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_pkgdown.yml
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/
_pkgdown.yml
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url: https://metrumresearchgroup.github.io/bbr
title: bbr
template:
params:
bootswatch: flatly
navbar:
type: inverse
right:
- icon: fa-github fa-lg
href: https://github.com/metrumresearchgroup/bbr
reference:
- title: Model management
contents:
- new_model
- read_model
- copy_model_from
- inherit_param_estimates
- tweak_initial_estimates
- update_model_id
- model_diff
- tags_diff
- check_up_to_date
- title: Model submission
contents:
- submit_model
- submit_models
- run_nmtran
- print_bbi_args
- title: Model summary and outputs
contents:
- model_summary
- model_summaries
- param_estimates
- nm_join
- nm_tables
- nm_file
- nm_file_multi_tab
- get_omega
- cov_cor
- check_cor_threshold
- as_summary_list
- param_labels
- apply_indices
- block
- title: Bootstrap and Simulation
contents:
- add_simulation
- has_simulation
- get_simulation
- nm_join_sim
- new_bootstrap_run
- setup_bootstrap_run
- summarize_bootstrap_run
- bootstrap_estimates
- get_boot_models
- cleanup_bootstrap_run
- param_estimates_batch
- param_estimates_compare
- title: Summary log tables
contents:
- run_log
- summary_log
- add_summary
- config_log
- add_config
- model_tree
- title: Model object interactions
contents:
- add_tags
- add_notes
- add_based_on
- add_description
- modify_star
- add_bbi_args
- modify_model_field
- build_path_from_model
- get_based_on
- get_model_ancestry
- get_model_id
- get_model_path
- get_output_dir
- get_yaml_path
- get_data_path
- print_bbi
- initial_estimates
- title: bbi configuration
contents:
- use_bbi
- bbi_init
- bbi_version
- bbi_current_release
- bbi_help
- title: Assorted helpers
contents:
- test_threads
- check_run_times
- delete_models
- get_model_status
- check_nonmem_finished
- wait_for_nonmem
- check_file
- collapse_to_string
- tail_output
- tail_lst
- check_nonmem_table_output
- check_grd
- check_ext
- check_output_dir
- check_status_code
- format_cmd_args
- new_ext
- ctl_ext
- mod_ext
- yaml_ext
- open_model_file
- plot_nonmem_table_df
- plot_grd
- plot_ext
- reconcile_yaml
- check_yaml_in_sync
- suppressSpecificWarning