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MiXCR v1.3
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@dbolotin dbolotin released this 13 Aug 08:19
· 3984 commits to develop since this release
v1.3
8b41bd2
  • new feature: alignments with V and J genes from different loci are dropped (this behaviour can be turned off by adding '--diff-loci' command line option)
  • default parameter value changed: for cloneClusteringParameters.specificMutationProbability value changed from 1E-4 to 1E-3
  • default parameter value changed: for cloneClusteringParameters.searchParameters value changed from oneMismatch to twoMismatchesOrIndels
  • bug-fix: overlapping of reads now preserves read description
  • bug-fix: -descrR2 now outputs information from R2 (was from R1)
  • minor bug-fixed: NPE in VDJCAlignerAbstract

⚠️ default assembler parameters changed: mixcr assemble ... now performs stronger error correction. To avoid any possible biases while comparing data sets, make sure that they are all analysed using the same MiXCR version.

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