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calcR2.sh
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calcR2.sh
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plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AAC.chr22.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AAC.chr22
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AAC.chr21.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AAC.chr21
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AAC.chr20.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AAC.chr20
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AAC.chr19.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AAC.chr19
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AAC.chr18.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AAC.chr18
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AAC.chr17.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AAC.chr17
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AAC.chr16.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AAC.chr16
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AAC.chr15.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AAC.chr15
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AAC.chr14.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AAC.chr14
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AAC.chr13.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AAC.chr13
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AAC.chr12.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AAC.chr12
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AAC.chr11.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AAC.chr11
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AAC.chr10.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AAC.chr10
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AAC.chr9.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AAC.chr9
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AAC.chr8.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AAC.chr8
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AAC.chr7.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AAC.chr7
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AAC.chr6.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AAC.chr6
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AAC.chr5.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AAC.chr5
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AAC.chr4.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AAC.chr4
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AAC.chr3.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AAC.chr3
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AAC.chr2.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AAC.chr2
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AAC.chr1.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AAC.chr1
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AFR.chr22.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AFR.chr22
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AFR.chr21.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AFR.chr21
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AFR.chr20.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AFR.chr20
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AFR.chr19.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AFR.chr19
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AFR.chr18.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AFR.chr18
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AFR.chr17.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AFR.chr17
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AFR.chr16.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AFR.chr16
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AFR.chr15.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AFR.chr15
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AFR.chr14.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AFR.chr14
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AFR.chr13.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AFR.chr13
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AFR.chr12.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AFR.chr12
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AFR.chr11.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AFR.chr11
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AFR.chr10.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AFR.chr10
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AFR.chr9.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AFR.chr9
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AFR.chr8.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AFR.chr8
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AFR.chr7.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AFR.chr7
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AFR.chr6.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AFR.chr6
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AFR.chr5.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AFR.chr5
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AFR.chr4.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AFR.chr4
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AFR.chr3.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AFR.chr3
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AFR.chr2.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AFR.chr2
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AFR.chr1.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AFR.chr1
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile SAS.chr22.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/SAS.chr22
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile SAS.chr21.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/SAS.chr21
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile SAS.chr20.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/SAS.chr20
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile SAS.chr19.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/SAS.chr19
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile SAS.chr18.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/SAS.chr18
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile SAS.chr17.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/SAS.chr17
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile SAS.chr16.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/SAS.chr16
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile SAS.chr15.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/SAS.chr15
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile SAS.chr14.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/SAS.chr14
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile SAS.chr13.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/SAS.chr13
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile SAS.chr12.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/SAS.chr12
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile SAS.chr11.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/SAS.chr11
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile SAS.chr10.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/SAS.chr10
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile SAS.chr9.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/SAS.chr9
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile SAS.chr8.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/SAS.chr8
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile SAS.chr7.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/SAS.chr7
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile SAS.chr6.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/SAS.chr6
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile SAS.chr5.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/SAS.chr5
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile SAS.chr4.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/SAS.chr4
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile SAS.chr3.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/SAS.chr3
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile SAS.chr2.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/SAS.chr2
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile SAS.chr1.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/SAS.chr1
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EUR.chr22.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EUR.chr22
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EUR.chr21.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EUR.chr21
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EUR.chr20.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EUR.chr20
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EUR.chr19.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EUR.chr19
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EUR.chr18.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EUR.chr18
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EUR.chr17.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EUR.chr17
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EUR.chr16.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EUR.chr16
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EUR.chr15.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EUR.chr15
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EUR.chr14.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EUR.chr14
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EUR.chr13.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EUR.chr13
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EUR.chr12.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EUR.chr12
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EUR.chr11.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EUR.chr11
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EUR.chr10.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EUR.chr10
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EUR.chr9.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EUR.chr9
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EUR.chr8.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EUR.chr8
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EUR.chr7.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EUR.chr7
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EUR.chr6.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EUR.chr6
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EUR.chr5.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EUR.chr5
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EUR.chr4.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EUR.chr4
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EUR.chr3.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EUR.chr3
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EUR.chr2.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EUR.chr2
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EUR.chr1.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EUR.chr1
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EAS.chr22.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EAS.chr22
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EAS.chr21.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EAS.chr21
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EAS.chr20.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EAS.chr20
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EAS.chr19.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EAS.chr19
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EAS.chr18.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EAS.chr18
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EAS.chr17.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EAS.chr17
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EAS.chr16.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EAS.chr16
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EAS.chr15.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EAS.chr15
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EAS.chr14.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EAS.chr14
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EAS.chr13.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EAS.chr13
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EAS.chr12.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EAS.chr12
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EAS.chr11.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EAS.chr11
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EAS.chr10.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EAS.chr10
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EAS.chr9.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EAS.chr9
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EAS.chr8.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EAS.chr8
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EAS.chr7.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EAS.chr7
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EAS.chr6.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EAS.chr6
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EAS.chr5.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EAS.chr5
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EAS.chr4.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EAS.chr4
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EAS.chr3.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EAS.chr3
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EAS.chr2.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EAS.chr2
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile EAS.chr1.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/EAS.chr1
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AMR.chr22.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AMR.chr22
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AMR.chr21.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AMR.chr21
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AMR.chr20.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AMR.chr20
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AMR.chr19.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AMR.chr19
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AMR.chr18.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AMR.chr18
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AMR.chr17.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AMR.chr17
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AMR.chr16.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AMR.chr16
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AMR.chr15.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AMR.chr15
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AMR.chr14.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AMR.chr14
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AMR.chr13.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AMR.chr13
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AMR.chr12.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AMR.chr12
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AMR.chr11.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AMR.chr11
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AMR.chr10.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AMR.chr10
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AMR.chr9.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AMR.chr9
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AMR.chr8.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AMR.chr8
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AMR.chr7.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AMR.chr7
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AMR.chr6.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AMR.chr6
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AMR.chr5.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AMR.chr5
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AMR.chr4.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AMR.chr4
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AMR.chr3.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AMR.chr3
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AMR.chr2.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AMR.chr2
plink --maf 0.01 --r2 with-freqs gz --ld-window-kb 1000 --ld-window-r2 0.2 --bfile AMR.chr1.phase3_v5a.biallelic_snpsOnly_PASS_MAC3 --out ./r2s/AMR.chr1