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Releases: mikolmogorov/Flye

Flye 2.3.4

20 May 01:46
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  • A fix for assemblies with low reads count
  • Polishing of large genomes is now 2-3x faster and requires less memory

Flye 2.3.3

28 Mar 04:28
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  • Automatic selection of minimum overlap parameter based on read length
  • Fixed bug causing deletion of edges with very high coverage
  • Minimap2 updated
  • Other bugfixes

Flye 2.3.2

20 Feb 21:30
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  • Better contiguity for larger genome assemblies
  • Improvements in corrected reads mode
  • Various bugfixes

Flye 2.3.1

13 Jan 21:28
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  • Minor release with a few bugs fixed

Flye 2.3

04 Jan 08:42
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  • ABruijn 2.x branch has been renamed to Flye, highlighting many substantial algorithmic changes
  • Stable version of the repeat analysis module
  • New command-line syntax (fallback mode with the old syntax is available)
  • New --subassemblies mode for generating consensus of multiple assemblies
  • Improved preformance and reduced memory footprint (now scales to human genome)
  • Corrected reads are now supported
  • Extra output with information about the contigs (coverage, multiplicity, graph paths etc.)
  • Gzipped Fasta/q support
  • Multiple read files support
  • Various bugfixes

ABruijn 2.2 beta

08 Oct 01:36
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ABruijn 2.2 beta Pre-release
Pre-release
  • Various bug fixes and improvements
  • More accurate assembly graph construction
  • Support for very long (100kb+) reads
  • Fastq input

ABruijn 2.1 beta

11 Sep 18:59
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ABruijn 2.1 beta Pre-release
Pre-release
  • Various bug fixes and performance improvements

ABruijn 2.0 beta

09 Aug 22:24
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ABruijn 2.0 beta Pre-release
Pre-release
  • A new repeat graph analysis module for more complete and accurate assembly
  • ABruijn now outputs a graph representation of the final assembly
  • Significant improvements in performance and reduced memory footprint
  • Various bugfixes

ABruijn v1.0

09 Nov 23:22
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First stable release.