diff --git a/NF.csv b/NF.csv index 3dd9c6c3..7916b5fe 100644 --- a/NF.csv +++ b/NF.csv @@ -130,6 +130,11 @@ cAMP-Glo Max Assay,"The cAMP-Glo Max Assay from Promega is a bioluminescent assa Von Frey test,Assay applying electrical stimulus to assess pain in rodents.,"","",FALSE,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5592204/,assay,,"","",Von_Frey_Test,"",Assay,Assay,"","","","" targeted exome sequencing,"Also known as Clinical Exome Sequencing, Targeted Exome Sequencing is a subset of WES as it covers a limited number of genes, typically 3000 to 6000 genes.","","",FALSE,https://labassure.com/whole-exome-sequencing-vs-clinical-exome-sequencing/,assay,,"","",Targeted_Exome_Sequencing,"",Assay,Assay,"","","","" jumping library,"","","",FALSE,"",assay,,"","",Jumping_Library,Class,Assay,Method,"","","","" +Child Behavior Checklist for Ages 1.5-5,"A standardized measure designed to detect behavioral and emotional problems in children 1.5-5 years old. The forms obtain parents', daycare providers', and teachers' ratings of 99 problem items plus descriptions of problems, disabilities, what concerns respondents most about the child, and the best things about the child. [ NCI ]","","",FALSE,"http://purl.obolibrary.org/obo/NCIT_C165712",assay,,"","",Child_Behavior_Checklist_for_Ages_1.5-5,Class,Assay,Method,"","","","" +Child Behavior Checklist for Ages 6-18,"A standardized measure designed to detect behavioral and emotional problems in children and adolescents. It is completed by the parent/caretaker who spends the most time with the child and provides ratings for 20 competence and 120 problem items. [ NCI ]","","",FALSE,"http://purl.obolibrary.org/obo/NCIT_C165711",assay,,"","",Child_Behavior_Checklist_for_Ages_6-18,Class,Assay,Clinical_Assay,"","","","" +"Social Responsiveness Scale","The Social Responsiveness Scale (SRS; Constantino et al., 2003) is a brief assessment tool for measuring autism traits. ","","",FALSE,"https://doi.org/10.1037/t17260-000",assay,,"","",Social_Responsiveness_Scale,Class,Assay,Clinical_Assay,"","","","" +"Social Responsiveness Scale, Second Edition","Identifies the presence and severity of social impairment within the autism spectrum and differentiates it from that which occurs in other disorders","","",FALSE,"https://www.wpspublish.com/srs-2-social-responsiveness-scale-second-edition",assay,,"","",Social_Responsiveness_Scale_Second_Edition,Class,Assay,Clinical_Assay,"","","","" +"NIH Toolbox","A comprehensive set of neuro-behavioral measures that assess cognitive, emotional, sensory, and motor functions, designed to be run on an iPad.","","",FALSE,"http://purl.obolibrary.org/obo/NCIT_C154482",assay,,"","",NIH_Toolbox,Class,Assay,Clinical_Assay,"","","","" channel,Fluorescent color labeling for an array,"Cy5, Cy3","",TRUE,"",array,,"","",Channel,"",Assay,Assay_Parameter,"","","","" MRISequence,The scanning sequence/modality that is used for a conventional MRI scan.,"T1-weighted,T2-weighted,PD-weighted,Short Tau Inversion Recovery","",FALSE,Sage Bionetworks,experimentalData,,"","",MRI_Sequence,Class,Assay,Assay_Parameter,"","","","" T1-weighted,"","","",FALSE,Sage Bionetworks,MRISequence,,"","",T1-weighted,Class,Assay,Assay_Parameter,MRI_Sequence,"","","" @@ -243,7 +248,7 @@ Illumina HumanOmniExpress-24 v1.2 BeadChip,,,,FALSE,https://www.ncbi.nlm.nih.gov Illumina HumanOmniExpress-24 v1.0 BeadChip,,,,FALSE,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL21168,platform,,,,Illumina_HumanOmniExpress-24_1.0_BeadChip,Class,Assay,Platform,Platform,,, Illumina Human660W-Quad v1.0 BeadChip,,,,FALSE,https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL8888,platform,,,,Illumina_Human660W-Quad_v1.0_BeadChip,Class,Assay,Platform,Platform,,, drugScreenType,String describing general class of drug screen,"singleMolecule, smallMoleculeLibraryScreen, combinationLibraryScreen, combinationScreen",,FALSE,,compoundScreen,,,,drugScreenType,Property,Assay,annotationProperty,,,, -assay,The technology used to generate the data in this file,"HPLC,elevated plus maze test,open field test,rotarod performance test,mRNA counts,high content screen,immunocytochemistry,immunofluorescence,autoradiography,reporter gene assay,electrochemiluminescence,in vivo tumor growth,blood chemistry measurement,in vivo bioluminescence,immunohistochemistry,NOMe-seq,FIA-MSMS,ultra high-performance liquid chromatography/tandem mass spectrometry,high-performance liquid chromatography/tandem mass spectrometry,liquid chromatography-electrochemical detection,RNA-seq,miRNA-seq,liquid chromatography/tandem mass spectrometry,liquid chromatography/mass spectrometry,lncRNA-seq,whole exome sequencing,Sanger sequencing,ChIP-seq,RNA array,SNP array,methylation array,miRNA array,bisulfite sequencing,ATAC-seq,HI-C,ERR bisulfite sequencing,ISO-seq,western blot,whole genome sequencing,polymerase chain reaction,cell viability assay,2D Incucyte,2D CellTiter-Glo,3D microtissue viability,2D AlamarBlue fluorescence,2D AlamarBlue absorbance,in vivo PDX viability,atomic force microscopy,brightfield microscopy,traction force microscopy,phase-contrast microscopy,next generation targeted sequencing,MIB/MS,scCGI-seq,MudPIT,questionnaire,DNA optical mapping,oxBS-seq,ribo-seq,positron emission tomography,RPPA,ELISA,long term potentiation assay,local field potential recording,whole-cell patch clamp,sandwich ELISA,laser speckle imaging,genotyping,TMT quantitation,mass spectrometry,label free mass spectrometry,cell count,immunoassay,conventional MRI,functional MRI,magnetic resonance spectroscopy,FTIR spectroscopy,rheometry,gel filtration chromatography,differential scanning calorimetry,single molecule drug screen assay,small molecule library screen,combination library screen,combination screen,compound screen,array,single-cell RNA-seq,spatial transcriptomics,massively parallel reporter assay,Riccardi and Ablon scales,spatial frequency domain imaging,optical coherence tomography,CUT&RUN,3D imaging,high frequency ultrasound,dynamic light scattering,static light scattering,light scattering assay,flow cytometry,pattern electroretinogram,optokinetic reflex assay,SUSHI,3D confocal imaging,3D electron microscopy,cell competition,body size trait measurement,twin spot assay,perineurial cell thickness,survival,gait measurement,sorbitol dehydrogenase activity level assay,T cell receptor repertoire sequencing,cell proliferation,oxygen consumption assay,reactive oxygen species assay,ATPase activity assay,novelty response behavior assay,contextual conditioning behavior assay,active avoidance learning behavior assay,focus forming assay,blue native PAGE,in vitro tumorigenesis,Matrigel-based tumorigenesis assay,calcium retention capacity assay,quantitative PCR,photograph,cAMP-Glo Max Assay,Von Frey test,targeted exome sequencing",,TRUE,,experimentalData,,,,assayType,Property,Assay,annotationProperty,,Assay,one, +assay,The technology used to generate the data in this file,"HPLC,elevated plus maze test,open field test,rotarod performance test,mRNA counts,high content screen,immunocytochemistry,immunofluorescence,autoradiography,reporter gene assay,electrochemiluminescence,in vivo tumor growth,blood chemistry measurement,in vivo bioluminescence,immunohistochemistry,NOMe-seq,FIA-MSMS,ultra high-performance liquid chromatography/tandem mass spectrometry,high-performance liquid chromatography/tandem mass spectrometry,liquid chromatography-electrochemical detection,RNA-seq,miRNA-seq,liquid chromatography/tandem mass spectrometry,liquid chromatography/mass spectrometry,lncRNA-seq,whole exome sequencing,Sanger sequencing,ChIP-seq,RNA array,SNP array,methylation array,miRNA array,bisulfite sequencing,ATAC-seq,HI-C,ERR bisulfite sequencing,ISO-seq,western blot,whole genome sequencing,polymerase chain reaction,cell viability assay,2D Incucyte,2D CellTiter-Glo,3D microtissue viability,2D AlamarBlue fluorescence,2D AlamarBlue absorbance,in vivo PDX viability,atomic force microscopy,brightfield microscopy,traction force microscopy,phase-contrast microscopy,next generation targeted sequencing,MIB/MS,scCGI-seq,MudPIT,questionnaire,DNA optical mapping,oxBS-seq,ribo-seq,positron emission tomography,RPPA,ELISA,long term potentiation assay,local field potential recording,whole-cell patch clamp,sandwich ELISA,laser speckle imaging,genotyping,TMT quantitation,mass spectrometry,label free mass spectrometry,cell count,immunoassay,conventional MRI,functional MRI,magnetic resonance spectroscopy,FTIR spectroscopy,rheometry,gel filtration chromatography,differential scanning calorimetry,single molecule drug screen assay,small molecule library screen,combination library screen,combination screen,compound screen,array,single-cell RNA-seq,spatial transcriptomics,massively parallel reporter assay,Riccardi and Ablon scales,spatial frequency domain imaging,optical coherence tomography,CUT&RUN,3D imaging,high frequency ultrasound,dynamic light scattering,static light scattering,light scattering assay,flow cytometry,pattern electroretinogram,optokinetic reflex assay,SUSHI,3D confocal imaging,3D electron microscopy,cell competition,body size trait measurement,twin spot assay,perineurial cell thickness,survival,gait measurement,sorbitol dehydrogenase activity level assay,T cell receptor repertoire sequencing,cell proliferation,oxygen consumption assay,reactive oxygen species assay,ATPase activity assay,novelty response behavior assay,contextual conditioning behavior assay,active avoidance learning behavior assay,focus forming assay,blue native PAGE,in vitro tumorigenesis,Matrigel-based tumorigenesis assay,calcium retention capacity assay,quantitative PCR,photograph,cAMP-Glo Max Assay,Von Frey test,targeted exome sequencing,Child Behavior Checklist for Ages 1.5-5,Child Behavior Checklist for Ages 6-18, Social Responsiveness Scale,'Social Responsiveness Scale, Second Edition', NIH Toolbox",,TRUE,,experimentalData,,,,assayType,Property,Assay,annotationProperty,,Assay,one, platform,"A sequencing platform, microscope, spectroscope/plate reader, or other platform for collecting data.","Illumina HiSeq 3000, Illumina HiSeq 2500, Illumina HiSeq 4000, Illumina NextSeq 500, Illumina HiSeq 2000, Illumina MiSeq, Zeiss LSM 980, Affymetrix Genome-Wide Human SNP 5.0 Array, Affymetrix Genome-Wide Human SNP 6.0 Array, PacBio RS II, Illumina Genome Analyzer IIx, Illumina HumanOmni1-Quadv1.0, Illumina 1M, Illumina h650, Illumina Omni2pt5M, Illumina Omni5M, Illumina MouseWG-6 v2.0 expression beadchip, Perlegen 300Karray, Agilent 44Karray, Illumina WholeGenome DASL, Illumina HumanHap300, Nanostring Counter, LTQ Orbitrap XL, Illumina HumanMethylation450, Illumina Infinium MethylationEPIC BeadChip v1.0 (850k),Illumina Infinium MethylationEPIC BeadChip v2.0 (935k), Affymetrix U133AB, Affymetrix Human Gene 1.0 ST Array, Affymetrix Human Genome U133 Plus 2.0 Array, Illumina HiSeq X, Bionano Irys, Infinium HumanOmniExpressExome, Illumina NextSeq 550, Illumina NextSeq 1000, Illumina NextSeq 2000, PacBio Sequel IIe System, PacBio Sequel II System, Nanostring GeoMx, LI-COR Odyssey CLx, Spectramax M Series, Olympus DP80, Orbitrap Fusion Lumos Tribrid, Illumina NovaSeq 6000, Chromium X,EnVision 2103 Multiplate Reader,Vectra H1 3D Imaging System,Vevo 3100 Imaging System,10x Visium Spatial Gene Expression,Cherry Imaging TRACE Platform,Cherry Imaging FACE Platform,LifeViz Micro System,LifeViz Infinity System,BGISEQ-500,Illumina HumanOmniExpress-24 v1.2 BeadChip,Illumina HumanOmniExpress-24 v1.0 BeadChip,Illumina Human660W-Quad v1.0 BeadChip",,TRUE,https://docs.gdc.cancer.gov/Data_Dictionary/viewer/#?view=table-definition-view&id=read_group&anchor=platform,experimentalData,,,,platform,Property,Assay,annotationProperty,,Platform,, targetCaptureKitID,"A unique identifier for the kit used to construct a genomic library using target capture-based techniques, which should be composed of the vendor name, kit name and kit version.",,,TRUE,http://purl.obolibrary.org/obo/NCIT_C177583,experimentalData,,,,targetCaptureKitID,Property,Assay,annotationProperty,,,,"For WES processing, the target BED used could be provided based on the target capture kit." libraryID,,,,TRUE,,experimentalData,,,,libraryID,Property,Assay,annotationProperty,,,, diff --git a/NF.jsonld b/NF.jsonld index 64f42f3a..e184c558 100644 --- a/NF.jsonld +++ b/NF.jsonld @@ -4229,6 +4229,91 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:ChildBehaviorChecklistforAges1.5-5", + "@type": "rdfs:Class", + "rdfs:comment": "A standardized measure designed to detect behavioral and emotional problems in children 1.5-5 years old. The forms obtain parents', daycare providers', and teachers' ratings of 99 problem items plus descriptions of problems, disabilities, what concerns respondents most about the child, and the best things about the child. [ NCI ]", + "rdfs:label": "ChildBehaviorChecklistforAges1.5-5", + "rdfs:subClassOf": [ + { + "@id": "bts:Assay" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Child Behavior Checklist for Ages 1.5-5", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:ChildBehaviorChecklistforAges6-18", + "@type": "rdfs:Class", + "rdfs:comment": "A standardized measure designed to detect behavioral and emotional problems in children and adolescents. It is completed by the parent/caretaker who spends the most time with the child and provides ratings for 20 competence and 120 problem items. [ NCI ]", + "rdfs:label": "ChildBehaviorChecklistforAges6-18", + "rdfs:subClassOf": [ + { + "@id": "bts:Assay" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Child Behavior Checklist for Ages 6-18", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:SocialResponsivenessScale", + "@type": "rdfs:Class", + "rdfs:comment": "The Social Responsiveness Scale (SRS; Constantino et al., 2003) is a brief assessment tool for measuring autism traits. ", + "rdfs:label": "SocialResponsivenessScale", + "rdfs:subClassOf": [ + { + "@id": "bts:Assay" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Social Responsiveness Scale", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:SocialResponsivenessScale,SecondEdition", + "@type": "rdfs:Class", + "rdfs:comment": "Identifies the presence and severity of social impairment within the autism spectrum and differentiates it from that which occurs in other disorders", + "rdfs:label": "SocialResponsivenessScale,SecondEdition", + "rdfs:subClassOf": [ + { + "@id": "bts:Assay" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Social Responsiveness Scale, Second Edition", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:NIHToolbox", + "@type": "rdfs:Class", + "rdfs:comment": "A comprehensive set of neuro-behavioral measures that assess cognitive, emotional, sensory, and motor functions, designed to be run on an iPad.", + "rdfs:label": "NIHToolbox", + "rdfs:subClassOf": [ + { + "@id": "bts:Assay" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "NIH Toolbox", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:Channel", "@type": "rdfs:Class", @@ -6586,6 +6671,24 @@ }, { "@id": "bts:Targetedexomesequencing" + }, + { + "@id": "bts:ChildBehaviorChecklistforAges1.5-5" + }, + { + "@id": "bts:ChildBehaviorChecklistforAges6-18" + }, + { + "@id": "bts:SocialResponsivenessScale" + }, + { + "@id": "bts:'SocialResponsivenessScale" + }, + { + "@id": "bts:SecondEdition'" + }, + { + "@id": "bts:NIHToolbox" } ], "sms:displayName": "assay", @@ -26831,6 +26934,40 @@ "sms:required": "sms:false", "sms:validationRules": [] }, + { + "@id": "bts:'SocialResponsivenessScale", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "'SocialResponsivenessScale", + "rdfs:subClassOf": [ + { + "@id": "bts:Assay" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "'Social Responsiveness Scale", + "sms:required": "sms:false", + "sms:validationRules": [] + }, + { + "@id": "bts:SecondEdition'", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "SecondEdition'", + "rdfs:subClassOf": [ + { + "@id": "bts:Assay" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Second Edition'", + "sms:required": "sms:false", + "sms:validationRules": [] + }, { "@id": "bts:Nuclei", "@type": "rdfs:Class", diff --git a/modules/Assay/Assay.csv b/modules/Assay/Assay.csv index 5c8724db..e1ecde15 100644 --- a/modules/Assay/Assay.csv +++ b/modules/Assay/Assay.csv @@ -130,3 +130,8 @@ cAMP-Glo Max Assay,"The cAMP-Glo Max Assay from Promega is a bioluminescent assa Von Frey test,Assay applying electrical stimulus to assess pain in rodents.,"","",FALSE,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5592204/,assay,,"","",Von_Frey_Test,"",Assay,Assay,"","","","" targeted exome sequencing,"Also known as Clinical Exome Sequencing, Targeted Exome Sequencing is a subset of WES as it covers a limited number of genes, typically 3000 to 6000 genes.","","",FALSE,https://labassure.com/whole-exome-sequencing-vs-clinical-exome-sequencing/,assay,,"","",Targeted_Exome_Sequencing,"",Assay,Assay,"","","","" jumping library,"","","",FALSE,"",assay,,"","",Jumping_Library,Class,Assay,Method,"","","","" +Child Behavior Checklist for Ages 1.5-5,"A standardized measure designed to detect behavioral and emotional problems in children 1.5-5 years old. The forms obtain parents', daycare providers', and teachers' ratings of 99 problem items plus descriptions of problems, disabilities, what concerns respondents most about the child, and the best things about the child. [ NCI ]","","",FALSE,"http://purl.obolibrary.org/obo/NCIT_C165712",assay,,"","",Child_Behavior_Checklist_for_Ages_1.5-5,Class,Assay,Method,"","","","" +Child Behavior Checklist for Ages 6-18,"A standardized measure designed to detect behavioral and emotional problems in children and adolescents. It is completed by the parent/caretaker who spends the most time with the child and provides ratings for 20 competence and 120 problem items. [ NCI ]","","",FALSE,"http://purl.obolibrary.org/obo/NCIT_C165711",assay,,"","",Child_Behavior_Checklist_for_Ages_6-18,Class,Assay,Clinical_Assay,"","","","" +"Social Responsiveness Scale","The Social Responsiveness Scale (SRS; Constantino et al., 2003) is a brief assessment tool for measuring autism traits. ","","",FALSE,"https://doi.org/10.1037/t17260-000",assay,,"","",Social_Responsiveness_Scale,Class,Assay,Clinical_Assay,"","","","" +"Social Responsiveness Scale, Second Edition","Identifies the presence and severity of social impairment within the autism spectrum and differentiates it from that which occurs in other disorders","","",FALSE,"https://www.wpspublish.com/srs-2-social-responsiveness-scale-second-edition",assay,,"","",Social_Responsiveness_Scale_Second_Edition,Class,Assay,Clinical_Assay,"","","","" +"NIH Toolbox","A comprehensive set of neuro-behavioral measures that assess cognitive, emotional, sensory, and motor functions, designed to be run on an iPad.","","",FALSE,"http://purl.obolibrary.org/obo/NCIT_C154482",assay,,"","",NIH_Toolbox,Class,Assay,Clinical_Assay,"","","","" diff --git a/modules/Assay/annotationProperty.csv b/modules/Assay/annotationProperty.csv index 89b774fd..b808bfb0 100644 --- a/modules/Assay/annotationProperty.csv +++ b/modules/Assay/annotationProperty.csv @@ -1,7 +1,7 @@ Attribute,Description,Valid Values,DependsOn,Required,Source,Parent,Properties,DependsOn Component,Validation Rules,.ID,.Type,.Module,.Root,.SubOf,.Range,.Cardinality,.EditorNote drugScreenType,String describing general class of drug screen,"singleMolecule, smallMoleculeLibraryScreen, combinationLibraryScreen, combinationScreen",,FALSE,,compoundScreen,,,,drugScreenType,Property,Assay,annotationProperty,,,, -assay,The technology used to generate the data in this file,"HPLC,elevated plus maze test,open field test,rotarod performance test,mRNA counts,high content screen,immunocytochemistry,immunofluorescence,autoradiography,reporter gene assay,electrochemiluminescence,in vivo tumor growth,blood chemistry measurement,in vivo bioluminescence,immunohistochemistry,NOMe-seq,FIA-MSMS,ultra high-performance liquid chromatography/tandem mass spectrometry,high-performance liquid chromatography/tandem mass spectrometry,liquid chromatography-electrochemical detection,RNA-seq,miRNA-seq,liquid chromatography/tandem mass spectrometry,liquid chromatography/mass spectrometry,lncRNA-seq,whole exome sequencing,Sanger sequencing,ChIP-seq,RNA array,SNP array,methylation array,miRNA array,bisulfite sequencing,ATAC-seq,HI-C,ERR bisulfite sequencing,ISO-seq,western blot,whole genome sequencing,polymerase chain reaction,cell viability assay,2D Incucyte,2D CellTiter-Glo,3D microtissue viability,2D AlamarBlue fluorescence,2D AlamarBlue absorbance,in vivo PDX viability,atomic force microscopy,brightfield microscopy,traction force microscopy,phase-contrast microscopy,next generation targeted sequencing,MIB/MS,scCGI-seq,MudPIT,questionnaire,DNA optical mapping,oxBS-seq,ribo-seq,positron emission tomography,RPPA,ELISA,long term potentiation assay,local field potential recording,whole-cell patch clamp,sandwich ELISA,laser speckle imaging,genotyping,TMT quantitation,mass spectrometry,label free mass spectrometry,cell count,immunoassay,conventional MRI,functional MRI,magnetic resonance spectroscopy,FTIR spectroscopy,rheometry,gel filtration chromatography,differential scanning calorimetry,single molecule drug screen assay,small molecule library screen,combination library screen,combination screen,compound screen,array,single-cell RNA-seq,spatial transcriptomics,massively parallel reporter assay,Riccardi and Ablon scales,spatial frequency domain imaging,optical coherence tomography,CUT&RUN,3D imaging,high frequency ultrasound,dynamic light scattering,static light scattering,light scattering assay,flow cytometry,pattern electroretinogram,optokinetic reflex assay,SUSHI,3D confocal imaging,3D electron microscopy,cell competition,body size trait measurement,twin spot assay,perineurial cell thickness,survival,gait measurement,sorbitol dehydrogenase activity level assay,T cell receptor repertoire sequencing,cell proliferation,oxygen consumption assay,reactive oxygen species assay,ATPase activity assay,novelty response behavior assay,contextual conditioning behavior assay,active avoidance learning behavior assay,focus forming assay,blue native PAGE,in vitro tumorigenesis,Matrigel-based tumorigenesis assay,calcium retention capacity assay,quantitative PCR,photograph,cAMP-Glo Max Assay,Von Frey test,targeted exome sequencing",,TRUE,,experimentalData,,,,assayType,Property,Assay,annotationProperty,,Assay,one, -platform,"A sequencing platform, microscope, spectroscope/plate reader, or other platform for collecting data.","Illumina HiSeq 3000, Illumina HiSeq 2500, Illumina HiSeq 4000, Illumina NextSeq 500, Illumina HiSeq 2000, Illumin-a MiSeq, Zeiss LSM 980, Affymetrix Genome-Wide Human SNP 5.0 Array, Affymetrix Genome-Wide Human SNP 6.0 Array, PacBio RS II, Illumina Genome Analyzer IIx, Illumina HumanOmni1-Quadv1.0, Illumina 1M, Illumina h650, Illumina Omni2pt5M, Illumina Omni5M, Illumina MouseWG-6 v2.0 expression beadchip, Perlegen 300Karray, Agilent 44Karray, Illumina WholeGenome DASL, Illumina HumanHap300, Nanostring Counter, LTQ Orbitrap XL, Illumina HumanMethylation450, Illumina Infinium MethylationEPIC BeadChip v1.0 (850k),Illumina Infinium MethylationEPIC BeadChip v2.0 (935k), Affymetrix U133AB, Affymetrix Human Gene 1.0 ST Array, Affymetrix Human Genome U133 Plus 2.0 Array, Illumina HiSeq X, Bionano Irys, Infinium HumanOmniExpressExome, Illumina NextSeq 550, Illumina NextSeq 1000, Illumina NextSeq 2000, PacBio Sequel IIe System, PacBio Sequel II System, Nanostring GeoMx, LI-COR Odyssey CLx, Spectramax M Series, Olympus DP80, Orbitrap Fusion Lumos Tribrid, Illumina NovaSeq 6000, Chromium X,EnVision 2103 Multiplate Reader,Vectra H1 3D Imaging System,Vevo 3100 Imaging System,10x Visium Spatial Gene Expression,Cherry Imaging TRACE Platform,Cherry Imaging FACE Platform,LifeViz Micro System,LifeViz Infinity System,BGISEQ-500,Illumina HumanOmniExpress-24 v1.2 BeadChip,Illumina HumanOmniExpress-24 v1.0 BeadChip,Illumina Human660W-Quad v1.0 BeadChip",,TRUE,https://docs.gdc.cancer.gov/Data_Dictionary/viewer/#?view=table-definition-view&id=read_group&anchor=platform,experimentalData,,,,platform,Property,Assay,annotationProperty,,Platform,, +assay,The technology used to generate the data in this file,"HPLC,elevated plus maze test,open field test,rotarod performance test,mRNA counts,high content screen,immunocytochemistry,immunofluorescence,autoradiography,reporter gene assay,electrochemiluminescence,in vivo tumor growth,blood chemistry measurement,in vivo bioluminescence,immunohistochemistry,NOMe-seq,FIA-MSMS,ultra high-performance liquid chromatography/tandem mass spectrometry,high-performance liquid chromatography/tandem mass spectrometry,liquid chromatography-electrochemical detection,RNA-seq,miRNA-seq,liquid chromatography/tandem mass spectrometry,liquid chromatography/mass spectrometry,lncRNA-seq,whole exome sequencing,Sanger sequencing,ChIP-seq,RNA array,SNP array,methylation array,miRNA array,bisulfite sequencing,ATAC-seq,HI-C,ERR bisulfite sequencing,ISO-seq,western blot,whole genome sequencing,polymerase chain reaction,cell viability assay,2D Incucyte,2D CellTiter-Glo,3D microtissue viability,2D AlamarBlue fluorescence,2D AlamarBlue absorbance,in vivo PDX viability,atomic force microscopy,brightfield microscopy,traction force microscopy,phase-contrast microscopy,next generation targeted sequencing,MIB/MS,scCGI-seq,MudPIT,questionnaire,DNA optical mapping,oxBS-seq,ribo-seq,positron emission tomography,RPPA,ELISA,long term potentiation assay,local field potential recording,whole-cell patch clamp,sandwich ELISA,laser speckle imaging,genotyping,TMT quantitation,mass spectrometry,label free mass spectrometry,cell count,immunoassay,conventional MRI,functional MRI,magnetic resonance spectroscopy,FTIR spectroscopy,rheometry,gel filtration chromatography,differential scanning calorimetry,single molecule drug screen assay,small molecule library screen,combination library screen,combination screen,compound screen,array,single-cell RNA-seq,spatial transcriptomics,massively parallel reporter assay,Riccardi and Ablon scales,spatial frequency domain imaging,optical coherence tomography,CUT&RUN,3D imaging,high frequency ultrasound,dynamic light scattering,static light scattering,light scattering assay,flow cytometry,pattern electroretinogram,optokinetic reflex assay,SUSHI,3D confocal imaging,3D electron microscopy,cell competition,body size trait measurement,twin spot assay,perineurial cell thickness,survival,gait measurement,sorbitol dehydrogenase activity level assay,T cell receptor repertoire sequencing,cell proliferation,oxygen consumption assay,reactive oxygen species assay,ATPase activity assay,novelty response behavior assay,contextual conditioning behavior assay,active avoidance learning behavior assay,focus forming assay,blue native PAGE,in vitro tumorigenesis,Matrigel-based tumorigenesis assay,calcium retention capacity assay,quantitative PCR,photograph,cAMP-Glo Max Assay,Von Frey test,targeted exome sequencing,Child Behavior Checklist for Ages 1.5-5,Child Behavior Checklist for Ages 6-18, Social Responsiveness Scale,'Social Responsiveness Scale, Second Edition', NIH Toolbox",,TRUE,,experimentalData,,,,assayType,Property,Assay,annotationProperty,,Assay,one, +platform,"A sequencing platform, microscope, spectroscope/plate reader, or other platform for collecting data.","Illumina HiSeq 3000, Illumina HiSeq 2500, Illumina HiSeq 4000, Illumina NextSeq 500, Illumina HiSeq 2000, Illumina MiSeq, Zeiss LSM 980, Affymetrix Genome-Wide Human SNP 5.0 Array, Affymetrix Genome-Wide Human SNP 6.0 Array, PacBio RS II, Illumina Genome Analyzer IIx, Illumina HumanOmni1-Quadv1.0, Illumina 1M, Illumina h650, Illumina Omni2pt5M, Illumina Omni5M, Illumina MouseWG-6 v2.0 expression beadchip, Perlegen 300Karray, Agilent 44Karray, Illumina WholeGenome DASL, Illumina HumanHap300, Nanostring Counter, LTQ Orbitrap XL, Illumina HumanMethylation450, Illumina Infinium MethylationEPIC BeadChip v1.0 (850k),Illumina Infinium MethylationEPIC BeadChip v2.0 (935k), Affymetrix U133AB, Affymetrix Human Gene 1.0 ST Array, Affymetrix Human Genome U133 Plus 2.0 Array, Illumina HiSeq X, Bionano Irys, Infinium HumanOmniExpressExome, Illumina NextSeq 550, Illumina NextSeq 1000, Illumina NextSeq 2000, PacBio Sequel IIe System, PacBio Sequel II System, Nanostring GeoMx, LI-COR Odyssey CLx, Spectramax M Series, Olympus DP80, Orbitrap Fusion Lumos Tribrid, Illumina NovaSeq 6000, Chromium X,EnVision 2103 Multiplate Reader,Vectra H1 3D Imaging System,Vevo 3100 Imaging System,10x Visium Spatial Gene Expression,Cherry Imaging TRACE Platform,Cherry Imaging FACE Platform,LifeViz Micro System,LifeViz Infinity System,BGISEQ-500,Illumina HumanOmniExpress-24 v1.2 BeadChip,Illumina HumanOmniExpress-24 v1.0 BeadChip,Illumina Human660W-Quad v1.0 BeadChip",,TRUE,https://docs.gdc.cancer.gov/Data_Dictionary/viewer/#?view=table-definition-view&id=read_group&anchor=platform,experimentalData,,,,platform,Property,Assay,annotationProperty,,Platform,, targetCaptureKitID,"A unique identifier for the kit used to construct a genomic library using target capture-based techniques, which should be composed of the vendor name, kit name and kit version.",,,TRUE,http://purl.obolibrary.org/obo/NCIT_C177583,experimentalData,,,,targetCaptureKitID,Property,Assay,annotationProperty,,,,"For WES processing, the target BED used could be provided based on the target capture kit." libraryID,,,,TRUE,,experimentalData,,,,libraryID,Property,Assay,annotationProperty,,,, assayTarget,The HUGO gene symbol that represents the target analyte assayed.,,,FALSE,Sage Bionetworks,experimentalData,,,,assayTarget,Property,Assay,annotationProperty,,,,