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MiXCR v2.0.3

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@dbolotin dbolotin released this 26 Dec 15:07
· 3469 commits to develop since this release
Major changes
  • User-friendly export of mutations in germline sequences: nucleotide, amino-acid and detailed (provides means to link nucleotide mutations with resulting amino-acid mutations; e.g. it allows to easy differentiate between sense and nonsense nucleotide mutations). Mutations can be exported for any gene feature (e.g. FR3) realtive to any gene feature (e.g. VRegion).
  • Fix for NPE in assemble action invoked with -OmaxBadPointsPercent=0
  • Support for Linux free version 3.3.10 in mixcr wrapper script (now MiXCR runs on Centos 7.2, Ubuntu 16.04.1)
  • Unified way for gene feature translation (frame is inferred using closest reference point known to be in-frame)
Minor changes
  • fix for wrong filtering of stop codons in case of featuresToAlign with non-coding regions
  • Backward compatibility option --diff-loci in align action