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miRacumDQA NEWS

Unreleased (2022-08-30)

CI

  • added deps for devtools (dfda09d)

Other changes

Full set of changes: v3.1.0...dfda09d

v3.1.0 (2022-07-04)

New features

  • updated i2b2 sqls; closes #33 (1de1b42)
  • remove schema from sql statements (489cc68)
  • more atemporal plausibilities (0a87632)

Bug fixes

  • update mdr i2b2 start date (1ff737c)
  • moving i2b2 to sql-modify; addresses #33 (b336261)
  • fixed issue with i2b2 plausi regex (63d8f75)

Refactorings

  • updated sqls of i2b2 to exclude null values and to be conform with fhir (aae3f69)

CI

Other changes

  • preparing release v3.1.0 (b922b59)
  • updated news.md (461c6d8)
  • updated news.md (b370a03)
  • updated news.md (a0ddbf6)
  • replaced “data system” with “database” (9e4f31d)
  • changed “Completeness” to “Completeness Checks” in the GUI (12208e1)
  • updated description (1b9f024)
  • updated news.md (d349765)
  • updated dev version (7253284)

Full set of changes: v3.0.0...v3.1.0

v3.0.0 (2022-05-20)

New features

  • added preparation for logo (d9697f2)
  • added laboratory values; enhanced sqls for i2b2 and fhir (2212c92)
  • working on fhir sqls (90d2073)
  • adding more dataelements (wip) (6a0f179)
  • added cache of 1 day for mdr (b53cd7f)
  • added more data elements (f99399b)
  • added further dataelements (e98743f)
  • working on re-adding omop; added to mdr (e6e738a)
  • working on adaption of dehub mdr (a5d2550)
  • working on mdr downloading (9246d51)
  • connecting dehub mdr via reticulate with r (13844a2)
  • working on dehup adaption (4b5ce04)
  • working on mdr upload (8734d4f)
  • working on dehub adaptions; wip (5fe6885)

Bug fixes

  • updated constraints for kontaktklasse (1451fd0)
  • added data elements to be tested to dqamdr_config.py (066f783)
  • fixed error in fachabteilung-fhir sql (26b6c87)
  • fixed utf8 typo (b301c25)
  • fallback to local mdr file if api does not return sufficient rows (98a632a)
  • fixed datatype of fachabteilung (eb0dd6e)
  • re-added data.table import for datamap sending (feae6a3)
  • fixed loading mdr from new dehub-dev (83daf16)
  • working on issue with escaped slashes (wip) (96830b8)
  • updated logic to append old slots when updating; furthermore now only consider wanted datalements (261ee6e)
  • updated sql statements to new fhir paths (1e06191)
  • fixed downloading of clean mdr and preparation with dqa specific information (2b06105)
  • corrected reference to DQAgui (0652bdd)
  • typo in dependency DQAgui (614940a)
  • removed custom reset due to shiny errors (6f64bd4)
  • updated omop sqls (1a781f7)
  • distinct gender with patid (367a2aa)
  • updated dt.hospitalization (3c18ce6)
  • updated dt.hospitalization sql in fhir-gw (71fa4d9)
  • sending data to datamap in headless mode caused crashes (df1d537)
  • don’t display a gui warning if headles==true (40ff47c)

Refactorings

  • revised sql statements for fhir and i2b2 (62fc60b)
  • enhanced labor-statement (3b20460)
  • reworked fhir sqls (60166c5)
  • switching from dizutils to diztools (88cefad)

Tests

Docs

Other changes

  • updated version to 3.0.0 (6522aa0)
  • updated news.md (d422726)
  • updated news.md (e9981e3)
  • added tic.R to rbuildignore (5058928)
  • always applying dqastats::read_mdr on imported mdr to apply all implemented rules (24dd4e1)
  • added logo to app title (8aa8c13)
  • removed badges from readme (ba46f7d)
  • updated news.md and rbuildignore (24fd55f)
  • updated news.md (68346a0)
  • updated devstuffs to get auto-changelog working again (015637d)
  • updated news.md (6f98857)
  • updated misspelled urls from readme and description (5610204)
  • removed unneeded dependencies; fixed subtitle in markdown (965957c)
  • updated news.md (c151626)
  • added error messages and feedback details (3973ae7)
  • removed mdr_legacy.csv (7ff3883)
  • updated news.md (f8390e4)
  • added diztools version (29ba00b)
  • updated news.md (5cbd294)
  • updated formatting of i2b2 sql (10be45a)
  • merged feat_new_coreds_python into development (4392d38)
  • updated debugging-script (cdec8e0)
  • comments to upload script (9217f25)
  • updated news.md (7864a4f)
  • updated data range in license statement (cda9d94)
  • revised adding of remotes in devstuffs (d4fdab4)
  • updated news.md (a5828c1)
  • updated news.md (a78768c)
  • implementing new value_set (downstream to dqagui/dqastats) (f5070b5)
  • creating news.md; allow in gitignore; addctoryed to rbuildignore (bbba955)

Full set of changes: v2.1.2...v3.0.0

v2.1.2 (2021-07-02)

New features

  • added date format to fhirgw in the mdr (a3e4737)
  • added db_scheme to mdr-column for table_name (6c37cd6)
  • modified mdr to restricting_date_var (20e7baf)

Bug fixes

  • updated fhir sqls (049384d)
  • romveing empty rows from influx export (22b75d8)
  • made influxdb export work agaon (b78219f)
  • changed default date format from plain to json (70ec411)
  • changed dqagui dep to dev (672eba2)
  • changed date format for i2b2 date-cols (24a82b3)

Refactorings

  • speed improvements in sql (2525bf9)
  • added markdown to suggests due to error in knitr (e77b233)

CI

  • updated ci token name (aa12f2a)
  • moved to central ci-config (9bbf4de)

Style

  • added newpages before new sections (642b25c)
  • added R version to gui (9a00427)

Other changes

  • first commit after release (eebbbed)
  • linting stuff (243f9c8)
  • excluded ci folder from r build (4379e1d)
  • preparation for new release (a46e3a3)
  • switched back to slower sql due to jdbc version incompatibility (2be3955)
  • updated mdr import for samply (cd2f364)
  • updated mdr (6a9e32a)
  • removed p21csv and restricting data for p21staging (cb16f56)
  • moving towards date-restriction (7121ea2)
  • added analysis period to output markdown (4ccf9e7)
  • updated license date (092c21c)

Full set of changes: v2.1.1...v2.1.2

v2.1.1 (2021-02-19)

Refactorings

  • preparation for new release (9a8a656)

CI

  • added docker:git as image for release-build (06249d6)
  • updated ci to also run for new tags (ae7cb93)
  • updated ci (dd737ed)
  • updated ci for new harbor and base_image (2813fa8)
  • siwtched to dqa_base_image (c0b4794)
  • simplified ci, removed dqastats-tag, dqagui-tag, dizutils-tag (424adc9)

Full set of changes: v2.1.0...v2.1.1

v2.1.0 (2020-05-07)

Full set of changes: v2.0.8...v2.1.0

v2.0.8 (2020-04-28)

Full set of changes: v2.0.7...v2.0.8

v2.0.7 (2020-04-21)

Full set of changes: v2.0.6...v2.0.7

v2.0.6 (2020-03-20)

Full set of changes: v2.0.5...v2.0.6

v2.0.5 (2020-03-16)

Full set of changes: v2.0.4...v2.0.5

v2.0.4 (2020-02-25)

Full set of changes: v2.0.3...v2.0.4

v2.0.3 (2020-01-30)

Full set of changes: v2.0.2...v2.0.3

v2.0.2 (2019-11-15)

Full set of changes: v2.0.1...v2.0.2

v2.0.1 (2019-11-12)

Full set of changes: v2.0.0...v2.0.1

v2.0.0 (2019-09-27)

Full set of changes: v1.3.2.9010...v2.0.0

v1.3.2.9010 (2019-08-30)

Full set of changes: v1.3.2.9000...v1.3.2.9010

v1.3.2.9000 (2019-08-20)

Full set of changes: v1.3.1.9006...v1.3.2.9000

v1.3.1.9006 (2019-08-14)

Full set of changes: v1.3.1.9005...v1.3.1.9006

v1.3.1.9005 (2019-08-08)

Full set of changes: v1.3.1.9003...v1.3.1.9005

v1.3.1.9003 (2019-07-19)

Full set of changes: v1.3.1.9001...v1.3.1.9003

v1.3.1.9001 (2019-07-19)

Full set of changes: v1.3.1.9000...v1.3.1.9001

v1.3.1.9000 (2019-07-19)

Full set of changes: 371821e...v1.3.1.9000