From a54da022c528dc8b96e4525c289b76304a704198 Mon Sep 17 00:00:00 2001 From: "renovate[bot]" <29139614+renovate[bot]@users.noreply.github.com> Date: Tue, 22 Oct 2024 08:55:14 +0000 Subject: [PATCH] chore(deps): update all non-major dependencies --- .config/dotnet-tools.json | 2 +- charts/recruit/Chart.lock | 10 +- charts/recruit/Chart.yaml | 6 +- charts/recruit/values.yaml | 2 +- docker-compose/docker-compose.probe.yaml | 2 +- docker-compose/docker-compose.staging.yaml | 4 +- src/Dockerfile | 2 +- src/buildSrc/build.gradle | 6 +- ...ecruit.java-application-conventions.gradle | 16 +- src/gradle/wrapper/gradle-wrapper.jar | Bin 43504 -> 43583 bytes src/gradle/wrapper/gradle-wrapper.properties | 2 +- src/hack/docker-compose.yaml | 8 +- src/list/Dockerfile | 2 +- .../frontend/deploy/docker-compose.dev.yml | 8 +- src/list/frontend/package.json | 20 +- .../frontend/tests/e2e/cypress.Dockerfile | 2 +- .../frontend/tests/e2e/docker-compose.yaml | 6 +- src/list/package-lock.json | 981 +++++++++++++----- src/list/server/package.json | 32 +- src/notify/build.gradle | 2 +- src/notify/tests/e2e/docker-compose.yaml | 4 +- src/query/build.gradle | 26 +- src/query/tests/e2e/Dockerfile | 2 +- src/query/tests/e2e/docker-compose.yaml | 4 +- src/query/tests/e2e/requirements.in | 4 +- src/query/tests/e2e/requirements.txt | 4 +- tests/chaos/tester/Dockerfile | 2 +- tests/chaos/tester/tester.csproj | 4 +- 28 files changed, 789 insertions(+), 374 deletions(-) diff --git a/.config/dotnet-tools.json b/.config/dotnet-tools.json index 273cb756..decf14ab 100644 --- a/.config/dotnet-tools.json +++ b/.config/dotnet-tools.json @@ -3,7 +3,7 @@ "isRoot": true, "tools": { "csharpier": { - "version": "0.28.2", + "version": "0.29.2", "commands": ["dotnet-csharpier"] } } diff --git a/charts/recruit/Chart.lock b/charts/recruit/Chart.lock index 00f6ebf4..32f3e255 100644 --- a/charts/recruit/Chart.lock +++ b/charts/recruit/Chart.lock @@ -1,18 +1,18 @@ dependencies: - name: hapi-fhir-jpaserver repository: https://hapifhir.github.io/hapi-fhir-jpaserver-starter - version: 0.17.0 + version: 0.17.1 - name: mailhog repository: https://codecentric.github.io/helm-charts version: 5.2.3 - name: ohdsi repository: oci://ghcr.io/chgl/charts - version: 0.24.0 + version: 0.24.12 - name: postgresql repository: oci://registry-1.docker.io/bitnamicharts version: 13.2.27 - name: fhir-pseudonymizer repository: oci://ghcr.io/miracum/charts - version: 0.7.1 -digest: sha256:894a9ff4a95903742b8fa297e10cf976d2fabfb3af8cb0417be14a9b1d199596 -generated: "2024-07-31T19:10:34.104012744Z" + version: 0.7.15 +digest: sha256:339f783e0f48e30e27a655edbe42af4d6d3c09efcec91063a3ceacae577dbb6a +generated: "2024-10-22T08:51:43.274845629Z" diff --git a/charts/recruit/Chart.yaml b/charts/recruit/Chart.yaml index 1897f7ac..7f3d3860 100644 --- a/charts/recruit/Chart.yaml +++ b/charts/recruit/Chart.yaml @@ -22,7 +22,7 @@ dependencies: alias: fhirserver name: hapi-fhir-jpaserver repository: https://hapifhir.github.io/hapi-fhir-jpaserver-starter - version: 0.17.0 + version: 0.17.1 - condition: mailhog.enabled name: mailhog repository: https://codecentric.github.io/helm-charts @@ -30,14 +30,14 @@ dependencies: - condition: ohdsi.enabled name: ohdsi repository: oci://ghcr.io/chgl/charts - version: 0.24.0 + version: 0.24.12 - name: postgresql version: 13.2.27 repository: oci://registry-1.docker.io/bitnamicharts condition: postgresql.enabled - condition: fhir-pseudonymizer.enabled name: fhir-pseudonymizer - version: 0.7.1 + version: 0.7.15 repository: oci://ghcr.io/miracum/charts # x-release-please-start-version version: 10.1.12 diff --git a/charts/recruit/values.yaml b/charts/recruit/values.yaml index 4a675917..9e90e8c6 100644 --- a/charts/recruit/values.yaml +++ b/charts/recruit/values.yaml @@ -677,7 +677,7 @@ curl: # +doc-gen:ignore image: registry: docker.io repository: curlimages/curl - tag: 8.9.1@sha256:8addc281f0ea517409209f76832b6ddc2cabc3264feb1ebbec2a2521ffad24e4 + tag: 8.10.1@sha256:d9b4541e214bcd85196d6e92e2753ac6d0ea699f0af5741f8c6cccbfcf00ef4b broadseaAtlasdb: # -- whether to deploy the OHDSI Broadsea Atlasdb () diff --git a/docker-compose/docker-compose.probe.yaml b/docker-compose/docker-compose.probe.yaml index 0b27b43a..bb002a1b 100644 --- a/docker-compose/docker-compose.probe.yaml +++ b/docker-compose/docker-compose.probe.yaml @@ -1,6 +1,6 @@ services: health-probes: - image: docker.io/curlimages/curl:8.9.1@sha256:8addc281f0ea517409209f76832b6ddc2cabc3264feb1ebbec2a2521ffad24e4 + image: docker.io/curlimages/curl:8.10.1@sha256:d9b4541e214bcd85196d6e92e2753ac6d0ea699f0af5741f8c6cccbfcf00ef4b ipc: private security_opt: - "no-new-privileges:true" diff --git a/docker-compose/docker-compose.staging.yaml b/docker-compose/docker-compose.staging.yaml index c6054f02..711bcb3a 100644 --- a/docker-compose/docker-compose.staging.yaml +++ b/docker-compose/docker-compose.staging.yaml @@ -1,6 +1,6 @@ services: traefik: - image: docker.io/library/traefik:v3.1.1@sha256:9f68c02f50786068f6687128ae8e8632b0bc24bc806705c9ff9fcbe9e38d19ae + image: docker.io/library/traefik:v3.1.6@sha256:f703a2ac2ddf75f6e06c9cccac7f158765e2ab42d642b04e79e2e3d7355c2ddc restart: unless-stopped ipc: none security_opt: @@ -102,7 +102,7 @@ services: - "traefik.http.routers.ohdsi-atlas.entrypoints=web" fhir: - image: docker.io/hapiproject/hapi:v7.2.0@sha256:9bcafa8342b572eee248cb7c48c496863d352bbd0347e1d98ea238d09620e89b + image: docker.io/hapiproject/hapi:v7.4.0@sha256:f34b41f5002665f384cf344da2d8e653025bd095aa37aa6f5a9d6dc0dac75684 restart: unless-stopped cap_drop: - ALL diff --git a/src/Dockerfile b/src/Dockerfile index bd4ec622..55283634 100644 --- a/src/Dockerfile +++ b/src/Dockerfile @@ -1,4 +1,4 @@ -FROM docker.io/library/gradle:8.9.0-jdk21@sha256:0c13b320f227a67179fca5d5746ab889c011ed143023c80c5fc8520609fe427f AS build +FROM docker.io/library/gradle:8.10.2-jdk21@sha256:68b2622349ffd414aee2f94901b2d0f6e7b309cfb5550904520e75f5e5ef1053 AS build WORKDIR /home/gradle/project ARG OPENTELEMETRY_JAVA_AGENT_VERSION=2.4.0 RUN wget --quiet "https://github.com/open-telemetry/opentelemetry-java-instrumentation/releases/download/v${OPENTELEMETRY_JAVA_AGENT_VERSION}/opentelemetry-javaagent.jar" diff --git a/src/buildSrc/build.gradle b/src/buildSrc/build.gradle index 78840be8..be7580bf 100644 --- a/src/buildSrc/build.gradle +++ b/src/buildSrc/build.gradle @@ -15,10 +15,10 @@ repositories { } dependencies { - implementation 'org.springframework.boot:spring-boot-gradle-plugin:3.3.2' + implementation 'org.springframework.boot:spring-boot-gradle-plugin:3.3.4' implementation 'io.spring.gradle:dependency-management-plugin:1.1.6' - implementation 'com.google.cloud.tools:jib-gradle-plugin:3.4.3' + implementation 'com.google.cloud.tools:jib-gradle-plugin:3.4.4' implementation 'com.diffplug.spotless:spotless-plugin-gradle:6.25.0' - implementation 'io.freefair.gradle:lombok-plugin:8.6' + implementation 'io.freefair.gradle:lombok-plugin:8.10.2' implementation 'de.undercouch:gradle-download-task:5.6.0' } diff --git a/src/buildSrc/src/main/groovy/org.miracum.recruit.java-application-conventions.gradle b/src/buildSrc/src/main/groovy/org.miracum.recruit.java-application-conventions.gradle index ed45752d..b9f79c14 100644 --- a/src/buildSrc/src/main/groovy/org.miracum.recruit.java-application-conventions.gradle +++ b/src/buildSrc/src/main/groovy/org.miracum.recruit.java-application-conventions.gradle @@ -37,19 +37,19 @@ dependencies { implementation 'org.springframework.boot:spring-boot-starter-jdbc' implementation 'org.springframework.boot:spring-boot-starter-data-jdbc' - implementation 'ca.uhn.hapi.fhir:hapi-fhir-client:7.2.2' - implementation 'ca.uhn.hapi.fhir:hapi-fhir-base:7.2.2' - implementation 'ca.uhn.hapi.fhir:hapi-fhir-structures-r4:7.2.2' - implementation 'ca.uhn.hapi.fhir:hapi-fhir-client-okhttp:7.2.2' + implementation 'ca.uhn.hapi.fhir:hapi-fhir-client:7.4.4' + implementation 'ca.uhn.hapi.fhir:hapi-fhir-base:7.4.4' + implementation 'ca.uhn.hapi.fhir:hapi-fhir-structures-r4:7.4.4' + implementation 'ca.uhn.hapi.fhir:hapi-fhir-client-okhttp:7.4.4' implementation 'com.squareup.okhttp3:okhttp:4.12.0' implementation 'net.logstash.logback:logstash-logback-encoder:8.0' - implementation 'org.postgresql:postgresql:42.7.3' + implementation 'org.postgresql:postgresql:42.7.4' - implementation 'io.micrometer:micrometer-registry-prometheus:1.13.2' - implementation 'io.micrometer:micrometer-core:1.13.2' + implementation 'io.micrometer:micrometer-registry-prometheus:1.13.6' + implementation 'io.micrometer:micrometer-core:1.13.6' developmentOnly 'org.springframework.boot:spring-boot-devtools' @@ -101,7 +101,7 @@ spotless { } checkstyle { - toolVersion '10.17.0' + toolVersion '10.18.2' configFile = file('../config/checkstyle/checkstyle.xml') } diff --git a/src/gradle/wrapper/gradle-wrapper.jar b/src/gradle/wrapper/gradle-wrapper.jar index 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zP)i30KR&5vs15)C+8dM66&$k~i|ZT;KR&5vs15)C+8dJ(sAmGPijyIz6_bsqKLSFH zlOd=TljEpH0>h4zA*dCTK&emy#FCRCs1=i^sZ9bFmXjf<6_X39E(XY)00000#N437 diff --git a/src/gradle/wrapper/gradle-wrapper.properties b/src/gradle/wrapper/gradle-wrapper.properties index 09523c0e..df97d72b 100644 --- a/src/gradle/wrapper/gradle-wrapper.properties +++ b/src/gradle/wrapper/gradle-wrapper.properties @@ -1,6 +1,6 @@ distributionBase=GRADLE_USER_HOME distributionPath=wrapper/dists -distributionUrl=https\://services.gradle.org/distributions/gradle-8.9-bin.zip +distributionUrl=https\://services.gradle.org/distributions/gradle-8.10.2-bin.zip networkTimeout=10000 validateDistributionUrl=true zipStoreBase=GRADLE_USER_HOME diff --git a/src/hack/docker-compose.yaml b/src/hack/docker-compose.yaml index 82885404..e89204f6 100644 --- a/src/hack/docker-compose.yaml +++ b/src/hack/docker-compose.yaml @@ -1,6 +1,6 @@ services: traefik: - image: docker.io/library/traefik:v3.1.1@sha256:9f68c02f50786068f6687128ae8e8632b0bc24bc806705c9ff9fcbe9e38d19ae + image: docker.io/library/traefik:v3.1.6@sha256:f703a2ac2ddf75f6e06c9cccac7f158765e2ab42d642b04e79e2e3d7355c2ddc restart: unless-stopped ipc: none security_opt: @@ -23,7 +23,7 @@ services: memory: 128m fhir: - image: docker.io/hapiproject/hapi:v7.2.0@sha256:9bcafa8342b572eee248cb7c48c496863d352bbd0347e1d98ea238d09620e89b + image: docker.io/hapiproject/hapi:v7.4.0@sha256:f34b41f5002665f384cf344da2d8e653025bd095aa37aa6f5a9d6dc0dac75684 restart: unless-stopped cap_drop: - ALL @@ -79,7 +79,7 @@ services: POSTGRES_DB: fhir broadsea-atlasdb: - image: docker.io/ohdsi/broadsea-atlasdb:2.1.0@sha256:99b4bd5515b3d82adb5bac9b14558b434df55fced6c194c965e3fb1371cb36c5 + image: docker.io/ohdsi/broadsea-atlasdb:2.2.0@sha256:ec23023c756ed32426c922a2565af26718100e8cef09c927d0a7b9f07b204935 ports: - "127.0.0.1:25432:5432" @@ -270,7 +270,7 @@ services: OTEL_EXPORTER_JAEGER_ENDPOINT: "http://jaeger:14250" jaeger: - image: docker.io/jaegertracing/all-in-one:1.59.0@sha256:e369bd9a8e4a212bfed67aaff59b77ce0676df32828aaccca468a866efcb732b + image: docker.io/jaegertracing/all-in-one:1.62.0@sha256:836e9b69c88afbedf7683ea7162e179de63b1f981662e83f5ebb68badadc710f ports: - "127.0.0.1:16686:16686" - "127.0.0.1:6831:6831/udp" diff --git a/src/list/Dockerfile b/src/list/Dockerfile index 65ee48b6..12217f4e 100644 --- a/src/list/Dockerfile +++ b/src/list/Dockerfile @@ -1,4 +1,4 @@ -FROM docker.io/library/node:22.5.1-slim@sha256:2fb92fe9d7350866a73c5cc311c1a19919ffd47e8592d4233374ee330e3bdb1e AS base +FROM docker.io/library/node:22.10.0-slim@sha256:e09207f9eca57bc0f93f35f5e252f46ce4c8f86cf2ab4ede5e2a75d1dbc9ae74 AS base WORKDIR /app COPY package.json ./ diff --git a/src/list/frontend/deploy/docker-compose.dev.yml b/src/list/frontend/deploy/docker-compose.dev.yml index 05ef7487..27bead62 100644 --- a/src/list/frontend/deploy/docker-compose.dev.yml +++ b/src/list/frontend/deploy/docker-compose.dev.yml @@ -2,7 +2,7 @@ version: "3.9" services: fhir: - image: docker.io/hapiproject/hapi:v7.2.0@sha256:9bcafa8342b572eee248cb7c48c496863d352bbd0347e1d98ea238d09620e89b + image: docker.io/hapiproject/hapi:v7.4.0@sha256:f34b41f5002665f384cf344da2d8e653025bd095aa37aa6f5a9d6dc0dac75684 environment: HAPI_FHIR_VALIDATION_REQUESTS_ENABLED: "true" HAPI_FHIR_SUBSCRIPTION_RESTHOOK_ENABLED: "true" @@ -14,7 +14,7 @@ services: - 8082:8080 loader: - image: docker.io/curlimages/curl:8.9.1@sha256:8addc281f0ea517409209f76832b6ddc2cabc3264feb1ebbec2a2521ffad24e4 + image: docker.io/curlimages/curl:8.10.1@sha256:d9b4541e214bcd85196d6e92e2753ac6d0ea699f0af5741f8c6cccbfcf00ef4b command: > sh -c "curl -X POST -H 'Content-Type:application/fhir+json' --retry-connrefused --connect-timeout 30 --max-time 60 --retry 5 --retry-delay 15 --data '@/data/sample-record-1.json' http://fhir:8080/fhir && curl -X POST -H 'Content-Type:application/fhir+json' --retry-connrefused --connect-timeout 30 --max-time 60 --retry 5 --retry-delay 15 --data '@/data/sample-record-2.json' http://fhir:8080/fhir && @@ -26,7 +26,7 @@ services: - fhir jaeger: - image: docker.io/jaegertracing/all-in-one:1.59@sha256:e369bd9a8e4a212bfed67aaff59b77ce0676df32828aaccca468a866efcb732b + image: docker.io/jaegertracing/all-in-one:1.60@sha256:4fd2d70fa347d6a47e79fcb06b1c177e6079f92cba88b083153d56263082135e environment: COLLECTOR_OTLP_ENABLED: "true" ports: @@ -51,7 +51,7 @@ services: - 8083:8080 fhir-pseudonymizer: - image: ghcr.io/miracum/fhir-pseudonymizer:v2.21.13@sha256:0b922e09ef628d2f99a18fffd237ba261a4e6be87f33aea76e770a0102b3bf58 + image: ghcr.io/miracum/fhir-pseudonymizer:v2.22.0@sha256:d999debd8191486b14f18fa509f2a89f4148d8a0b7eca0f440c6f41f9e51708e environment: APIKEY: "fhir-pseudonymizer-api-key" TRACING__ENABLED: "true" diff --git a/src/list/frontend/package.json b/src/list/frontend/package.json index 91f4cd43..53bbe28e 100644 --- a/src/list/frontend/package.json +++ b/src/list/frontend/package.json @@ -14,18 +14,18 @@ "@fortawesome/fontawesome-svg-core": "1.2.36", "@fortawesome/free-solid-svg-icons": "5.15.4", "@fortawesome/vue-fontawesome": "2.0.10", - "axios": "1.7.4", + "axios": "1.7.7", "buefy": "0.9.29", - "core-js": "3.37.1", + "core-js": "3.38.1", "csv-stringify": "6.5.1", - "fhirclient": "2.5.3", - "fhirpath": "3.14.1", + "fhirclient": "2.5.4", + "fhirpath": "3.15.2", "vue": "2.7.16", "vue-router": "3.6.5", "vuejs-logger": "1.5.5" }, "devDependencies": { - "@babel/eslint-parser": "7.25.1", + "@babel/eslint-parser": "7.25.8", "@vue/cli-plugin-babel": "5.0.8", "@vue/cli-plugin-eslint": "5.0.8", "@vue/cli-plugin-router": "5.0.8", @@ -34,15 +34,15 @@ "@vue/eslint-config-airbnb": "6.0.0", "@vue/test-utils": "2.4.6", "@vue/vue2-jest": "29.2.2", - "cypress-keycloak": "2.0.1", - "eslint": "8.57.0", + "cypress-keycloak": "2.0.2", + "eslint": "8.57.1", "eslint-config-prettier": "9.1.0", - "eslint-plugin-vue": "9.27.0", + "eslint-plugin-vue": "9.29.1", "jest": "29.7.0", - "sass": "1.77.8", + "sass": "1.80.3", "sass-loader": "14.2.1", "vue-template-compiler": "2.7.16", - "pino": "9.3.2" + "pino": "9.5.0" }, "optionalDependencies": { "@vue/cli-plugin-e2e-cypress": "5.0.8", diff --git a/src/list/frontend/tests/e2e/cypress.Dockerfile b/src/list/frontend/tests/e2e/cypress.Dockerfile index 8c2014f8..6f224464 100644 --- a/src/list/frontend/tests/e2e/cypress.Dockerfile +++ b/src/list/frontend/tests/e2e/cypress.Dockerfile @@ -1,4 +1,4 @@ -FROM docker.io/cypress/included:13.13.2@sha256:dd58e9bd00587ee6de52bef9400c159048e9e4eb82c67a73d1f54c95229b6677 +FROM docker.io/cypress/included:13.15.0@sha256:d2123cf33edc48d3e3f30bd24231459ca5291dcf66b91b0b30b50ffe568eb707 WORKDIR /root ENV CI=1 diff --git a/src/list/frontend/tests/e2e/docker-compose.yaml b/src/list/frontend/tests/e2e/docker-compose.yaml index 700ff217..90f54106 100644 --- a/src/list/frontend/tests/e2e/docker-compose.yaml +++ b/src/list/frontend/tests/e2e/docker-compose.yaml @@ -34,7 +34,7 @@ services: - ${PWD}/frontend:/root/e2e fhir: - image: docker.io/hapiproject/hapi:v7.2.0@sha256:9bcafa8342b572eee248cb7c48c496863d352bbd0347e1d98ea238d09620e89b + image: docker.io/hapiproject/hapi:v7.4.0@sha256:f34b41f5002665f384cf344da2d8e653025bd095aa37aa6f5a9d6dc0dac75684 environment: HAPI_FHIR_VALIDATION_REQUESTS_ENABLED: "true" HAPI_FHIR_SUBSCRIPTION_RESTHOOK_ENABLED: "true" @@ -42,7 +42,7 @@ services: HAPI_FHIR_CORS_ALLOWED_ORIGIN: "http://list:8080" loader: - image: docker.io/curlimages/curl:8.9.1@sha256:8addc281f0ea517409209f76832b6ddc2cabc3264feb1ebbec2a2521ffad24e4 + image: docker.io/curlimages/curl:8.10.1@sha256:d9b4541e214bcd85196d6e92e2753ac6d0ea699f0af5741f8c6cccbfcf00ef4b command: > sh -c "curl -X POST -H 'Content-Type: application/fhir+json' --retry-connrefused --connect-timeout 30 --max-time 60 --retry 10 --retry-delay 15 --data '@/data/sample-record-1.json' http://fhir:8080/fhir && curl -X POST -H 'Content-Type: application/fhir+json' --retry-connrefused --connect-timeout 30 --max-time 60 --retry 10 --retry-delay 15 --data '@/data/sample-record-2.json' http://fhir:8080/fhir && @@ -70,4 +70,4 @@ services: - ${PWD}/frontend/deploy/data/aio-export.json:/tmp/realm.json:ro jaeger: - image: docker.io/jaegertracing/all-in-one:1.59@sha256:e369bd9a8e4a212bfed67aaff59b77ce0676df32828aaccca468a866efcb732b + image: docker.io/jaegertracing/all-in-one:1.60@sha256:4fd2d70fa347d6a47e79fcb06b1c177e6079f92cba88b083153d56263082135e diff --git a/src/list/package-lock.json b/src/list/package-lock.json index 9bba5738..333dd55c 100644 --- a/src/list/package-lock.json +++ b/src/list/package-lock.json @@ -20,18 +20,18 @@ "@fortawesome/fontawesome-svg-core": "1.2.36", "@fortawesome/free-solid-svg-icons": "5.15.4", "@fortawesome/vue-fontawesome": "2.0.10", - "axios": "1.7.4", + "axios": "1.7.7", "buefy": "0.9.29", - "core-js": "3.37.1", + "core-js": "3.38.1", "csv-stringify": "6.5.1", - "fhirclient": "2.5.3", - "fhirpath": "3.14.1", + "fhirclient": "2.5.4", + "fhirpath": "3.15.2", "vue": "2.7.16", "vue-router": "3.6.5", "vuejs-logger": "1.5.5" }, "devDependencies": { - "@babel/eslint-parser": "7.25.1", + "@babel/eslint-parser": "7.25.8", "@vue/cli-plugin-babel": "5.0.8", "@vue/cli-plugin-eslint": "5.0.8", "@vue/cli-plugin-router": "5.0.8", @@ -40,13 +40,13 @@ "@vue/eslint-config-airbnb": "6.0.0", "@vue/test-utils": "2.4.6", "@vue/vue2-jest": "29.2.2", - "cypress-keycloak": "2.0.1", - "eslint": "8.57.0", + "cypress-keycloak": "2.0.2", + "eslint": "8.57.1", "eslint-config-prettier": "9.1.0", - "eslint-plugin-vue": "9.27.0", + "eslint-plugin-vue": "9.29.1", "jest": "29.7.0", - "pino": "9.3.2", - "sass": "1.77.8", + "pino": "9.5.0", + "sass": "1.80.3", "sass-loader": "14.2.1", "vue-template-compiler": "2.7.16" }, @@ -419,9 +419,9 @@ } }, "node_modules/@babel/eslint-parser": { - "version": "7.25.1", - "resolved": "https://registry.npmjs.org/@babel/eslint-parser/-/eslint-parser-7.25.1.tgz", - "integrity": "sha512-Y956ghgTT4j7rKesabkh5WeqgSFZVFwaPR0IWFm7KFHFmmJ4afbG49SmfW4S+GyRPx0Dy5jxEWA5t0rpxfElWg==", + "version": "7.25.8", + "resolved": "https://registry.npmjs.org/@babel/eslint-parser/-/eslint-parser-7.25.8.tgz", + "integrity": "sha512-Po3VLMN7fJtv0nsOjBDSbO1J71UhzShE9MuOSkWEV9IZQXzhZklYtzKZ8ZD/Ij3a0JBv1AG3Ny2L3jvAHQVOGg==", "dev": true, "license": "MIT", "dependencies": { @@ -2494,10 +2494,11 @@ } }, "node_modules/@eslint/js": { - "version": "8.57.0", - "resolved": "https://registry.npmjs.org/@eslint/js/-/js-8.57.0.tgz", - "integrity": "sha512-Ys+3g2TaW7gADOJzPt83SJtCDhMjndcDMFVQ/Tj9iA1BfJzFKD9mAUXT3OenpuPHbI6P/myECxRJrofUsDx/5g==", + "version": "8.57.1", + "resolved": "https://registry.npmjs.org/@eslint/js/-/js-8.57.1.tgz", + "integrity": "sha512-d9zaMRSTIKDLhctzH12MtXvJKSSUhaHcjV+2Z+GK+EEY7XKpP5yR4x+N3TAcHTcu963nIr+TMcCb4DBCYX1z6Q==", "devOptional": true, + "license": "MIT", "engines": { "node": "^12.22.0 || ^14.17.0 || >=16.0.0" } @@ -4528,12 +4529,14 @@ } }, "node_modules/@humanwhocodes/config-array": { - "version": "0.11.14", - "resolved": "https://registry.npmjs.org/@humanwhocodes/config-array/-/config-array-0.11.14.tgz", - "integrity": "sha512-3T8LkOmg45BV5FICb15QQMsyUSWrQ8AygVfC7ZG32zOalnqrilm018ZVCw0eapXux8FtA33q8PSRSstjee3jSg==", + "version": "0.13.0", + "resolved": "https://registry.npmjs.org/@humanwhocodes/config-array/-/config-array-0.13.0.tgz", + "integrity": "sha512-DZLEEqFWQFiyK6h5YIeynKx7JlvCYWL0cImfSRXZ9l4Sg2efkFGTuFf6vzXjK1cq6IYkU+Eg/JizXw+TD2vRNw==", + "deprecated": "Use @eslint/config-array instead", "devOptional": true, + "license": "Apache-2.0", "dependencies": { - "@humanwhocodes/object-schema": "^2.0.2", + "@humanwhocodes/object-schema": "^2.0.3", "debug": "^4.3.1", "minimatch": "^3.0.5" }, @@ -4554,10 +4557,12 @@ } }, "node_modules/@humanwhocodes/object-schema": { - "version": "2.0.2", - "resolved": "https://registry.npmjs.org/@humanwhocodes/object-schema/-/object-schema-2.0.2.tgz", - "integrity": "sha512-6EwiSjwWYP7pTckG6I5eyFANjPhmPjUX9JRLUSfNPC7FX7zK9gyZAfUEaECL6ALTpGX5AjnBq3C9XmVWPitNpw==", - "devOptional": true + "version": "2.0.3", + "resolved": "https://registry.npmjs.org/@humanwhocodes/object-schema/-/object-schema-2.0.3.tgz", + "integrity": "sha512-93zYdMES/c1D69yZiKDBj0V24vqNzB/koF26KPaagAfd3P/4gUlh3Dys5ogAK+Exi9QyzlD8x/08Zt7wIKcDcA==", + "deprecated": "Use @eslint/object-schema instead", + "devOptional": true, + "license": "BSD-3-Clause" }, "node_modules/@isaacs/cliui": { "version": "8.0.2", @@ -5539,9 +5544,9 @@ } }, "node_modules/@opentelemetry/api-logs": { - "version": "0.52.1", - "resolved": "https://registry.npmjs.org/@opentelemetry/api-logs/-/api-logs-0.52.1.tgz", - "integrity": "sha512-qnSqB2DQ9TPP96dl8cDubDvrUyWc0/sK81xHTK8eSUspzDM3bsewX903qclQFvVhgStjRWdC5bLb3kQqMkfV5A==", + "version": "0.53.0", + "resolved": "https://registry.npmjs.org/@opentelemetry/api-logs/-/api-logs-0.53.0.tgz", + "integrity": 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"license": "MIT" + "license": "MIT", + "optional": true, + "peer": true }, "node_modules/send/node_modules/mime": { "version": "1.6.0", "license": "MIT", + "optional": true, + "peer": true, "bin": { "mime": "cli.js" }, @@ -27115,10 +27465,6 @@ "node": ">=4" } }, - "node_modules/send/node_modules/ms": { - "version": "2.1.3", - "license": "MIT" - }, "node_modules/serialize-error": { "version": "6.0.0", "license": "MIT", @@ -27225,20 +27571,89 @@ } }, "node_modules/serve-static": { - "version": "1.16.0", - "resolved": "https://registry.npmjs.org/serve-static/-/serve-static-1.16.0.tgz", - "integrity": "sha512-pDLK8zwl2eKaYrs8mrPZBJua4hMplRWJ1tIFksVC3FtBEBnl8dxgeHtsaMS8DhS9i4fLObaon6ABoc4/hQGdPA==", + "version": "1.16.2", + "resolved": "https://registry.npmjs.org/serve-static/-/serve-static-1.16.2.tgz", + "integrity": "sha512-VqpjJZKadQB/PEbEwvFdO43Ax5dFBZ2UECszz8bQ7pi7wt//PWe1P6MN7eCnjsatYtBT6EuiClbjSWP2WrIoTw==", "license": "MIT", "dependencies": { - "encodeurl": "~1.0.2", + "encodeurl": "~2.0.0", "escape-html": "~1.0.3", "parseurl": "~1.3.3", - "send": "0.18.0" + "send": "0.19.0" + }, + "engines": { + "node": ">= 0.8.0" + } + }, + "node_modules/serve-static/node_modules/debug": { + "version": "2.6.9", + "resolved": "https://registry.npmjs.org/debug/-/debug-2.6.9.tgz", + "integrity": "sha512-bC7ElrdJaJnPbAP+1EotYvqZsb3ecl5wi6Bfi6BJTUcNowp6cvspg0jXznRTKDjm/E7AdgFBVeAPVMNcKGsHMA==", + "license": "MIT", + "dependencies": { + "ms": "2.0.0" + } + }, + "node_modules/serve-static/node_modules/debug/node_modules/ms": { + "version": "2.0.0", + "resolved": "https://registry.npmjs.org/ms/-/ms-2.0.0.tgz", + "integrity": "sha512-Tpp60P6IUJDTuOq/5Z8cdskzJujfwqfOTkrwIwj7IRISpnkJnT6SyJ4PCPnGMoFjC9ddhal5KVIYtAt97ix05A==", + "license": "MIT" + }, + "node_modules/serve-static/node_modules/encodeurl": { + "version": "2.0.0", + "resolved": "https://registry.npmjs.org/encodeurl/-/encodeurl-2.0.0.tgz", + "integrity": "sha512-Q0n9HRi4m6JuGIV1eFlmvJB7ZEVxu93IrMyiMsGC0lrMJMWzRgx6WGquyfQgZVb31vhGgXnfmPNNXmxnOkRBrg==", + "license": "MIT", + "engines": { + "node": ">= 0.8" + } + }, + "node_modules/serve-static/node_modules/mime": { + "version": "1.6.0", + "resolved": "https://registry.npmjs.org/mime/-/mime-1.6.0.tgz", + "integrity": "sha512-x0Vn8spI+wuJ1O6S7gnbaQg8Pxh4NNHb7KSINmEWKiPE4RKOplvijn+NkmYmmRgP68mc70j2EbeTFRsrswaQeg==", + "license": "MIT", + "bin": { + "mime": "cli.js" + }, + "engines": { + "node": ">=4" + } + }, + "node_modules/serve-static/node_modules/send": { + "version": "0.19.0", + "resolved": "https://registry.npmjs.org/send/-/send-0.19.0.tgz", + "integrity": "sha512-dW41u5VfLXu8SJh5bwRmyYUbAoSB3c9uQh6L8h/KtsFREPWpbX1lrljJo186Jc4nmci/sGUZ9a0a0J2zgfq2hw==", + "license": "MIT", + "dependencies": { + "debug": "2.6.9", + "depd": "2.0.0", + "destroy": "1.2.0", + "encodeurl": "~1.0.2", + "escape-html": "~1.0.3", + "etag": "~1.8.1", + "fresh": "0.5.2", + "http-errors": "2.0.0", + "mime": "1.6.0", + "ms": "2.1.3", + "on-finished": "2.4.1", + "range-parser": "~1.2.1", + "statuses": "2.0.1" }, "engines": { "node": ">= 0.8.0" } }, + "node_modules/serve-static/node_modules/send/node_modules/encodeurl": { + "version": "1.0.2", + "resolved": "https://registry.npmjs.org/encodeurl/-/encodeurl-1.0.2.tgz", + "integrity": "sha512-TPJXq8JqFaVYm2CWmPvnP2Iyo4ZSM7/QKcSmuMLDObfpH5fi7RUGmd/rTDf+rut/saiDiQEeVTNgAmJEdAOx0w==", + "license": "MIT", + "engines": { + "node": ">= 0.8" + } + }, "node_modules/server": { "resolved": "server", "link": true @@ -30810,32 +31225,32 @@ "version": "0.0.0", "dependencies": { "@opentelemetry/api": "1.9.0", - "@opentelemetry/exporter-jaeger": "1.25.1", - "@opentelemetry/exporter-trace-otlp-grpc": "0.52.1", - "@opentelemetry/instrumentation": "0.52.1", - "@opentelemetry/instrumentation-express": "0.41.1", - "@opentelemetry/instrumentation-http": "0.52.1", - "@opentelemetry/instrumentation-pino": "0.41.0", - "@opentelemetry/resources": "1.25.1", - "@opentelemetry/sdk-trace-base": "1.25.1", - "@opentelemetry/sdk-trace-node": "1.25.1", - "@opentelemetry/semantic-conventions": "1.25.1", - "axios": "1.7.4", + "@opentelemetry/exporter-jaeger": "1.26.0", + "@opentelemetry/exporter-trace-otlp-grpc": "0.53.0", + "@opentelemetry/instrumentation": "0.53.0", + "@opentelemetry/instrumentation-express": "0.43.0", + "@opentelemetry/instrumentation-http": "0.53.0", + "@opentelemetry/instrumentation-pino": "0.42.0", + "@opentelemetry/resources": "1.26.0", + "@opentelemetry/sdk-trace-base": "1.26.0", + "@opentelemetry/sdk-trace-node": "1.26.0", + "@opentelemetry/semantic-conventions": "1.27.0", + "axios": "1.7.7", "connect-history-api-fallback": "2.0.0", "cors": "2.8.5", - "debug": "4.3.6", - "express": "4.20.0", + "debug": "4.3.7", + "express": "4.21.1", "express-bearer-token": "2.4.0", "express-jwt": "8.4.1", "express-prom-bundle": "8.0.0", "helmet": "8.0.0", - "http-proxy-middleware": "2.0.6", + "http-proxy-middleware": "2.0.7", "js-yaml": "4.1.0", "jwks-rsa": "2.1.5", "node-http-proxy-json": "0.1.9", "path": "0.12.7", - "pino": "9.3.2", - "pino-http": "10.2.0", + "pino": "9.5.0", + "pino-http": "10.3.0", "prom-client": "15.1.3", "retry-axios": "3.1.3" } diff --git a/src/list/server/package.json b/src/list/server/package.json index 7e66f0b0..42172a49 100644 --- a/src/list/server/package.json +++ b/src/list/server/package.json @@ -10,32 +10,32 @@ "type": "module", "dependencies": { "@opentelemetry/api": "1.9.0", - "@opentelemetry/exporter-jaeger": "1.25.1", - "@opentelemetry/exporter-trace-otlp-grpc": "0.52.1", - "@opentelemetry/instrumentation": "0.52.1", - "@opentelemetry/instrumentation-express": "0.41.1", - "@opentelemetry/instrumentation-http": "0.52.1", - "@opentelemetry/instrumentation-pino": "0.41.0", - "@opentelemetry/resources": "1.25.1", - "@opentelemetry/sdk-trace-base": "1.25.1", - "@opentelemetry/sdk-trace-node": "1.25.1", - "@opentelemetry/semantic-conventions": "1.25.1", - "axios": "1.7.4", + "@opentelemetry/exporter-jaeger": "1.26.0", + "@opentelemetry/exporter-trace-otlp-grpc": "0.53.0", + "@opentelemetry/instrumentation": "0.53.0", + "@opentelemetry/instrumentation-express": "0.43.0", + "@opentelemetry/instrumentation-http": "0.53.0", + "@opentelemetry/instrumentation-pino": "0.42.0", + "@opentelemetry/resources": "1.26.0", + "@opentelemetry/sdk-trace-base": "1.26.0", + "@opentelemetry/sdk-trace-node": "1.26.0", + "@opentelemetry/semantic-conventions": "1.27.0", + "axios": "1.7.7", "connect-history-api-fallback": "2.0.0", "cors": "2.8.5", - "debug": "4.3.6", - "express": "4.20.0", + "debug": "4.3.7", + "express": "4.21.1", "express-bearer-token": "2.4.0", "express-jwt": "8.4.1", "express-prom-bundle": "8.0.0", "helmet": "8.0.0", - "http-proxy-middleware": "2.0.6", + "http-proxy-middleware": "2.0.7", "js-yaml": "4.1.0", "jwks-rsa": "2.1.5", "node-http-proxy-json": "0.1.9", "path": "0.12.7", - "pino": "9.3.2", - "pino-http": "10.2.0", + "pino": "9.5.0", + "pino-http": "10.3.0", "prom-client": "15.1.3", "retry-axios": "3.1.3" } diff --git a/src/notify/build.gradle b/src/notify/build.gradle index e26780c5..385f6ffb 100644 --- a/src/notify/build.gradle +++ b/src/notify/build.gradle @@ -13,7 +13,7 @@ dependencies { implementation 'org.springframework.boot:spring-boot-starter-thymeleaf' implementation 'org.springframework.boot:spring-boot-starter-quartz' - implementation 'org.springframework.retry:spring-retry:2.0.7' + implementation 'org.springframework.retry:spring-retry:2.0.10' // https://mvnrepository.com/artifact/jakarta.mail/jakarta.mail-api implementation 'jakarta.mail:jakarta.mail-api:2.1.3' diff --git a/src/notify/tests/e2e/docker-compose.yaml b/src/notify/tests/e2e/docker-compose.yaml index f72f87fa..922c44f8 100644 --- a/src/notify/tests/e2e/docker-compose.yaml +++ b/src/notify/tests/e2e/docker-compose.yaml @@ -31,7 +31,7 @@ services: POSTGRES_DB: recruit_notify_jobs tester: - image: docker.io/curlimages/curl:8.9.1@sha256:8addc281f0ea517409209f76832b6ddc2cabc3264feb1ebbec2a2521ffad24e4 + image: docker.io/curlimages/curl:8.10.1@sha256:d9b4541e214bcd85196d6e92e2753ac6d0ea699f0af5741f8c6cccbfcf00ef4b command: > -X GET --fail @@ -45,7 +45,7 @@ services: - notify fhir: - image: docker.io/hapiproject/hapi:v7.2.0@sha256:9bcafa8342b572eee248cb7c48c496863d352bbd0347e1d98ea238d09620e89b + image: docker.io/hapiproject/hapi:v7.4.0@sha256:f34b41f5002665f384cf344da2d8e653025bd095aa37aa6f5a9d6dc0dac75684 environment: HAPI_FHIR_VALIDATION_REQUESTS_ENABLED: "true" HAPI_FHIR_SUBSCRIPTION_RESTHOOK_ENABLED: "true" diff --git a/src/query/build.gradle b/src/query/build.gradle index 257b4446..12126f61 100644 --- a/src/query/build.gradle +++ b/src/query/build.gradle @@ -12,19 +12,19 @@ plugins { dependencies { implementation 'org.springframework.boot:spring-boot-starter-webflux' - implementation 'org.apache.camel:camel-sql:4.7.0' - implementation 'org.apache.camel:camel-jackson:4.7.0' - implementation 'org.apache.camel:camel-jsonpath:4.7.0' - implementation 'org.apache.camel:camel-fhir:4.7.0' - implementation 'org.apache.camel:camel-http:4.7.0' - implementation 'org.apache.camel:camel-cron:4.7.0' - - implementation 'org.apache.camel.springboot:camel-rest-starter:4.7.0' - implementation 'org.apache.camel.springboot:camel-servlet-starter:4.7.0' - implementation 'org.apache.camel.springboot:camel-spring-boot-starter:4.7.0' - implementation 'org.apache.camel.springboot:camel-micrometer-starter:4.7.0' - - implementation 'com.fasterxml.jackson.core:jackson-annotations:2.17.2' + implementation 'org.apache.camel:camel-sql:4.8.0' + implementation 'org.apache.camel:camel-jackson:4.8.0' + implementation 'org.apache.camel:camel-jsonpath:4.8.0' + implementation 'org.apache.camel:camel-fhir:4.8.0' + implementation 'org.apache.camel:camel-http:4.8.0' + implementation 'org.apache.camel:camel-cron:4.8.0' + + implementation 'org.apache.camel.springboot:camel-rest-starter:4.8.0' + implementation 'org.apache.camel.springboot:camel-servlet-starter:4.8.0' + implementation 'org.apache.camel.springboot:camel-spring-boot-starter:4.8.0' + implementation 'org.apache.camel.springboot:camel-micrometer-starter:4.8.0' + + implementation 'com.fasterxml.jackson.core:jackson-annotations:2.18.0' implementation 'net.minidev:json-smart:2.5.1' diff --git a/src/query/tests/e2e/Dockerfile b/src/query/tests/e2e/Dockerfile index 414d2760..36cd2976 100644 --- a/src/query/tests/e2e/Dockerfile +++ b/src/query/tests/e2e/Dockerfile @@ -1,4 +1,4 @@ -FROM docker.io/library/python:3.12.4-alpine@sha256:63094abdaf49e046da9f6529ecd6ce4d853d9bfbf00a25c52bbbb68b3223b490 +FROM docker.io/library/python:3.13.0-alpine@sha256:c38ead8bcf521573dad837d7ecfdebbc87792202e89953ba8b2b83a9c5a520b6 WORKDIR /opt/tests COPY requirements.txt . diff --git a/src/query/tests/e2e/docker-compose.yaml b/src/query/tests/e2e/docker-compose.yaml index 1421a7a3..bf45ac8b 100644 --- a/src/query/tests/e2e/docker-compose.yaml +++ b/src/query/tests/e2e/docker-compose.yaml @@ -33,7 +33,7 @@ services: - query fhir: - image: docker.io/hapiproject/hapi:v7.2.0@sha256:9bcafa8342b572eee248cb7c48c496863d352bbd0347e1d98ea238d09620e89b + image: docker.io/hapiproject/hapi:v7.4.0@sha256:f34b41f5002665f384cf344da2d8e653025bd095aa37aa6f5a9d6dc0dac75684 environment: HAPI_FHIR_VALIDATION_REQUESTS_ENABLED: "true" HAPI_FHIR_SUBSCRIPTION_RESTHOOK_ENABLED: "true" @@ -43,7 +43,7 @@ services: HAPI_FHIR_NARRATIVE_ENABLED: "false" broadsea-atlasdb: - image: docker.io/ohdsi/broadsea-atlasdb:2.1.0@sha256:99b4bd5515b3d82adb5bac9b14558b434df55fced6c194c965e3fb1371cb36c5 + image: docker.io/ohdsi/broadsea-atlasdb:2.2.0@sha256:ec23023c756ed32426c922a2565af26718100e8cef09c927d0a7b9f07b204935 ohdsi-webapi: image: docker.io/ohdsi/webapi:2.14.0@sha256:582b59b186fde5936081c1df6e41cba53e45e112d5b4875ddfda1e4dee4b2981 diff --git a/src/query/tests/e2e/requirements.in b/src/query/tests/e2e/requirements.in index fc8ee8b7..f729f2c0 100644 --- a/src/query/tests/e2e/requirements.in +++ b/src/query/tests/e2e/requirements.in @@ -1,3 +1,3 @@ -fhirclient==4.2.0 -pytest==8.3.2 +fhirclient==4.2.1 +pytest==8.3.3 retrying==1.3.4 diff --git a/src/query/tests/e2e/requirements.txt b/src/query/tests/e2e/requirements.txt index e973e4d2..17256593 100644 --- a/src/query/tests/e2e/requirements.txt +++ b/src/query/tests/e2e/requirements.txt @@ -115,7 +115,7 @@ charset-normalizer==3.4.0 \ --hash=sha256:fe9f97feb71aa9896b81973a7bbada8c49501dc73e58a10fcef6663af95e5079 \ --hash=sha256:ffc519621dce0c767e96b9c53f09c5d215578e10b02c285809f76509a3931482 # via requests -fhirclient==4.2.0 \ +fhirclient==4.2.1 \ --hash=sha256:1f09a512fbe38965eaaa5634eb792435a9a3f4b7be877057e7ff888d0798eb98 \ --hash=sha256:377df919ab754685b5179689d9c0ca519676841cd6a1d4fd29692a2ca6b27a1c # via -r requirements.in @@ -135,7 +135,7 @@ pluggy==1.5.0 \ --hash=sha256:2cffa88e94fdc978c4c574f15f9e59b7f4201d439195c3715ca9e2486f1d0cf1 \ --hash=sha256:44e1ad92c8ca002de6377e165f3e0f1be63266ab4d554740532335b9d75ea669 # via pytest -pytest==8.3.2 \ +pytest==8.3.3 \ --hash=sha256:4ba08f9ae7dcf84ded419494d229b48d0903ea6407b030eaec46df5e6a73bba5 \ --hash=sha256:c132345d12ce551242c87269de812483f5bcc87cdbb4722e48487ba194f9fdce # via -r requirements.in diff --git a/tests/chaos/tester/Dockerfile b/tests/chaos/tester/Dockerfile index 74e78276..1f41a4ff 100644 --- a/tests/chaos/tester/Dockerfile +++ b/tests/chaos/tester/Dockerfile @@ -26,7 +26,7 @@ USER 65532:65532 ENV DOTNET_ENVIRONMENT="Production" \ DOTNET_CLI_TELEMETRY_OPTOUT=1 -COPY --from=docker.io/bitnami/kubectl:1.30.3@sha256:fc6e48522aa4417275d6fa92bd820f426bbf27454c80b327c449ef6e32467bd3 /opt/bitnami/kubectl/bin/kubectl /usr/bin/kubectl +COPY --from=docker.io/bitnami/kubectl:1.31.1@sha256:b509ab6000477ebe788df3509a8c4177e91238ee3003f33edea0931be3794340 /opt/bitnami/kubectl/bin/kubectl /usr/bin/kubectl COPY ./sample-list-bundle.json /tmp/ COPY ./chaos.yaml /tmp/ diff --git a/tests/chaos/tester/tester.csproj b/tests/chaos/tester/tester.csproj index 88dd0184..4bbff391 100644 --- a/tests/chaos/tester/tester.csproj +++ b/tests/chaos/tester/tester.csproj @@ -8,8 +8,8 @@ - - + +