diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..f5b758a
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1,10 @@
+venv
+.idea
+logs
+data
+Classifier/models_folder/models/CLASS
+Classifier/models_folder/models/PATHWAY
+Classifier/models_folder/models/SUPERCLASS
+Classifier/models_folder/models/*.hdf5
+Classifier/models_folder/models/models.zip
+Classifier/models_folder/models/models.config
diff --git a/Classifier/models_folder/README.md b/Classifier/models_folder/README.md
index 3503165..bc076e6 100644
--- a/Classifier/models_folder/README.md
+++ b/Classifier/models_folder/README.md
@@ -2,7 +2,8 @@
 
 What we need to do is convert keras hdf5 model to tensor flow model. 
 
-1. Download Model with get_models.sh
+1. Make sure you have tensorflow installed
+1. Download Model with . ./get_models.sh
 1. Create folder SUPERCLASS/000001
 1. Create folder CLASS/000001
 1. Create folder PATHWAY/000001
@@ -11,4 +12,4 @@ What we need to do is convert keras hdf5 model to tensor flow model.
 1. Place model in appropriate folder also in versioned folder CLASS/000001
 1. Place model in appropriate folder also in versioned folder PATHWAY/000001
 
-Note: to get the model metadata, go to ```/model/metadata```
\ No newline at end of file
+Note: to get the model metadata, go to ```/model/metadata```
diff --git a/README.md b/README.md
index 713863a..20c30b5 100644
--- a/README.md
+++ b/README.md
@@ -2,9 +2,18 @@
 
 ![production-integration](https://github.com/mwang87/NP-Classifier/workflows/production-integration/badge.svg)
 
-We typitcally will deploy this locally. To bring everything up
+We typically will deploy this locally. To bring everything up, 
+you need docker and docker-compose.
 
-```server-compose```
+If you didn't do it already, you will need a network.
+
+```shell
+docker network create nginx-net
+```
+
+```shell
+make server-compose
+```
 
 ### Checking Model Metadata
 
diff --git a/app.py b/app.py
index a629d54..eecfd4a 100644
--- a/app.py
+++ b/app.py
@@ -45,6 +45,7 @@
                 dbc.NavItem(dbc.NavLink("Report Feedback", href="https://docs.google.com/forms/d/e/1FAIpQLSf1-sw-P0SQGokyeaOpEmLda0UPJW93qkrI8rfp7D46fHVi6g/viewform?usp=sf_link")),
                 dbc.NavItem(dbc.NavLink("Preprint Publication", href="https://chemrxiv.org/articles/preprint/NPClassifier_A_Deep_Neural_Network-Based_Structural_Classification_Tool_for_Natural_Products/12885494/1")),
                 dbc.NavItem(dbc.NavLink("API", href="https://ccms-ucsd.github.io/GNPSDocumentation/api/#structure-np-classifier")),
+                dbc.NavItem(dbc.NavLink("Source code", href="https://github.com/mwang87/NP-Classifier"))
             ],
         navbar=True)
     ],
@@ -101,7 +102,7 @@ def display_page(pathname):
     else:
         return "CC1C(O)CC2C1C(OC1OC(COC(C)=O)C(O)C(O)C1O)OC=C2C(O)=O"
 
-# This function will rerun at any 
+# This function will rerun at any
 @app.callback(
     [Output('classification_table', 'children'), Output('structure', 'children')],
     [Input('smiles_string', 'value')],
@@ -162,7 +163,7 @@ def handle_smiles(smiles_string):
 
     return [table_fig, img_obj]
 
-# This function will rerun at any 
+# This function will rerun at any
 @app.callback(
     [Output('usage_summary', 'children')],
     [Input('url', 'pathname')],
@@ -237,16 +238,16 @@ def classify_structure(smiles):
     pathway_result = []
 
     # Voting on Answer
-    pathway_result, superclass_result, class_result, isglycoside = prediction_voting.vote_classification(n_path, 
-                                                                                                        n_class, 
-                                                                                                        n_super, 
+    pathway_result, superclass_result, class_result, isglycoside = prediction_voting.vote_classification(n_path,
+                                                                                                        n_class,
+                                                                                                        n_super,
                                                                                                         pred_class,
-                                                                                                        pred_super, 
-                                                                                                        path_from_class, 
-                                                                                                        path_from_superclass, 
-                                                                                                        isglycoside, 
+                                                                                                        pred_super,
+                                                                                                        path_from_class,
+                                                                                                        path_from_superclass,
+                                                                                                        isglycoside,
                                                                                                         ontology_dictionary)
-    
+
     return isglycoside, class_result, superclass_result, pathway_result, path_from_class, path_from_superclass, n_path, fp1, fp2
 
 
@@ -264,7 +265,7 @@ def _process_full_classification(smiles_string):
     respond_dict["superclass_results"] = superclass_results
     respond_dict["pathway_results"] = pathway_results
     respond_dict["isglycoside"] = isglycoside
-    
+
     respond_dict["fp1"] = fp1
     respond_dict["fp2"] = fp2
 
@@ -277,7 +278,7 @@ def _process_full_classification(smiles_string):
             )
     except:
         pass
-    
+
     return respond_dict
 
 
diff --git a/requirements.txt b/requirements.txt
index 6079eec..20edc56 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -19,8 +19,8 @@ itsdangerous==1.1.0
 Jinja2==2.11.2
 libarchive-c==2.8
 MarkupSafe==1.1.1
-numpy==1.18.3
-pandas==1.0.3
+numpy==1.19.3
+pandas==1.1.5
 plotly==4.6.0
 pycosat==0.6.3
 pycparser==2.19
@@ -30,9 +30,9 @@ python-dateutil==2.8.1
 pytz==2019.3
 requests==2.22.0
 retrying==1.3.3
-ruamel-yaml==0.15.46
-six==1.12.0
+ruamel-yaml==0.17.9
+six==1.15.0
 tqdm==4.32.1
 urllib3==1.24.2
 Werkzeug==1.0.1
-peewee
\ No newline at end of file
+peewee