-
Notifications
You must be signed in to change notification settings - Fork 0
/
NAMESPACE
69 lines (68 loc) · 2.36 KB
/
NAMESPACE
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
# Generated by roxygen2: do not edit by hand
export(DESeqDataSetFromCollection)
export(Maaslin2)
export(MbioDataset)
export(alphaDiv)
export(betaDiv)
export(correlation)
export(correlationNetwork)
export(differentialAbundance)
export(getCollection)
export(getComputeResult)
export(getComputeResultWithMetadata)
export(getVariables)
export(importBIOM)
export(importDADA2)
export(importHUMAnN)
export(importMetaPhlAn)
export(importMothur)
export(importPhyloseq)
export(importQIIME2)
export(importTreeSE)
export(importTreeSummarizedExperiment)
export(rankedAbundance)
export(selfCorrelation)
export(updateCollectionName)
exportMethods(getCollectionNames)
exportMethods(getCollectionVariableNames)
exportMethods(getMetadataVariableNames)
exportMethods(getMetadataVariableSummary)
exportMethods(getSampleMetadata)
import(TreeSummarizedExperiment)
import(data.table)
importFrom(DESeq2,DESeqDataSetFromMatrix)
importFrom(Maaslin2,Maaslin2)
importFrom(SummarizedExperiment,rowData)
importFrom(corGraph,bipartiteNetwork)
importFrom(corGraph,unipartiteNetwork)
importFrom(data.table,data.table)
importFrom(igraph,graph_from_data_frame)
importFrom(microbiomeComputations,AbsoluteAbundanceData)
importFrom(microbiomeComputations,AbundanceData)
importFrom(microbiomeComputations,Comparator)
importFrom(microbiomeComputations,DifferentialAbundanceResult)
importFrom(microbiomeComputations,alphaDiv)
importFrom(microbiomeComputations,betaDiv)
importFrom(microbiomeComputations,internalDiffAbund)
importFrom(microbiomeComputations,rankedAbundance)
importFrom(microbiomeComputations,selfCorrelation)
importFrom(purrr,reduce)
importFrom(veupathUtils,Collection)
importFrom(veupathUtils,Collections)
importFrom(veupathUtils,ComputeResult)
importFrom(veupathUtils,CorrelationResult)
importFrom(veupathUtils,SampleMetadata)
importFrom(veupathUtils,VariableSpec)
importFrom(veupathUtils,correlation)
importFrom(veupathUtils,findAncestorIdColumns)
importFrom(veupathUtils,findRecordIdColumn)
importFrom(veupathUtils,getCollectionNames)
importFrom(veupathUtils,getCollectionVariableNames)
importFrom(veupathUtils,getDataFromSource)
importFrom(veupathUtils,getIdColumns)
importFrom(veupathUtils,getMetadataVariableNames)
importFrom(veupathUtils,getMetadataVariableSummary)
importFrom(veupathUtils,getSampleMetadata)
importFrom(veupathUtils,getSampleMetadataIdColumns)
importFrom(veupathUtils,matchArg)
importFrom(veupathUtils,selfCorrelation)