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Updated get_manta_sv doesn't work for remote users #226

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rdmorin opened this issue Jun 30, 2023 · 1 comment

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rdmorin commented Jun 30, 2023

This issue is caused by a new path for the manta merges. These new merges need to be synced by the accompanying snakefile in order to fix this.

> all_svs = get_manta_sv()
[1] "missing:  /Users/rmorin/gambl_results/gambl/manta-2.3/merges/manta.genome--grch37.bedpe"
Error: '/Users/rmorin/gambl_results/gambl/manta-2.3/merges/manta.genome--grch37.bedpe' does not exist.

The text was updated successfully, but these errors were encountered:

rdmorin assigned mattssca

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mattssca commented Dec 18, 2023

Kostia will close this once he has pushed the updated snakefile from my closed branch.

mattssca assigned Kdreval and unassigned mattssca

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