, - "DeviceSerialNumber": "35343", - "snrd_csf": 20.844716964729244, - "InPlanePhaseEncodingDirection": "ROW", - "summary_csf_stdv": 47.59424591064453, - "snrd_gm": 36.80698703751728, - "size_x": 176, - "size_y": 256, - "size_z": 256, - "AcquisitionMatrix": "0/256/256/0", - "ProtocolName": "MPRAGE - BWM", - "summary_csf_p05": 71.0, - "icvs_wm": 0.37699514170013265, - "RepetitionTime": 2.53, - "summary_wm_stdv": 45.701595306396484, - "snrd_wm": 51.584813918039465, - "MagneticFieldStrength": 3, - "TotalScanTimeSec": 363, - "MRAcquisitionType": "3D", - "snr_total": 8.984537381095429, - "icvs_gm": 0.4391847145576554, - "summary_gm_mean": 268.3059997558594, - "rpve_csf": 72141.7109375, - "tpm_overlap_wm": 0.5986453294754028, - "snrd_total": 36.41217264009533, - "PixelBandwidth": 200, - "ScanningSequence": 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--git a/test/derivatives/sub-10329_T1w.json b/test/derivatives/sub-10329_T1w.json deleted file mode 100755 index 8ce57ef..0000000 --- a/test/derivatives/sub-10329_T1w.json +++ /dev/null @@ -1,96 +0,0 @@ -{ - "snr_wm": 14.46129670151479, - "summary_bg_p95": 14.0, - "InversionTime": 1.1, - "fber": 25.52779769897461, - "DeviceSerialNumber": "35343", - "snrd_csf": 20.45915931747565, - "InPlanePhaseEncodingDirection": "ROW", - "summary_csf_stdv": 38.01711654663086, - "snrd_gm": 30.838549842668687, - "size_x": 176, - "size_y": 256, - "size_z": 256, - "AcquisitionMatrix": "0/256/256/0", - "ProtocolName": "MPRAGE - BWM", - "summary_csf_p05": 69.0, - "icvs_wm": 0.39507614099764043, - "RepetitionTime": 2.53, - "summary_wm_stdv": 44.65134048461914, - "snrd_wm": 44.15224735039028, - "MagneticFieldStrength": 3, - "TotalScanTimeSec": 363, - "MRAcquisitionType": "3D", - "snr_total": 8.572240634104238, - "icvs_gm": 0.41952929525440064, - "summary_gm_mean": 227.21774291992188, - "rpve_csf": 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--git a/test/derivatives/sub-10365_T1w.json b/test/derivatives/sub-10365_T1w.json deleted file mode 100755 index 029dfb6..0000000 --- a/test/derivatives/sub-10365_T1w.json +++ /dev/null @@ -1,96 +0,0 @@ -{ - "snr_wm": 14.020704769627178, - "summary_bg_p95": 19.0, - "InversionTime": 1.1, - "fber": 25.02277946472168, - "DeviceSerialNumber": "35343", - "snrd_csf": 23.94987051939512, - "InPlanePhaseEncodingDirection": "ROW", - "summary_csf_stdv": 49.05360794067383, - "snrd_gm": 37.31383204772731, - "size_x": 176, - "size_y": 256, - "size_z": 256, - "AcquisitionMatrix": "0/256/256/0", - "ProtocolName": "MPRAGE - BWM", - "summary_csf_p05": 93.0, - "icvs_wm": 0.38085783079779045, - "RepetitionTime": 2.53, - "summary_wm_stdv": 48.243896484375, - "snrd_wm": 52.56542629436287, - "MagneticFieldStrength": 3, - "TotalScanTimeSec": 363, - "MRAcquisitionType": "3D", - "snr_total": 8.613881402740219, - "icvs_gm": 0.4149875997985294, - "summary_gm_mean": 291.9226379394531, - "rpve_csf": 87981.2890625, 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a/test/derivatives/sub-10440_T1w.json +++ /dev/null @@ -1,96 +0,0 @@ -{ - "snr_wm": 15.757969247665276, - "summary_bg_p95": 13.0, - "InversionTime": 1.1, - "fber": 31.54927635192871, - "DeviceSerialNumber": "35343", - "snrd_csf": 25.446808380870706, - "InPlanePhaseEncodingDirection": "ROW", - "summary_csf_stdv": 44.23995590209961, - "snrd_gm": 43.92983201440872, - "size_x": 176, - "size_y": 256, - "size_z": 256, - "AcquisitionMatrix": "0/256/256/0", - "ProtocolName": "MPRAGE - BWM", - "summary_csf_p05": 68.0, - "icvs_wm": 0.388695990879484, - "RepetitionTime": 2.53, - "summary_wm_stdv": 43.19438934326172, - "snrd_wm": 61.318078985123464, - "MagneticFieldStrength": 3, - "TotalScanTimeSec": 363, - "MRAcquisitionType": "3D", - "snr_total": 8.970654478968262, - "icvs_gm": 0.39690032807545533, - "summary_gm_mean": 259.1094665527344, - "rpve_csf": 81454.40625, - "tpm_overlap_wm": 0.6231102347373962, - "snrd_total": 43.564906460134296, - "PixelBandwidth": 200, - "ScanningSequence": "GR/IR", - 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a/test/derivatives/sub-10448_T1w.json b/test/derivatives/sub-10448_T1w.json deleted file mode 100755 index 6c6256d..0000000 --- a/test/derivatives/sub-10448_T1w.json +++ /dev/null @@ -1,96 +0,0 @@ -{ - "snr_wm": 15.970049856955054, - "summary_bg_p95": 13.0, - "InversionTime": 1.1, - "fber": 26.804691314697266, - "DeviceSerialNumber": "35343", - "snrd_csf": 21.005614463962726, - "InPlanePhaseEncodingDirection": "ROW", - "summary_csf_stdv": 38.76427459716797, - "snrd_gm": 35.32472320562997, - "size_x": 176, - "size_y": 256, - "size_z": 256, - "AcquisitionMatrix": "0/256/256/0", - "ProtocolName": "MPRAGE - BWM", - "summary_csf_p05": 58.0, - "icvs_wm": 0.40319067029740663, - "RepetitionTime": 2.53, - "summary_wm_stdv": 41.59878158569336, - "snrd_wm": 51.340670603808384, - "MagneticFieldStrength": 3, - "TotalScanTimeSec": 363, - "MRAcquisitionType": "3D", - "snr_total": 9.01985091999203, - "icvs_gm": 0.4072784610914128, - "summary_gm_mean": 219.0160675048828, - "rpve_csf": 82188.453125, - 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index 2706bca..0000000 --- a/test/derivatives/sub-10492_T1w.json +++ /dev/null @@ -1,96 +0,0 @@ -{ - "snr_wm": 14.24753139853682, - "summary_bg_p95": 13.0, - "InversionTime": 1.1, - "fber": 31.798019409179688, - "DeviceSerialNumber": "35343", - "snrd_csf": 23.91902850411584, - "InPlanePhaseEncodingDirection": "ROW", - "summary_csf_stdv": 38.929588317871094, - "snrd_gm": 37.40212338780293, - "size_x": 176, - "size_y": 256, - "size_z": 256, - "AcquisitionMatrix": "0/256/256/0", - "ProtocolName": "MPRAGE - BWM", - "summary_csf_p05": 72.0, - "icvs_wm": 0.3740096251310937, - "RepetitionTime": 2.53, - "summary_wm_stdv": 37.58262252807617, - "snrd_wm": 52.31786305858459, - "MagneticFieldStrength": 3, - "TotalScanTimeSec": 363, - "MRAcquisitionType": "3D", - "snr_total": 8.771754946223632, - "icvs_gm": 0.43380383816730383, - "summary_gm_mean": 236.17428588867188, - "rpve_csf": 80861.0625, - "tpm_overlap_wm": 0.5944159626960754, - "snrd_total": 37.879671650167786, - "PixelBandwidth": 200, - 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a/test/derivatives/sub-10506_T1w.json b/test/derivatives/sub-10506_T1w.json deleted file mode 100755 index 3ae56c4..0000000 --- a/test/derivatives/sub-10506_T1w.json +++ /dev/null @@ -1,96 +0,0 @@ -{ - "snr_wm": 14.457360055853016, - "summary_bg_p95": 11.0, - "InversionTime": 1.1, - "fber": 16.233591079711914, - "DeviceSerialNumber": "35343", - "snrd_csf": 19.55853809339588, - "InPlanePhaseEncodingDirection": "ROW", - "summary_csf_stdv": 34.0872688293457, - "snrd_gm": 38.48990929969664, - "size_x": 176, - "size_y": 256, - "size_z": 256, - "AcquisitionMatrix": "0/256/256/0", - "ProtocolName": "MPRAGE - BWM", - "summary_csf_p05": 50.0, - "icvs_wm": 0.380744804026898, - "RepetitionTime": 2.53, - "summary_wm_stdv": 34.543312072753906, - "snrd_wm": 54.93760019024074, - "MagneticFieldStrength": 3, - "TotalScanTimeSec": 363, - "MRAcquisitionType": "3D", - "snr_total": 8.637248600111286, - "icvs_gm": 0.4268106007388781, - "summary_gm_mean": 194.89056396484375, - "rpve_csf": 92911.7734375, - 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95263fb..0000000 --- a/test/derivatives/sub-10557_T1w.json +++ /dev/null @@ -1,96 +0,0 @@ -{ - "snr_wm": 13.135120190426582, - "summary_bg_p95": 11.0, - "InversionTime": 1.1, - "fber": 27.782163619995117, - "DeviceSerialNumber": "35343", - "snrd_csf": 20.92370145092902, - "InPlanePhaseEncodingDirection": "ROW", - "summary_csf_stdv": 38.16643142700195, - "snrd_gm": 36.67154238262409, - "size_x": 176, - "size_y": 256, - "size_z": 256, - "AcquisitionMatrix": "0/256/256/0", - "ProtocolName": "MPRAGE - BWM", - "summary_csf_p05": 54.0, - "icvs_wm": 0.3734417824689293, - "RepetitionTime": 2.53, - "summary_wm_stdv": 39.28329086303711, - "snrd_wm": 52.080016155216576, - "MagneticFieldStrength": 3, - "TotalScanTimeSec": 363, - "MRAcquisitionType": "3D", - "snr_total": 7.862055759349549, - "icvs_gm": 0.44506817265972876, - "summary_gm_mean": 211.9989471435547, - "rpve_csf": 94646.6640625, - "tpm_overlap_wm": 0.5912413597106934, - "snrd_total": 36.55841999625656, - "PixelBandwidth": 200, - 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end of file diff --git a/test/derivatives/sub-10565_T1w.json b/test/derivatives/sub-10565_T1w.json deleted file mode 100755 index b57556c..0000000 --- a/test/derivatives/sub-10565_T1w.json +++ /dev/null @@ -1,96 +0,0 @@ -{ - "snr_wm": 13.246487670930497, - "summary_bg_p95": 12.0, - "InversionTime": 1.1, - "fber": 36.65162658691406, - "DeviceSerialNumber": "35343", - "snrd_csf": 21.644374762653317, - "InPlanePhaseEncodingDirection": "ROW", - "summary_csf_stdv": 42.93138885498047, - "snrd_gm": 37.32942262871286, - "size_x": 176, - "size_y": 256, - "size_z": 256, - "AcquisitionMatrix": "0/256/256/0", - "ProtocolName": "MPRAGE - BWM", - "summary_csf_p05": 55.0, - "icvs_wm": 0.3579669601001974, - "RepetitionTime": 2.53, - "summary_wm_stdv": 39.97295379638672, - "snrd_wm": 53.49891017216792, - "MagneticFieldStrength": 3, - "TotalScanTimeSec": 363, - "MRAcquisitionType": "3D", - "snr_total": 8.05873084634429, - "icvs_gm": 0.46214375709589717, - "summary_gm_mean": 224.48036193847656, - 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index 792e649..0000000 --- a/test/derivatives/sub-10668_T1w.json +++ /dev/null @@ -1,96 +0,0 @@ -{ - "snr_wm": 16.083947008124348, - "summary_bg_p95": 13.0, - "InversionTime": 1.1, - "fber": 42.13322067260742, - "DeviceSerialNumber": "35343", - "snrd_csf": 19.81483804689281, - "InPlanePhaseEncodingDirection": "ROW", - "summary_csf_stdv": 44.822364807128906, - "snrd_gm": 38.429181870411384, - "size_x": 176, - "size_y": 256, - "size_z": 256, - "AcquisitionMatrix": "0/256/256/0", - "ProtocolName": "MPRAGE - BWM", - "summary_csf_p05": 61.0, - "icvs_wm": 0.3854450652716107, - "RepetitionTime": 2.53, - "summary_wm_stdv": 41.0584602355957, - "snrd_wm": 55.49715603785491, - "MagneticFieldStrength": 3, - "TotalScanTimeSec": 363, - "MRAcquisitionType": "3D", - "snr_total": 8.991814143978784, - "icvs_gm": 0.43805075863134624, - "summary_gm_mean": 246.0537872314453, - "rpve_csf": 82328.390625, - "tpm_overlap_wm": 0.5953307151794434, - "snrd_total": 37.91372531838636, - "PixelBandwidth": 200, - 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at end of file diff --git a/test/derivatives/sub-10672_T1w.json b/test/derivatives/sub-10672_T1w.json deleted file mode 100755 index 1a724cd..0000000 --- a/test/derivatives/sub-10672_T1w.json +++ /dev/null @@ -1,96 +0,0 @@ -{ - "snr_wm": 15.483876213947507, - "summary_bg_p95": 12.0, - "InversionTime": 1.1, - "fber": 47.46034240722656, - "DeviceSerialNumber": "35343", - "snrd_csf": 25.649369154493833, - "InPlanePhaseEncodingDirection": "ROW", - "summary_csf_stdv": 41.73203659057617, - "snrd_gm": 42.40317437529231, - "size_x": 176, - "size_y": 256, - "size_z": 256, - "AcquisitionMatrix": "0/256/256/0", - "ProtocolName": "MPRAGE - BWM", - "summary_csf_p05": 65.0, - "icvs_wm": 0.40694283553456917, - "RepetitionTime": 2.53, - "summary_wm_stdv": 40.93770980834961, - "snrd_wm": 59.91251096564638, - "MagneticFieldStrength": 3, - "TotalScanTimeSec": 363, - "MRAcquisitionType": "3D", - "snr_total": 8.852145249518792, - "icvs_gm": 0.43226909329732993, - "summary_gm_mean": 237.2789306640625, - 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a/test/derivatives/sub-10697_T1w.json b/test/derivatives/sub-10697_T1w.json deleted file mode 100755 index 4276292..0000000 --- a/test/derivatives/sub-10697_T1w.json +++ /dev/null @@ -1,96 +0,0 @@ -{ - "snr_wm": 14.940523593101492, - "summary_bg_p95": 12.0, - "InversionTime": 1.1, - "fber": 22.70221710205078, - "DeviceSerialNumber": "35343", - "snrd_csf": 22.44850851301087, - "InPlanePhaseEncodingDirection": "ROW", - "summary_csf_stdv": 38.717628479003906, - "snrd_gm": 38.11207549143991, - "size_x": 176, - "size_y": 256, - "size_z": 256, - "AcquisitionMatrix": "0/256/256/0", - "ProtocolName": "MPRAGE - BWM", - "summary_csf_p05": 54.0, - "icvs_wm": 0.39437329133596966, - "RepetitionTime": 2.53, - "summary_wm_stdv": 42.70762252807617, - "snrd_wm": 55.21994158586384, - "MagneticFieldStrength": 3, - "TotalScanTimeSec": 363, - "MRAcquisitionType": "3D", - "snr_total": 8.59380019796279, - "icvs_gm": 0.4188020521818372, - "summary_gm_mean": 217.62054443359375, - "rpve_csf": 92505.953125, - 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a/test/derivatives/sub-10746_T1w.json +++ /dev/null @@ -1,96 +0,0 @@ -{ - "snr_wm": 15.209566512724793, - "summary_bg_p95": 12.0, - "InversionTime": 1.1, - "fber": 25.33347511291504, - "DeviceSerialNumber": "35343", - "snrd_csf": 18.662757699647138, - "InPlanePhaseEncodingDirection": "ROW", - "summary_csf_stdv": 40.85422134399414, - "snrd_gm": 36.220678636197476, - "size_x": 176, - "size_y": 256, - "size_z": 256, - "AcquisitionMatrix": "0/256/256/0", - "ProtocolName": "MPRAGE - BWM", - "summary_csf_p05": 54.0, - "icvs_wm": 0.40021568168647553, - "RepetitionTime": 2.53, - "summary_wm_stdv": 42.30503845214844, - "snrd_wm": 52.932014892508654, - "MagneticFieldStrength": 3, - "TotalScanTimeSec": 363, - "MRAcquisitionType": "3D", - "snr_total": 8.462229024984092, - "icvs_gm": 0.42613261037786204, - "summary_gm_mean": 224.557373046875, - "rpve_csf": 92780.34375, - "tpm_overlap_wm": 0.6104186773300171, - "snrd_total": 35.93848374278442, - "PixelBandwidth": 200, - "ScanningSequence": "GR/IR", 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--git a/test/derivatives/sub-10762_T1w.json b/test/derivatives/sub-10762_T1w.json deleted file mode 100755 index bf968f7..0000000 --- a/test/derivatives/sub-10762_T1w.json +++ /dev/null @@ -1,96 +0,0 @@ -{ - "snr_wm": 15.609534876591516, - "summary_bg_p95": 11.0, - "InversionTime": 1.1, - "fber": 22.09418487548828, - "DeviceSerialNumber": "35343", - "snrd_csf": 27.35826287954249, - "InPlanePhaseEncodingDirection": "ROW", - "summary_csf_stdv": 37.679100036621094, - "snrd_gm": 43.846493023662696, - "size_x": 176, - "size_y": 256, - "size_z": 256, - "AcquisitionMatrix": "0/256/256/0", - "ProtocolName": "MPRAGE - BWM", - "summary_csf_p05": 71.0, - "icvs_wm": 0.38495883094156136, - "RepetitionTime": 2.53, - "summary_wm_stdv": 38.02106475830078, - "snrd_wm": 61.593905617988376, - "MagneticFieldStrength": 3, - "TotalScanTimeSec": 363, - "MRAcquisitionType": "3D", - "snr_total": 9.326812344940379, - "icvs_gm": 0.4314564579853093, - "summary_gm_mean": 226.8270721435547, - "rpve_csf": 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a/test/derivatives/sub-10877_T1w.json b/test/derivatives/sub-10877_T1w.json deleted file mode 100755 index 78d28d6..0000000 --- a/test/derivatives/sub-10877_T1w.json +++ /dev/null @@ -1,96 +0,0 @@ -{ - "snr_wm": 14.242095942866491, - "summary_bg_p95": 13.0, - "InversionTime": 1.1, - "fber": 17.458948135375977, - "DeviceSerialNumber": "35343", - "snrd_csf": 18.76460416254485, - "InPlanePhaseEncodingDirection": "ROW", - "summary_csf_stdv": 41.15403747558594, - "snrd_gm": 34.11991402422925, - "size_x": 176, - "size_y": 256, - "size_z": 256, - "AcquisitionMatrix": "0/256/256/0", - "ProtocolName": "MPRAGE - BWM", - "summary_csf_p05": 51.0, - "icvs_wm": 0.38675661658182975, - "RepetitionTime": 2.53, - "summary_wm_stdv": 39.94349670410156, - "snrd_wm": 47.862026163122856, - "MagneticFieldStrength": 3, - "TotalScanTimeSec": 363, - "MRAcquisitionType": "3D", - "snr_total": 8.33610956230604, - "icvs_gm": 0.4267436380038236, - "summary_gm_mean": 219.39752197265625, - "rpve_csf": 86251.4609375, - 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z3=1935Wgzl5{{?Q5vZY~!?(fsJ$fetOmz4{{3_3N z8oiYfD*7oMu75Mvi`ZbH!x`dNQI^x_IqXo;PpPl`8+2P8qk9S{saQ8Z%iT};Q#&~a7N|n From f4bd9518a6915ff0b4ca7d3fd128e3bfec644e7f Mon Sep 17 00:00:00 2001 From: fhuang Date: Tue, 23 May 2017 20:23:11 -0400 Subject: [PATCH 6/6] update settings --- dockereve-master/eve-app/settings.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/dockereve-master/eve-app/settings.py b/dockereve-master/eve-app/settings.py index 58ae642..0d251d1 100644 --- a/dockereve-master/eve-app/settings.py +++ b/dockereve-master/eve-app/settings.py @@ -9,7 +9,7 @@ 'X_DOMAINS': '*', 'DOMAIN': { 'bold': { - 'item_title': 'bold-2', + 'item_title': 'bold', 'resource_methods': ['GET', 'POST'], 'item_methods': ['GET', 'PATCH', 'PUT', 'DELETE'], 'schema': { @@ -237,7 +237,7 @@ } #end of schema },#end of bold 'T1w': { - 'item_title': 'T1w-', + 'item_title': 'T1w', 'resource_methods': ['GET', 'POST'], 'item_methods': ['GET', 'PATCH', 'PUT', 'DELETE'], 'schema': {