diff --git a/GeneLab_Reference_Annotations/Workflow_Documentation/GL_RefAnnotTable-A/README.md b/GeneLab_Reference_Annotations/Workflow_Documentation/GL_RefAnnotTable-A/README.md index 9bfea792..44e5de46 100644 --- a/GeneLab_Reference_Annotations/Workflow_Documentation/GL_RefAnnotTable-A/README.md +++ b/GeneLab_Reference_Annotations/Workflow_Documentation/GL_RefAnnotTable-A/README.md @@ -96,7 +96,7 @@ Once complete, a `singularity` folder containing the Singularity images will be # Set R library path to current working directory export R_LIBS_USER=$(pwd)/R_libs # Create the specified R library path if it doesn't already exist -mkdir -p $R_LIBS +mkdir -p $R_LIBS_USER # Set Singularity cache directory export SINGULARITY_CACHEDIR=$(pwd)/singularity @@ -217,6 +217,11 @@ If the reference table does not specify an annotations database for the target o ```bash # Set R library path if not already set export R_LIBS_USER=$(pwd)/R_libs +# Create the specified R library path if it doesn't already exist +mkdir -p $R_LIBS_USER + +# Set Singularity cache directory if not already set +export SINGULARITY_CACHEDIR=$(pwd)/singularity singularity exec \ --bind $(pwd):$(pwd) \