From 810fc7afea47a4075f890ae7b8b1070527d69c41 Mon Sep 17 00:00:00 2001 From: asaravia-butler <70983120+asaravia-butler@users.noreply.github.com> Date: Wed, 4 Dec 2024 23:38:09 -0800 Subject: [PATCH] Add updates for v1.2.3 --- .../SW_AmpIllumina-B/CHANGELOG.md | 10 +++++++++- 1 file changed, 9 insertions(+), 1 deletion(-) diff --git a/Amplicon/Illumina/Workflow_Documentation/SW_AmpIllumina-B/CHANGELOG.md b/Amplicon/Illumina/Workflow_Documentation/SW_AmpIllumina-B/CHANGELOG.md index 89d2e060..59e04298 100644 --- a/Amplicon/Illumina/Workflow_Documentation/SW_AmpIllumina-B/CHANGELOG.md +++ b/Amplicon/Illumina/Workflow_Documentation/SW_AmpIllumina-B/CHANGELOG.md @@ -1,5 +1,13 @@ # Workflow change log +## [1.2.3](https://github.com/nasa/GeneLab_Data_Processing/tree/SW_AmpIllumina-B_1.2.3/Amplicon/Illumina/Workflow_Documentation/SW_AmpIllumina-B) +- Fixed broken decipher reference database links to the following: + - 16S: https://www2.decipher.codes/data/Downloads/TrainingSets/SILVA_SSU_r138_2019.RData + - ITS: https://www2.decipher.codes/data/Downloads/TrainingSets/UNITE_v2023_July2023.RData + - 18S: https://www2.decipher.codes/data/Downloads/TrainingSets/PR2_v4_13_March2021.RData +- Visualizations default setting is now set to TRUE + - Disable with optional `run_workflow.py` argument `--visualizations FALSE` or setting `config.yaml` `enable_visualizations` to "FALSE" + ## [1.2.2](https://github.com/nasa/GeneLab_Data_Processing/tree/SW_AmpIllumina-B_1.2.2/Amplicon/Illumina/Workflow_Documentation/SW_AmpIllumina-B) - Visualizations are now optional with the default being off. - Enable with optional `run_workflow.py` argument `--visualizations TRUE` or setting `config.yaml` `enable_visualizations` to "TRUE" @@ -36,4 +44,4 @@
-All previous workflow changes were associated with [version A of the GeneLab Amplicon Seq Illumina Pipeline](../../Pipeline_GL-DPPD-7104_Versions/GL-DPPD-7104-A.md), and can be found in the [change log of the SW_AmpIllumina-A workflow](../SW_AmpIllumina-A/CHANGELOG.md). \ No newline at end of file +All previous workflow changes were associated with [version A of the GeneLab Amplicon Seq Illumina Pipeline](../../Pipeline_GL-DPPD-7104_Versions/GL-DPPD-7104-A.md), and can be found in the [change log of the SW_AmpIllumina-A workflow](../SW_AmpIllumina-A/CHANGELOG.md).