Output MITI metadata

[adamjtaylor]

See example from Orion minerva story https://labsyspharm.github.io/orion-crc/minerva-story/P37_S32-CRC04/index.html#s=0#w=0#g=0#m=-1#a=-100_-100#v=0.4381_0.7826_0.4502#o=-100_-100_1_1#p=Q#r=100
Metadata about this sample
15/16
Diagnosis
Age at Diagnosis: 56 years
Primary Diagnosis: Adenocarcinoma NOS
Site of Resection or Biopsy: Rectosigmoid junction
Tumor Grade: High Grade
Stage at Diagnosis: IIIB

Demographics
Species: Human
Vital Status: Deceased
Cause of death: Cancer-related
Sex: Male
Race: White
Ethnicity: Not hispanic or latino

Therapy
Pre-operative: None Post-operative: Chemotherapy (FOLFOX) and radiation Initial Disease Status: Initial Diagnosis

Follow Up
Progression: Yes - Progression or Recurrence
Last Known Disease Status: Distant met recurrence/progression
Age at Follow Up: 58 years
Days to Progression: 459

Biospecimen
Acquisition Method Type: Surgical Resection

Molecular Test
Molecular analysis method: Targeted Sequencing
Genotype Available: Yes
Genetic Features: p53, BRAF

Imaging
Imaging Assay Type:
Fixative Type: Formalin
Microscope: RareCyte Orion
Objective: 20X0.75 NA
Binned:

Publication and Data Availability
Associated Data:
DOI: 10.5281/zenodo.7637655 Visit tissue-atlas.org/atlas-datasets/lin-chen-campton-2023 to learn more.

Attribution:
Please cite the publication and underlying data as:
Lin, J.R., Chen, Y.A., Campton, D., et al., Nature Cancer, 2023, DOI: 10.1038/s43018-023-00576-1.

Please cite this Minerva Story as:
Juliann Tefft, Yu-An Chen, Shannon Coy, Jia-Ren Lin, and Sarah Arena. Multimodal spatial profiling of colorectal cancer using Orion. Harvard Dataverse. V1, 2023, DOI: 10.7910/DVN/76DTDF.

Associated Identifiers
ID Type ID
LSP Slide ID LSP10388
Publication Participant No. C04
HTAN Participant ID HTA7_934
HTAN Biospec. Block ID HTA79341
HTAN Biospec. Section ID HTA79349