Spot distribution along z-axis

[tischi]

@constantinpape It looks like that there are no spots at a z-coordinate of 3, but only at 2, 4 and 5. Is that correct?

[constantinpape]

The spots are only at z = 2 and 5:

python -c "import pandas; print(pandas.unique(pandas.read_csv('data/pos42-spatial-transcriptomics/tables/transcriptome/default.tsv', sep='\t')['z'])"

[2., 5.]

[tischi]

ok! sucks a bit, because if one focuses on the spots it goes on the middle where there is nothing ;-)

[constantinpape]

ok! sucks a bit, because if one focuses on the spots it goes on the middle where there is nothing ;-)

You mean focusing on an individual spot? (Then I don't understand what you mean / the behavior sounds wrong.)
Or focusing on the full spot source? (Then: yeah I guess that sucks a bit, but it's the data I got here....)