From 73257ff486ca660e4c555ec62b5b24e0b9e07f3f Mon Sep 17 00:00:00 2001
From: Adam Taylor <adam.taylor@sagebase.org>
Date: Thu, 30 May 2024 15:12:15 +0100
Subject: [PATCH] Updates to precancer and vital status dependencies

---
 HTAN.model.csv | 11 ++++++-----
 1 file changed, 6 insertions(+), 5 deletions(-)

diff --git a/HTAN.model.csv b/HTAN.model.csv
index c6bc4c1e..cf4c5aa8 100644
--- a/HTAN.model.csv
+++ b/HTAN.model.csv
@@ -1030,10 +1030,11 @@ Barretts Esophagus Goblet Cells Present,Presence or absennce of Barretts esophag
 Pancreatitis Onset Year,Date of onset of pancreatitis.,,,,FALSE,Follow Up,,,num
 HTAN Parent Channel Metadata ID,HTAN ID for a level 3 channels table.,,,,TRUE, Imaging Level 4,,,
 Single Nucleus Capture,Nuclei isolation method,"Plates, 10x, droplet",,,FALSE,scmC-seq Level 1,,,
-Participant Vital Status Update,Updates to a participants vital status,,"Vital Status",,FALSE,Patient,,,
-Precancer Diagnosis,Diagnosis of a precancerous condition,,"Precancer Case, Days to Precancer Case Designation, Precancerous Condition Type, WHO Precursor Lesion Code",,FALSE,Patient,,,
-Days to Vital Status Reference,Number of days between the date used for index and the reference date for designation of vital status,,,,FALSE,Patient,,,int
-Precancer Case,Yes/No indicator to designate the participant for whom precancerous lesion(s) was identified (premalignancy only).,"Yes, No, Not Reported, unknown",,,FALSE,Patient,,,
+Participant Vital Status Update,Updates to a participants vital status,,"Component, HTAN Participant ID, Vital Status",,FALSE,Patient,,,
+Precancer Diagnosis,Diagnosis of a precancerous condition,,"Component, HTAN Participant ID, Precancer Case",,FALSE,Patient,,,
+Alive,This indicates the participant is alive and defines further required metadata,,Days to Vital Status Reference,,FALSE,Patient,,,
+Days to Vital Status Reference,Number of days between the date used for index and the reference date for designation of vital status,,,,TRUE,Patient,,,int
+Precancer Case,Yes/No indicator to designate the participant for whom precancerous lesion(s) was identified (premalignancy only).,"Yes - Precancer Case, No, Not Reported, unknown",,,TRUE,Patient,,,
+Yes - Precancer Case,Indicates that the participant is a precancer case,,"Precancerous Condition Type, Days to Precancer Case Designation, WHO Precursor Lesion Code",,FALSE,Patient,,,
 Days to Precancer Case Designation,Number of days between the date used for index and the reference date for designation of precancer status.,,,,FALSE,Patient,,,int
 WHO Precursor Lesion Code,"World Health Organization Classification of Tumour cytopathology-based coding system, includes 'precursor lesion' designations for precancers. ICD-O-3 morphology axis format eg 1234/1",,,,FALSE,Patient,,,regex match ^\d{4}\/[0-3]$
-Alive,This indicates the participant is alive and defines further required metadata,,"Days to Vital Status Reference"