Merge pull request #12 from bartcharbon/chore/bump_versions

Chore/bump versions

requirements.txt

@@ -1,8 +1,8 @@
 python==3.11.9
-pysam==0.22.0
-pybedtools==0.9.1
+pysam==0.22.1
+pybedtools==0.10.0
 numpy==1.26.4
-pathos==0.3.2
-scikit-learn==1.4.0
-scipy==1.13.0
-natsort==8.4.0
+pathos==0.3.3
+scikit-learn==1.5.2
+scipy==1.14.1
+natsort==8.4.0

setup.py

@@ -1,13 +1,12 @@
-import os
-import sys
-from setuptools import setup, find_packages
-#sys.path.append(os.path.dirname(os.path.abspath(__file__)) + '/stragler')
-
+from setuptools import setup
 from straglr import __version__
 
+##remove postfix here because setuptools does not like it
+version = __version__.split('-')[0]
+
 setup(
     name='straglr',
-    version=__version__,
+    version=version,
     description='Straglr',
     long_description='Short tandem repeat genotyping using long reads',
     url='https://github.com/bcgsc/straglr.git',
@@ -22,12 +21,12 @@
         ],
     packages=['straglr'],
     install_requires = [
-        'pysam==0.22.0',
-        'pybedtools==0.9.1',
+        'pysam==0.22.1',
+        'pybedtools==0.10.0',
         'numpy==1.26.4',
-        'pathos==0.3.2',
-        'scikit-learn==1.4.0',
-        'scipy==1.13.0',
+        'pathos==0.3.3',
+        'scikit-learn==1.5.2',
+        'scipy==1.14.1',
         'natsort==8.4.0'
         ],
     entry_points ={

straglr/version.py

@@ -1 +1 @@
-__version__ = "1.4.4"
+__version__ = "1.4.5-vip-v1"