diff --git a/compute5/NIPT/parameters.csv b/compute5/NIPT/parameters.csv index ac35a67a..163a709a 100755 --- a/compute5/NIPT/parameters.csv +++ b/compute5/NIPT/parameters.csv @@ -8,19 +8,18 @@ checkStage,module list ### Tool versions #### rVersion,3.2.1-${toolChain} -sambambaVersion,v0.5.9-${toolChain} +sambambaVersion,v0.6.4-${toolChain} ngsUtilsVersion,16.05.1 ppvForNiptVersion,0.1-${toolChain} wkHtmlToPdfVersion,0.11.0_rc1-static-amd64 -tmpDataDir,${workDir}/${tmpName}/ -sambambaTool,sambamba_v0.5.9 +sambambaTool,sambamba_v0.6.4 dataDir,/apps/data/ intermediateDir,${tmpDataDir}/tmp/${project}/${runid} inputDataTmp,/groups/umcg-gd/${tmpName}/inputData/${project} projectsDir,${tmpDataDir}/projects/${project}/${runid} resultsSampleDir,${projectsDir}/results/${DNA_nr}_${externalSampleID}/ - +tmpDataDir,${workDir}/${tmpName}/ utrechtDir,/groups/umcg-umcu/${tmpName}/NIPT/${ProjectUtrecht}/ inputUtrechtDataRawSample,${inputDataTmp}/${externalSampleID}_dedup.bam inputDataRawSample,${inputDataTmp}/${externalSampleID}_dedup.filtered.bam diff --git a/compute5/NIPT/parameters_zinc-finger.csv b/compute5/NIPT/parameters_zinc-finger.csv index 9054fd72..5a9d70df 100644 --- a/compute5/NIPT/parameters_zinc-finger.csv +++ b/compute5/NIPT/parameters_zinc-finger.csv @@ -3,4 +3,4 @@ tmpName,tmp05 prmName,prm02 root,/apps/ workDir,/groups/umcg-gd/ -toolChain,goolf-1.7.20 +toolChain,foss-2015b