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94 Open 247 Closed
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Issues list

Bonito with different torch version
#403 opened Nov 29, 2024 by NLKaiser
Merging data from several basecaller runs
#402 opened Nov 7, 2024 by dylanlawrencebio
NCM_2024 New models
#400 opened Sep 20, 2024 by wangziyuan66
undefined symbol: cublasGemmEx
#399 opened Sep 12, 2024 by Sheng-T
Retrieving every paths examined in beam search module
#397 opened Jun 25, 2024 by seungbeom-han
Training Data Used for Pre-made models
#396 opened Jun 20, 2024 by xav611
Is it possible to use a Bonito trained or fine-tuned model with dorado duplex basecalling.
#395 opened Jun 17, 2024 by mark-sor2
[Errno 2] No such file or directory: '/data/training/ctc-data/dataset.py'
#391 opened Jun 4, 2024 by baronfairy
2
bonito duplex runs out of memory
#390 opened May 29, 2024 by sathish-t
1
Applying INT8 quantization, just like in Dorado
#388 opened Apr 14, 2024 by wtrinh8
2
Chunks.npy and Dataset.py not being generated
#385 opened Apr 1, 2024 by Sgreenfield9
2
bonito WASM
#383 opened Mar 13, 2024 by lpryszcz
Feature request: export the list of reads used to train a model
#382 opened Feb 19, 2024 by andreaswallberg
RNA004 Does not output any CTC data question Further information is requested
#379 opened Feb 5, 2024 by VBHarrisN
@iiSeymour
3
RNA002 model
#378 opened Feb 1, 2024 by shizhuoxing
1
Short basecalled R9.4.1 reads using both trained and default models in bonito, but not in guppy
#376 opened Dec 20, 2023 by andreaswallberg
how to calibrate CTC-CRF model base qualities?
#375 opened Dec 15, 2023 by lpryszcz
3
how bonito normalize raw signals when save-ctc
#374 opened Dec 11, 2023 by xieyy46
2
Update for remora 3.0.0 trained model?
#373 opened Dec 1, 2023 by Mathias-Boulanger
5mC detection for RNA
#365 opened Oct 26, 2023 by keenhl
bonito basecall model refinement preprocessing memory issues
#361 opened Aug 28, 2023 by CodingKaiser
1
DNA 9.4 model info
#360 opened Aug 21, 2023 by lkwhite
1
question about function prepare_ctc_scores in CTC_CRF class
#359 opened Aug 21, 2023 by Fangwq
How to train my data
#357 opened Aug 1, 2023 by xysgxbns
Trace-like output from CTC-CRF models
#350 opened Jun 14, 2023 by lpryszcz
ProTip! What’s not been updated in a month: updated:<2024-10-29.