diff --git a/src/monarch_ingest/ingests/biogrid/biogrid_util.py b/src/biogrid_ingest/biogrid_util.py similarity index 100% rename from src/monarch_ingest/ingests/biogrid/biogrid_util.py rename to src/biogrid_ingest/biogrid_util.py diff --git a/src/biogrid_ingest/download.yaml b/src/biogrid_ingest/download.yaml index 3c1cee5..7cd7949 100644 --- a/src/biogrid_ingest/download.yaml +++ b/src/biogrid_ingest/download.yaml @@ -3,5 +3,5 @@ ### The configuration is used by `kghub-downloader`. ### For more information, see https://github.com/monarch-initiative/kghub-downloader --- -- url: https://raw.githubusercontent.com/monarch-initiative/cookiecutter-monarch-ingest/main/data/example_data.tsv - local_name: data/example_data.tsv +- url: https://downloads.thebiogrid.org/Download/BioGRID/Release-Archive/BIOGRID-4.4.226/BIOGRID-ALL-4.4.226.mitab.zip + local_name: data/biogrid/biogrid.mitab.zip diff --git a/src/biogrid_ingest/metadata.yaml b/src/biogrid_ingest/metadata.yaml new file mode 100644 index 0000000..1d82c6d --- /dev/null +++ b/src/biogrid_ingest/metadata.yaml @@ -0,0 +1,12 @@ +# Metadata for the project +# Uncomment and edit the fields you want to include in the metadata +# See metadata properties at https://koza.monarchinitiative.org/Ingests/source_config/ +name: 'biogrid' + +ingest_title: 'BioGRID' +ingest_url: 'https://thebiogrid.org/' +description: 'BioGRID: Database of Protein, Genetic and Chemical Interactions' +rights: 'https://wiki.thebiogrid.org/doku.php/partners' + +# source: 'Possibly replaced by provided_by' +provided_by: 'biogrid' diff --git a/src/monarch_ingest/ingests/biogrid/biogrid.py b/src/biogrid_ingest/transform.py similarity index 100% rename from src/monarch_ingest/ingests/biogrid/biogrid.py rename to src/biogrid_ingest/transform.py diff --git a/src/monarch_ingest/ingests/biogrid/biogrid.yaml b/src/biogrid_ingest/transform.yaml similarity index 100% rename from src/monarch_ingest/ingests/biogrid/biogrid.yaml rename to src/biogrid_ingest/transform.yaml diff --git a/src/monarch_ingest/ingests/biogrid/metadata.yaml b/src/monarch_ingest/ingests/biogrid/metadata.yaml deleted file mode 100644 index 37c66a2..0000000 --- a/src/monarch_ingest/ingests/biogrid/metadata.yaml +++ /dev/null @@ -1,7 +0,0 @@ -name: 'biogrid' - -dataset_description: - ingest_title: 'BioGRID' - ingest_url: 'https://thebiogrid.org/' - description: 'BioGRID: Database of Protein, Genetic and Chemical Interactions' - rights: 'https://wiki.thebiogrid.org/doku.php/partners'