Skip to content

Commit

Permalink
Another comment
Browse files Browse the repository at this point in the history
  • Loading branch information
Justin Reese committed Aug 23, 2024
1 parent 7048ed0 commit e6f6cf0
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -119,7 +119,7 @@ The overall structure of the input directory should look like this with the cadd
```
### Setting up the testdata directory

The Exomiser plugin for PhEval accepts phenopackets and vcf files as an input for running Exomiser. The plugin can be run in `phenotype_only` mode, where only phenopackets are required as an input, however, this *must* be specified in the `config.yaml`.
The Exomiser plugin for PhEval accepts phenopackets and vcf files as an input for running Exomiser. The plugin can be run in `phenotype_only` mode, where only phenopackets are required as an input, however, this *must* be specified in the `config.yaml` by setting `variant_analysis: False`

The testdata directory should include subdirectories named `phenopackets` and `vcf` if running with variant prioritisation.

Expand Down Expand Up @@ -158,4 +158,4 @@ To fix the error, `setuptools` needs to be downgraded to version 66:
```shell
pip uninstall setuptools
pip install -U setuptools=="66"
```
```

0 comments on commit e6f6cf0

Please sign in to comment.