add the "script" section to the manifest JSON file

[stevekm]

can we the get the Nextflow process script section added to the output for each Nextflow task? Preferably whatever the contents of the .command.sh file include would be great, thanks. Not sure if its currently available? I am not seeing it in any of my manifest or bco JSON files.

[bentsherman]

The BCO format does not have any field for the task script as far as I can tell, but it could be added to the "legacy" format, see #16

[stevekm]

that sounds great, I was already saving both formats anyway.

[stevekm]

at the risk of scope creep on this issue, I am wondering if this could also include the task .command.log contents too?

[stevekm]

maybe worth keeping this in mind too #7 if more potentially large attributes are getting added to the manifest JSON