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Undeclared parameter exception is not case sensitive when scanning steps.
my error:
Exception in thread "main" java.lang.Exception: Parameter 'pipelineutilMod' used in steps [Lofreq, Mutect2Pon, MergeMutect2PonVariantsByProject, Mutect2, Lancet, Freebayes, MergeMutect2VariantsByProject, CombineVariants, VariantAnnotation, CustTumorNormalAnnotations, IndelVariantsToTable, IndelVariantsToMinTable, SNVVariantsToTable, SNVVariantsToMinTable, IndelVariantsToDescriptionTable, SNVVariantsToDescriptionTable, TablesToSplitTables, PlotGenome, MergeSegFiles] does not have a value in any of the parameter files
what it should output
Exception in thread "main" java.lang.Exception: Parameter 'pipelineutilMod' used in steps [Lofreq] does not have a value in any of the parameter files
Undeclared parameter exception is not case sensitive when scanning steps.
my error:
what it should output
ez replication:
create #string INPUT in the step 2 in this example:
https://rawgit.com/molgenis/molgenis-compute/master/molgenis-compute-core/README.html
this will produce something like
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