From 4cf7bff97d159eb0f6d0ee41ccf03df366e99e6e Mon Sep 17 00:00:00 2001 From: ngoyal95 Date: Tue, 27 Apr 2021 10:06:25 -0400 Subject: [PATCH] edited the matlab call --- data_prep/prep_stage_4.sh | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/data_prep/prep_stage_4.sh b/data_prep/prep_stage_4.sh index 57e3edc..19d1811 100755 --- a/data_prep/prep_stage_4.sh +++ b/data_prep/prep_stage_4.sh @@ -42,10 +42,10 @@ fi # STEP 1 - FSLNets to generate subject-level connectomes echo "Generating subject-level connectomes using FSLNets. This may take a while (6-8 hours)." -echo "stage_4_out=$STAGE_4_OUT/$NUMSUBS/" -echo "gica_path=$GICA" -echo "dr_path=$DR" -matlab -nodisplay -nodesktop -nojvm -r "stage_4_out="$STAGE_4_OUT/$NUMSUBS/"; gica_path="$GICA"; dr_path="$DR"; run $SUPPORT_SCRIPTS/stage_4/abcd_netmats.m" +# echo "stage_4_out=$STAGE_4_OUT/$NUMSUBS/" +# echo "gica_path=$GICA" +# echo "dr_path=$DR" +matlab -nodisplay -nodesktop -nojvm -r "stage_4_out="$STAGE_4_OUT/$NUMSUBS/"; gica_path="$GICA"; dr_path="$DR"; abcd_cca_dir="$ABCD_CCA_REPLICATION"; n_subs_in="$NUMSUBS"; run $SUPPORT_SCRIPTS/stage_4/abcd_netmats.m" # STEP 2 - Generate the NET matrix echo "Generating the aggregated subject connectome matrix."