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  1. theislab/cellrank theislab/cellrank Public

    CellRank: dynamics from multi-view single-cell data

    Python 352 46

  2. scverse/squidpy scverse/squidpy Public

    Spatial Single Cell Analysis in Python

    Python 443 82

  3. ott-jax/ott ott-jax/ott Public

    Optimal transport tools implemented with the JAX framework, to get differentiable, parallel and jit-able computations.

    Python 529 82

  4. theislab/moscot theislab/moscot Public

    Multi-omic single-cell optimal transport tools

    Python 116 9

  5. msmdev/pyGPCCA msmdev/pyGPCCA Public

    pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state models.

    Python 21 4

  6. saezlab/omnipath saezlab/omnipath Public

    Python client for the OmniPath web service

    Python 41 6