diff --git a/nih2mne/make_meg_bids_gui.py b/nih2mne/make_meg_bids_gui.py index e8e9590..599467f 100644 --- a/nih2mne/make_meg_bids_gui.py +++ b/nih2mne/make_meg_bids_gui.py @@ -11,7 +11,16 @@ font = ("Arial", 25) sg.set_options(font=font) - +def collapse(layout, key, visible): + """ + Helper function that creates a Column that can be later made hidden, thus appearing "collapsed" + :param layout: The layout for the section + :param key: Key used to make this section visible / invisible + :param visible: visible determines if section is rendered visible or invisible on initialization + :return: A pinned column that can be placed directly into your layout + :rtype: sg.pin + """ + return sg.pin(sg.Column(layout, key=key, visible=visible, pad=(0,0))) class window_opts: def __init__(self): @@ -64,39 +73,53 @@ def make_layout(options=None): ] # MRI opts + coreg_bsight_opts = [[sg.Text('Nifti MRI', key='bsight_file')], + [sg.Text('Bsight Elec file', key='bsight_elec')] + ] + coreg_afni_opts = [[sg.Text('Brik File', key='brik_file')]] + + coreg_opts = [ [sg.Combo(['BrainSight', 'Afni', 'None'], enable_events=True, readonly=True, k='-COREG-', - default_value='BrainSight')] + default_value='BrainSight')], + collapse(coreg_bsight_opts, '-COREG_BSIGHT-', False), + collapse(coreg_afni_opts, '-COREG_AFNI-', False), + ] - coreg_afni_opts = [ - [sg.Text('Brik File', key='brik_file')] - ] + # coreg_afni_opts = [ + # [sg.Text('Brik File', key='brik_file')] + # ] - coreg_bsight_opts = [ - [sg.Text('Nifti MRI', key='brik_file')] - ] + # coreg_bsight_opts = [ + # [sg.Text('Nifti MRI', key='brik_file')] + # ] layout = init_layout layout.append(l_button_opts) layout.append(standard_opts) - if options.ignore_mri_checks != True: - layout.append(coreg_opts) - layout.append(coreg_afni_opts) - layout.append(coreg_bsight_opts) + # if options.ignore_mri_checks != True: + layout.append(coreg_opts) layout.append([sg.Button('EXIT')]) return layout +global size_mult, font_size, x_size, y_size +size_mult=2 +font_size=12 +x_size = 400*size_mult +y_size = 600*size_mult + def get_window(options=None): layout = make_layout(options=options) window = sg.Window('MEG BIDS conversion', layout, resizable=True, auto_size_buttons=True, - scaling=True) + scaling=True, size=(x_size, y_size)) del layout return window opts = window_opts() window = get_window(opts) +coreg_toggle = False while True: event, values = window.read() @@ -109,6 +132,15 @@ def get_window(options=None): window['anonymize'].update(button_color='red') window['anonymize'].update(text='Anonymize: N') opts.anonymize = not opts.anonymize + + if event == '-COREG-': + if values['-COREG-'] == 'Brainsight': + window['-COREG_BSIGHT-'].update(visible=True) + elif values['-COREG-'] == 'Afni': + window['-COREG_AFNI-'].update(visible=True) + elif values['-COREG-'] == 'None': + window['-COREG_BSIGHT-'].update(visible=False) + window['-COREG_AFNI-'].update(visible=False) if event == 'set_coreg_afni': set_coreg_afni = True @@ -126,58 +158,20 @@ def get_window(options=None): +#%% + +# while True: +# event, values = window.read() + +# if event == 'checkbox_key': +# toggle_bool1 = not toggle_bool1 +# window['section_key'].update(visible=toggle_bool1) + +# ... +# if event == 'Quit' or event == sg.WIN_CLOSED: +# break -#%% -options: - -h, --help show this help message and exit - -bids_dir BIDS_DIR Output bids_dir path - -meg_input_dir MEG_INPUT_DIR - Acquisition directory - typically designated by the acquisition date - -anonymize Strip out subject ID information from the MEG data. Currently this does not - anonymize the MRI. Requires the CTF tools. - -bids_session BIDS_SESSION - Data acquisition session. This is set to 1 by default. If the same subject had - multiple sessions this must be set manually - -subjid_input SUBJID_INPUT - The default subject ID is given by the MEG hash. If more than one subject is - present in a folder, this option can be set to select a single subjects - dataset. - -bids_id BIDS_ID The default subject ID is given by the MEG hash. To override the default - subject ID, use this flag. If -anonymize is used, you must set the subjid - -autocrop_zeros If files are terminated early, leaving zeros at the end of the file - this - will detect and remove the trailing zeros. !!!Files larger than 2G will - Fail!!! - -Afni Coreg: - -mri_brik MRI_BRIK Afni coregistered MRI - -Brainsight Coreg: - -mri_bsight MRI_BSIGHT - Brainsight mri. This should be a .nii file. The exported electrodes text file - must be in the same folder and end in .txt. Otherwise, provide the - mri_sight_elec flag - -mri_bsight_elec MRI_BSIGHT_ELEC - Exported electrodes file from brainsight. This has the locations of the - fiducials - -ignore_mri_checks - -Optional Overrides: - -ignore_eroom If you are Not on Biowulf, use this option to prevent an error. Or if you - collected your own empty room data with your dataset - -supplement_eroom If emptyroom present - ignore, else add emptyroom from the biowulf repository. - -freesurfer Perform recon-all pipeline on the T1w. This is required for the mri_prep - portions below - -eventID_csv EVENTID_CSV - Provide the standardized event IDs. This can be produced by running: - standardize_eventID_list.py - -UNDER Construction - BIDS PostProcessing: - -project PROJECT Output project name for the mri processing from mri_prep - -mri_prep_s Perform the standard SURFACE processing for meg analysis - (watershed/bem/src/fwd) - -mri_prep_v Perform the standard VOLUME processing for meg analysis - (watershed/bem/src/fwd)