From 15670e707b0c8b711935a7a873bc2adf850d33e0 Mon Sep 17 00:00:00 2001 From: Nitesh Turaga Date: Tue, 26 Oct 2021 16:49:54 +0000 Subject: [PATCH 1/9] bump x.y.z version to even y prior to creation of RELEASE_3_14 branch --- DESCRIPTION | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index 33a13be..bea5581 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: hypeR Title: An R Package For Geneset Enrichment Workflows -Version: 1.9.1 +Version: 1.10.0 Authors@R: c(person(given="Anthony", family="Federico", email="anfed@bu.edu", role=c("aut", "cre")), person(given="Stefano", family="Monti", email="smonti@bu.edu", From fb28216fb13d213e30f258b4be673494cdcc6f3e Mon Sep 17 00:00:00 2001 From: Nitesh Turaga Date: Tue, 26 Oct 2021 16:49:54 +0000 Subject: [PATCH 2/9] bump x.y.z version to odd y following creation of RELEASE_3_14 branch --- DESCRIPTION | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index bea5581..e6f7f66 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: hypeR Title: An R Package For Geneset Enrichment Workflows -Version: 1.10.0 +Version: 1.11.0 Authors@R: c(person(given="Anthony", family="Federico", email="anfed@bu.edu", role=c("aut", "cre")), person(given="Stefano", family="Monti", email="smonti@bu.edu", From be72ad016f5dccc256e91f14ea20d4545c56a096 Mon Sep 17 00:00:00 2001 From: Nitesh Turaga Date: Tue, 26 Apr 2022 15:53:35 +0000 Subject: [PATCH 3/9] bump x.y.z version to even y prior to creation of RELEASE_3_15 branch --- DESCRIPTION | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index e6f7f66..e26b2f6 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: hypeR Title: An R Package For Geneset Enrichment Workflows -Version: 1.11.0 +Version: 1.12.0 Authors@R: c(person(given="Anthony", family="Federico", email="anfed@bu.edu", role=c("aut", "cre")), person(given="Stefano", family="Monti", email="smonti@bu.edu", From bb36ba4769fa6b1c73fa4279310c770741ac04f8 Mon Sep 17 00:00:00 2001 From: Nitesh Turaga Date: Tue, 26 Apr 2022 15:53:35 +0000 Subject: [PATCH 4/9] bump x.y.z version to odd y following creation of RELEASE_3_15 branch --- DESCRIPTION | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index e26b2f6..407f727 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: hypeR Title: An R Package For Geneset Enrichment Workflows -Version: 1.12.0 +Version: 1.13.0 Authors@R: c(person(given="Anthony", family="Federico", email="anfed@bu.edu", role=c("aut", "cre")), person(given="Stefano", family="Monti", email="smonti@bu.edu", From 8787f212f82d3c861db6f52e58c08293bdd27daa Mon Sep 17 00:00:00 2001 From: J Wokaty Date: Tue, 1 Nov 2022 11:19:22 -0400 Subject: [PATCH 5/9] bump x.y.z version to even y prior to creation of RELEASE_3_16 branch --- DESCRIPTION | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index 407f727..fb6e897 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: hypeR Title: An R Package For Geneset Enrichment Workflows -Version: 1.13.0 +Version: 1.14.0 Authors@R: c(person(given="Anthony", family="Federico", email="anfed@bu.edu", role=c("aut", "cre")), person(given="Stefano", family="Monti", email="smonti@bu.edu", From c177f48423ba9b954968523b0cf0b2ff5e894467 Mon Sep 17 00:00:00 2001 From: J Wokaty Date: Tue, 1 Nov 2022 11:19:22 -0400 Subject: [PATCH 6/9] bump x.y.z version to odd y following creation of RELEASE_3_16 branch --- DESCRIPTION | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index fb6e897..690bafd 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: hypeR Title: An R Package For Geneset Enrichment Workflows -Version: 1.14.0 +Version: 1.15.0 Authors@R: c(person(given="Anthony", family="Federico", email="anfed@bu.edu", role=c("aut", "cre")), person(given="Stefano", family="Monti", email="smonti@bu.edu", From b25ccb4188a04af71a248aae8c508f6deab48eca Mon Sep 17 00:00:00 2001 From: J Wokaty Date: Tue, 25 Apr 2023 11:08:22 -0400 Subject: [PATCH 7/9] bump x.y.z version to even y prior to creation of RELEASE_3_17 branch --- DESCRIPTION | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index 690bafd..be123e3 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: hypeR Title: An R Package For Geneset Enrichment Workflows -Version: 1.15.0 +Version: 1.16.0 Authors@R: c(person(given="Anthony", family="Federico", email="anfed@bu.edu", role=c("aut", "cre")), person(given="Stefano", family="Monti", email="smonti@bu.edu", From bdeeb2329a74f5b17dfac0317838fe60c476cd24 Mon Sep 17 00:00:00 2001 From: J Wokaty Date: Tue, 25 Apr 2023 11:08:22 -0400 Subject: [PATCH 8/9] bump x.y.z version to odd y following creation of RELEASE_3_17 branch --- DESCRIPTION | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index be123e3..31e68b9 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: hypeR Title: An R Package For Geneset Enrichment Workflows -Version: 1.16.0 +Version: 1.17.0 Authors@R: c(person(given="Anthony", family="Federico", email="anfed@bu.edu", role=c("aut", "cre")), person(given="Stefano", family="Monti", email="smonti@bu.edu", From 52a51c11967d4f9690b0b57eb73fc76d90899f43 Mon Sep 17 00:00:00 2001 From: lshep Date: Tue, 27 Jun 2023 08:51:38 -0400 Subject: [PATCH 9/9] Deprecated - unresponsive --- DESCRIPTION | 3 ++- R/zzz.R | 7 +++++++ 2 files changed, 9 insertions(+), 1 deletion(-) create mode 100644 R/zzz.R diff --git a/DESCRIPTION b/DESCRIPTION index 31e68b9..9196045 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: hypeR Title: An R Package For Geneset Enrichment Workflows -Version: 1.17.0 +Version: 1.17.1 Authors@R: c(person(given="Anthony", family="Federico", email="anfed@bu.edu", role=c("aut", "cre")), person(given="Stefano", family="Monti", email="smonti@bu.edu", @@ -42,3 +42,4 @@ Suggests: biocViews: GeneSetEnrichment, Annotation, Pathways VignetteBuilder: knitr BugReports: https://github.com/montilab/hypeR/issues +PackageStatus: Deprecated diff --git a/R/zzz.R b/R/zzz.R new file mode 100644 index 0000000..1cda9f2 --- /dev/null +++ b/R/zzz.R @@ -0,0 +1,7 @@ +.onAttach <- function(libname, pkgname) { + msg <- sprintf( + "Package '%s' is deprecated and will be removed from Bioconductor + version %s", pkgname, "3.19") + .Deprecated(msg=paste(strwrap(msg, exdent=2), collapse="\n")) +} +