From 0e83696c8a70a9a56b7baf8b732ead1a9f638dfa Mon Sep 17 00:00:00 2001
From: michbur <michalburdukiewicz@gmail.com>
Date: Wed, 21 Sep 2016 11:49:40 +0200
Subject: [PATCH] CRAN fixes

---
 DESCRIPTION   |  2 +-
 README.md     |  8 ++++----
 inst/CITATION | 17 +++++++++++------
 3 files changed, 16 insertions(+), 11 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index db4bf85..3ceba19 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -3,7 +3,7 @@ Type: Package
 Title: N-Gram Analysis of Biological Sequences
 Version: 1.3
 LazyData: true
-Date: 2015-04-02
+Date: 2016-09-21
 Authors@R: c(
     person("Michal", "Burdukiewicz",
     email = "michalburdukiewicz@gmail.com",
diff --git a/README.md b/README.md
index d0799b9..e4357bd 100644
--- a/README.md
+++ b/README.md
@@ -1,5 +1,5 @@
-[![CRAN_Status_Badge](http://www.r-pkg.org/badges/version/biogram)](http://cran.r-project.org/package=biogram)
-[![Downloads](http://cranlogs.r-pkg.org/badges/biogram)](http://cran.rstudio.com/package=biogram)
+[![CRAN_Status_Badge](http://www.r-pkg.org/badges/version/biogram)](https://cran.r-project.org/package=biogram)
+[![Downloads](http://cranlogs.r-pkg.org/badges/biogram)](https://cran.r-project.org/package=biogram)
 [![Build Status](https://api.travis-ci.org/michbur/biogram.png)](https://travis-ci.org/michbur/biogram)
 [![codecov.io](https://codecov.io/github/michbur/biogram/coverage.svg?branch=master)](https://codecov.io/github/michbur/biogram?branch=master) 
 
@@ -15,7 +15,7 @@ biogram uses Quick Permutation Test (QuiPT) for fast feature filtering.
 Installation
 ------------
 
-biogram is available [on CRAN](http://cran.r-project.org/package=biogram), so installation is as simple as:
+biogram is available [on CRAN](https://cran.r-project.org/package=biogram), so installation is as simple as:
 
 ```
 install.packages("biogram")
@@ -38,4 +38,4 @@ citation("biogram")
 ```
 
 or use:
-Michal Burdukiewicz, Piotr Sobczyk and Chris Lauber (2016). biogram: N-Gram Analysis of Biological Sequences. R package version 1.3. http://CRAN.R-project.org/package=biogram
+Michal Burdukiewicz, Piotr Sobczyk and Chris Lauber (2016). biogram: N-Gram Analysis of Biological Sequences. R package version 1.3. https://cran.r-project.org/package=biogram
diff --git a/inst/CITATION b/inst/CITATION
index eed343a..62091a4 100644
--- a/inst/CITATION
+++ b/inst/CITATION
@@ -3,17 +3,22 @@ citHeader("To cite biogram in publications, please use:")
 if(!exists("meta") || is.null(meta)) meta <- packageDescription("biogram") 
 year <- sub(".*(2[[:digit:]]{3})-.*", "\\1", meta$Date) 
 vers <- paste("R package version", meta$Version)
+title <- paste0(meta[["Package"]], ": ", tolower(meta[["Title"]]))
+url <- paste0("https://cran.r-project.org/package=", meta[["Package"]])
 
 citEntry(entry = "Manual",
   author = "Michal Burdukiewicz and Piotr Sobczyk and Chris Lauber",
-  title = "biogram: analysis of biological sequences using n-grams",
+  title = title,
   year = year, 
   note = vers,
-  url = "http://CRAN.R-project.org/package=biogram",
-  textVersion = paste("Burdukiewicz M, Sobczyk P and Lauber C (", 
+  url = "https://CRAN.R-project.org/package=biogram",
+  textVersion = paste0("Burdukiewicz M, Sobczyk P and Lauber C (", 
            year, 
-           "). biogram: analysis of biological sequences using n-grams. ", 
+           "). ", 
+           title,
+           ". ",
            vers, 
-           ". http://CRAN.R-project.org/package=biogram",
-           ".", sep="")
+           ". ", 
+           url,
+           ".")
 )