Folding list work around does not work in all situations

[npklein]

There is a weird thing with folding of lists where

#list phaserOutputVcf
#string CHR

would multiple every value in variable by the number of chromosomes. Work around was to do

#list phaserOutputVcf
#list CHR
#string CHR

I now have a similar problem where a variable gets multiplied too many times. However, when using the work around, phaserOutputVcf does not get connected to the environment. Attached folder contains two generating scripts, generateJobs_misses_parameter.sh which shows phaserOutputVcf not getting connected to the environment, and generateJobs_too_much_folding.sh where phaserOutputVcf gets multiplied too many times.

tmp_test.zip