From e1e46006a8ccbb11f06bbd8ec11322edb8df3b32 Mon Sep 17 00:00:00 2001
From: GitHub Actions <actions@github.com>
Date: Mon, 9 Dec 2024 04:50:47 +0000
Subject: [PATCH] site deploy

Auto-generated via `{sandpaper}`
Source  : 7170a22f0ec1cbefbb2d8bbf662f6fecc61adeef
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2024-12-09 04:50:39 +0000
Message : markdown source builds

Auto-generated via `{sandpaper}`
Source  : a0a05629d17d6e7cb89cfded483b65fda7e71222
Branch  : main
Author  : Vini Salazar <17276653+vinisalazar@users.noreply.github.com>
Time    : 2024-12-09 04:49:34 +0000
Message : Replace config values with UoM

  Use these rather than Carpentries values.
---
 404.html                         | 10 +++++-----
 CODE_OF_CONDUCT.html             | 12 ++++++------
 LICENSE.html                     | 12 ++++++------
 aio.html                         | 16 ++++++++--------
 config.yaml                      | 23 +++++++++--------------
 images.html                      | 10 +++++-----
 index.html                       | 16 ++++++++--------
 instructor-notes.html            | 10 +++++-----
 instructor/404.html              | 10 +++++-----
 instructor/CODE_OF_CONDUCT.html  | 12 ++++++------
 instructor/LICENSE.html          | 12 ++++++------
 instructor/aio.html              | 18 +++++++++---------
 instructor/images.html           | 10 +++++-----
 instructor/index.html            | 16 ++++++++--------
 instructor/instructor-notes.html | 10 +++++-----
 instructor/introduction.html     | 18 +++++++++---------
 instructor/key-points.html       | 10 +++++-----
 instructor/profiles.html         | 10 +++++-----
 instructor/reference.html        | 12 ++++++------
 introduction.html                | 16 ++++++++--------
 key-points.html                  | 10 +++++-----
 md5sum.txt                       |  2 +-
 pkgdown.yml                      |  2 +-
 profiles.html                    | 10 +++++-----
 reference.html                   | 12 ++++++------
 renv.lock                        |  2 +-
 sitemap.xml                      | 24 ++++++++++++++++++++++++
 27 files changed, 172 insertions(+), 153 deletions(-)

diff --git a/404.html b/404.html
index fcd86e0..d140da2 100644
--- a/404.html
+++ b/404.html
@@ -287,12 +287,12 @@ <h1>Page not found</h1>
         <p>This lesson is subject to the <a href="CODE_OF_CONDUCT.html">Code of Conduct</a></p>
         <p>
 
-        <a href="https://github.com/carpentries/workbench-template-rmd/edit/main/README.md" class="external-link">Edit on GitHub</a>
+        <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/edit/main/README.md" class="external-link">Edit on GitHub</a>
 
 	
-        | <a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
-        | <a href="https://github.com/carpentries/workbench-template-rmd/" class="external-link">Source</a></p>
-				<p><a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:team@carpentries.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/" class="external-link">Source</a></p>
+				<p><a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:fixme@fixme.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
 			</div>
 			<div class="col-md-6">
 
@@ -315,7 +315,7 @@ <h1>Page not found</h1>
   "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
-  "keywords": "software, data, lesson, The Carpentries",
+  "keywords": "software, data, lesson",
   "name": "Page not found",
   "creativeWorkStatus": "active",
   "url": "melbournebioinformatics.github.io/mb-varnish/404.html",
diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html
index 2552788..cac08f8 100644
--- a/CODE_OF_CONDUCT.html
+++ b/CODE_OF_CONDUCT.html
@@ -272,7 +272,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
         <h1>Contributor Code of Conduct</h1>
         <p>Last updated on 2024-12-09 |
 
-        <a href="https://github.com/carpentries/workbench-template-rmd/edit/main/CODE_OF_CONDUCT.md" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
+        <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/edit/main/CODE_OF_CONDUCT.md" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
 
 
 
@@ -319,12 +319,12 @@ <h1>Contributor Code of Conduct</h1>
         <p>This lesson is subject to the <a href="CODE_OF_CONDUCT.html">Code of Conduct</a></p>
         <p>
 
-        <a href="https://github.com/carpentries/workbench-template-rmd/edit/main/CODE_OF_CONDUCT.md" class="external-link">Edit on GitHub</a>
+        <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/edit/main/CODE_OF_CONDUCT.md" class="external-link">Edit on GitHub</a>
 
 	
-        | <a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
-        | <a href="https://github.com/carpentries/workbench-template-rmd/" class="external-link">Source</a></p>
-				<p><a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:team@carpentries.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/" class="external-link">Source</a></p>
+				<p><a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:fixme@fixme.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
 			</div>
 			<div class="col-md-6">
 
@@ -347,7 +347,7 @@ <h1>Contributor Code of Conduct</h1>
   "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
-  "keywords": "software, data, lesson, The Carpentries",
+  "keywords": "software, data, lesson",
   "name": "Contributor Code of Conduct",
   "creativeWorkStatus": "active",
   "url": "melbournebioinformatics.github.io/mb-varnish/CODE_OF_CONDUCT.html",
diff --git a/LICENSE.html b/LICENSE.html
index e7b82d0..7ba156a 100644
--- a/LICENSE.html
+++ b/LICENSE.html
@@ -272,7 +272,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
         <h1>Licenses</h1>
         <p>Last updated on 2024-12-09 |
 
-        <a href="https://github.com/carpentries/workbench-template-rmd/edit/main/LICENSE.md" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
+        <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/edit/main/LICENSE.md" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
 
 
 
@@ -367,12 +367,12 @@ <h1>Licenses</h1>
         <p>This lesson is subject to the <a href="CODE_OF_CONDUCT.html">Code of Conduct</a></p>
         <p>
 
-        <a href="https://github.com/carpentries/workbench-template-rmd/edit/main/LICENSE.md" class="external-link">Edit on GitHub</a>
+        <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/edit/main/LICENSE.md" class="external-link">Edit on GitHub</a>
 
 	
-        | <a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
-        | <a href="https://github.com/carpentries/workbench-template-rmd/" class="external-link">Source</a></p>
-				<p><a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:team@carpentries.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/" class="external-link">Source</a></p>
+				<p><a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:fixme@fixme.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
 			</div>
 			<div class="col-md-6">
 
@@ -395,7 +395,7 @@ <h1>Licenses</h1>
   "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
-  "keywords": "software, data, lesson, The Carpentries",
+  "keywords": "software, data, lesson",
   "name": "Licenses",
   "creativeWorkStatus": "active",
   "url": "melbournebioinformatics.github.io/mb-varnish/LICENSE.html",
diff --git a/aio.html b/aio.html
index b3e29b8..aa724f4 100644
--- a/aio.html
+++ b/aio.html
@@ -310,7 +310,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
 <hr>
 <p>Last updated on 2024-12-09 |
 
-        <a href="https://github.com/carpentries/workbench-template-rmd/edit/main/episodes/introduction.Rmd" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
+        <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/edit/main/episodes/introduction.Rmd" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
 <div class="text-end">
           <button role="button" aria-pressed="false" tabindex="0" id="expand-code" class="pull-right" data-expand="Expand All Solutions " data-collapse="Collapse All Solutions "> Expand All Solutions <i aria-hidden="true" data-feather="plus"></i></button>
         </div>
@@ -386,7 +386,7 @@ <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Output </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <div class="codewrapper">
 <h3 class="code-label">OUTPUT<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -413,7 +413,7 @@ <h3 class="callout-title">Challenge 2: how do you nest solutions within challeng
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <p>You can add a line with at least three colons and a
 <code>solution</code> tag.</p>
@@ -502,12 +502,12 @@ <h3 class="callout-title">Key Points</h3>
         <p>This lesson is subject to the <a href="CODE_OF_CONDUCT.html">Code of Conduct</a></p>
         <p>
 
-        <a href="https://github.com/carpentries/workbench-template-rmd/edit/main/README.md" class="external-link">Edit on GitHub</a>
+        <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/edit/main/README.md" class="external-link">Edit on GitHub</a>
 
 	
-        | <a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
-        | <a href="https://github.com/carpentries/workbench-template-rmd/" class="external-link">Source</a></p>
-				<p><a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:team@carpentries.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/" class="external-link">Source</a></p>
+				<p><a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:fixme@fixme.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
 			</div>
 			<div class="col-md-6">
 
@@ -531,7 +531,7 @@ <h3 class="callout-title">Key Points</h3>
   "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
-  "keywords": "software, data, lesson, The Carpentries",
+  "keywords": "software, data, lesson",
   "name": "All in One View",
   "creativeWorkStatus": "active",
   "url": "melbournebioinformatics.github.io/mb-varnish/aio.html",
diff --git a/config.yaml b/config.yaml
index ff75dca..7acd993 100644
--- a/config.yaml
+++ b/config.yaml
@@ -2,16 +2,11 @@
 # Values for this lesson.
 #------------------------------------------------------------
 
-# Which carpentry is this (swc, dc, lc, or cp)?
-# swc: Software Carpentry
-# dc: Data Carpentry
-# lc: Library Carpentry
-# cp: Carpentries (to use for instructor training for instance)
-# incubator: The Carpentries Incubator
-# 
-# This option supports custom types so lessons can be branded
-# and themed with your own logo and alt-text (see `carpentry_description`)
-# See https://carpentries.github.io/sandpaper-docs/editing.html#adding-a-custom-logo
+# Which carpentry is this (swc, dc, lc, or cp)? < REPLACED with UNIMELB institutes >
+# uom: University of Melbourne
+# mb: Melbourne Bioinformatics
+# mig: Melbourne Integrative Genomics
+# wehi: Walter and Eliza Hall Institute
 carpentry: 'uom'
 
 # Alt-text description of the lesson.
@@ -21,10 +16,10 @@ carpentry_description: 'Lesson Description'
 title: 'Lesson Title' # FIXME
 
 # Date the lesson was created (YYYY-MM-DD, this is empty by default)
-created: ~ # FIXME: ( ~ means empty, replace with date formatted as above)
+created: ~ # FIXME
 
 # Comma-separated list of keywords for the lesson
-keywords: 'software, data, lesson, The Carpentries' # FIXME
+keywords: 'software, data, lesson' # FIXME
 
 # Life cycle stage of the lesson
 # possible values: pre-alpha, alpha, beta, stable
@@ -34,13 +29,13 @@ life_cycle: 'pre-alpha' # FIXME
 license: 'CC-BY 4.0'
 
 # Link to the source repository for this lesson
-source: 'https://github.com/carpentries/workbench-template-rmd' # FIXME
+source: 'https://github.com/melbournebioinformatics/workbench-template-rmd' # FIXME
 
 # Default branch of your lesson
 branch: 'main'
 
 # Who to contact if there are any issues
-contact: 'team@carpentries.org' # FIXME
+contact: 'fixme@fixme.org' # FIXME
 
 # Navigation ------------------------------------------------
 #
diff --git a/images.html b/images.html
index 5de7228..4f4b1a1 100644
--- a/images.html
+++ b/images.html
@@ -329,12 +329,12 @@ <h3 id="introduction-figure-2">Figure 2</h3>
         <p>This lesson is subject to the <a href="CODE_OF_CONDUCT.html">Code of Conduct</a></p>
         <p>
 
-        <a href="https://github.com/carpentries/workbench-template-rmd/edit/main/README.md" class="external-link">Edit on GitHub</a>
+        <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/edit/main/README.md" class="external-link">Edit on GitHub</a>
 
 	
-        | <a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
-        | <a href="https://github.com/carpentries/workbench-template-rmd/" class="external-link">Source</a></p>
-				<p><a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:team@carpentries.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/" class="external-link">Source</a></p>
+				<p><a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:fixme@fixme.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
 			</div>
 			<div class="col-md-6">
 
@@ -358,7 +358,7 @@ <h3 id="introduction-figure-2">Figure 2</h3>
   "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
-  "keywords": "software, data, lesson, The Carpentries",
+  "keywords": "software, data, lesson",
   "name": "All Images",
   "creativeWorkStatus": "active",
   "url": "melbournebioinformatics.github.io/mb-varnish/images.html",
diff --git a/index.html b/index.html
index 99deaa9..581d381 100644
--- a/index.html
+++ b/index.html
@@ -316,7 +316,7 @@ <h3 class="accordion-header" id="headingSpoiler1">
   Windows
   </h3>
 </button>
-<div id="collapseSpoiler1" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler1" aria-labelledby="headingSpoiler1">
+<div id="collapseSpoiler1" class="accordion-collapse collapse" aria-labelledby="headingSpoiler1" data-bs-parent="#accordionSpoiler1">
 <div class="accordion-body">
 <p>Use PuTTY</p>
 </div>
@@ -331,7 +331,7 @@ <h3 class="accordion-header" id="headingSpoiler2">
   MacOS
   </h3>
 </button>
-<div id="collapseSpoiler2" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler2" aria-labelledby="headingSpoiler2">
+<div id="collapseSpoiler2" class="accordion-collapse collapse" aria-labelledby="headingSpoiler2" data-bs-parent="#accordionSpoiler2">
 <div class="accordion-body">
 <p>Use Terminal.app</p>
 </div>
@@ -346,7 +346,7 @@ <h3 class="accordion-header" id="headingSpoiler3">
   Linux
   </h3>
 </button>
-<div id="collapseSpoiler3" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler3" aria-labelledby="headingSpoiler3">
+<div id="collapseSpoiler3" class="accordion-collapse collapse" aria-labelledby="headingSpoiler3" data-bs-parent="#accordionSpoiler3">
 <div class="accordion-body">
 <p>Use Terminal</p>
 </div>
@@ -372,12 +372,12 @@ <h3 class="accordion-header" id="headingSpoiler3">
         <p>This lesson is subject to the <a href="CODE_OF_CONDUCT.html">Code of Conduct</a></p>
         <p>
 
-        <a href="https://github.com/carpentries/workbench-template-rmd/edit/main/index.md" class="external-link">Edit on GitHub</a>
+        <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/edit/main/index.md" class="external-link">Edit on GitHub</a>
 
 	
-        | <a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
-        | <a href="https://github.com/carpentries/workbench-template-rmd/" class="external-link">Source</a></p>
-				<p><a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:team@carpentries.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/" class="external-link">Source</a></p>
+				<p><a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:fixme@fixme.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
 			</div>
 			<div class="col-md-6">
 
@@ -400,7 +400,7 @@ <h3 class="accordion-header" id="headingSpoiler3">
   "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
-  "keywords": "software, data, lesson, The Carpentries",
+  "keywords": "software, data, lesson",
   "name": "Lesson Title",
   "creativeWorkStatus": "active",
   "url": "melbournebioinformatics.github.io/mb-varnish/index.html",
diff --git a/instructor-notes.html b/instructor-notes.html
index 1da01eb..fe4f1ac 100644
--- a/instructor-notes.html
+++ b/instructor-notes.html
@@ -327,12 +327,12 @@ <h1>Instructor Notes</h1>
         <p>This lesson is subject to the <a href="CODE_OF_CONDUCT.html">Code of Conduct</a></p>
         <p>
 
-        <a href="https://github.com/carpentries/workbench-template-rmd/edit/main/README.md" class="external-link">Edit on GitHub</a>
+        <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/edit/main/README.md" class="external-link">Edit on GitHub</a>
 
 	
-        | <a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
-        | <a href="https://github.com/carpentries/workbench-template-rmd/" class="external-link">Source</a></p>
-				<p><a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:team@carpentries.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/" class="external-link">Source</a></p>
+				<p><a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:fixme@fixme.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
 			</div>
 			<div class="col-md-6">
 
@@ -356,7 +356,7 @@ <h1>Instructor Notes</h1>
   "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
-  "keywords": "software, data, lesson, The Carpentries",
+  "keywords": "software, data, lesson",
   "name": "Instructor Notes",
   "creativeWorkStatus": "active",
   "url": "melbournebioinformatics.github.io/mb-varnish/instructor-notes.html",
diff --git a/instructor/404.html b/instructor/404.html
index 5cc5132..da371c9 100644
--- a/instructor/404.html
+++ b/instructor/404.html
@@ -287,12 +287,12 @@ <h1>Page not found</h1>
         <p>This lesson is subject to the <a href="CODE_OF_CONDUCT.html">Code of Conduct</a></p>
         <p>
 
-        <a href="https://github.com/carpentries/workbench-template-rmd/edit/main/README.md" class="external-link">Edit on GitHub</a>
+        <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/edit/main/README.md" class="external-link">Edit on GitHub</a>
 
 	
-        | <a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
-        | <a href="https://github.com/carpentries/workbench-template-rmd/" class="external-link">Source</a></p>
-				<p><a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:team@carpentries.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/" class="external-link">Source</a></p>
+				<p><a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:fixme@fixme.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
 			</div>
 			<div class="col-md-6">
 
@@ -315,7 +315,7 @@ <h1>Page not found</h1>
   "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
-  "keywords": "software, data, lesson, The Carpentries",
+  "keywords": "software, data, lesson",
   "name": "Page not found",
   "creativeWorkStatus": "active",
   "url": "melbournebioinformatics.github.io/mb-varnish/instructor/404.html",
diff --git a/instructor/CODE_OF_CONDUCT.html b/instructor/CODE_OF_CONDUCT.html
index c32d23e..f9a32c6 100644
--- a/instructor/CODE_OF_CONDUCT.html
+++ b/instructor/CODE_OF_CONDUCT.html
@@ -272,7 +272,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
         <h1>Contributor Code of Conduct</h1>
         <p>Last updated on 2024-12-09 |
 
-        <a href="https://github.com/carpentries/workbench-template-rmd/edit/main/CODE_OF_CONDUCT.md" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
+        <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/edit/main/CODE_OF_CONDUCT.md" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
 
 
 
@@ -321,12 +321,12 @@ <h1>Contributor Code of Conduct</h1>
         <p>This lesson is subject to the <a href="CODE_OF_CONDUCT.html">Code of Conduct</a></p>
         <p>
 
-        <a href="https://github.com/carpentries/workbench-template-rmd/edit/main/CODE_OF_CONDUCT.md" class="external-link">Edit on GitHub</a>
+        <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/edit/main/CODE_OF_CONDUCT.md" class="external-link">Edit on GitHub</a>
 
 	
-        | <a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
-        | <a href="https://github.com/carpentries/workbench-template-rmd/" class="external-link">Source</a></p>
-				<p><a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:team@carpentries.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/" class="external-link">Source</a></p>
+				<p><a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:fixme@fixme.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
 			</div>
 			<div class="col-md-6">
 
@@ -349,7 +349,7 @@ <h1>Contributor Code of Conduct</h1>
   "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
-  "keywords": "software, data, lesson, The Carpentries",
+  "keywords": "software, data, lesson",
   "name": "Contributor Code of Conduct",
   "creativeWorkStatus": "active",
   "url": "melbournebioinformatics.github.io/mb-varnish/instructor/CODE_OF_CONDUCT.html",
diff --git a/instructor/LICENSE.html b/instructor/LICENSE.html
index d86b843..7107a59 100644
--- a/instructor/LICENSE.html
+++ b/instructor/LICENSE.html
@@ -272,7 +272,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
         <h1>Licenses</h1>
         <p>Last updated on 2024-12-09 |
 
-        <a href="https://github.com/carpentries/workbench-template-rmd/edit/main/LICENSE.md" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
+        <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/edit/main/LICENSE.md" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
 
 
 
@@ -369,12 +369,12 @@ <h1>Licenses</h1>
         <p>This lesson is subject to the <a href="CODE_OF_CONDUCT.html">Code of Conduct</a></p>
         <p>
 
-        <a href="https://github.com/carpentries/workbench-template-rmd/edit/main/LICENSE.md" class="external-link">Edit on GitHub</a>
+        <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/edit/main/LICENSE.md" class="external-link">Edit on GitHub</a>
 
 	
-        | <a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
-        | <a href="https://github.com/carpentries/workbench-template-rmd/" class="external-link">Source</a></p>
-				<p><a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:team@carpentries.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/" class="external-link">Source</a></p>
+				<p><a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:fixme@fixme.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
 			</div>
 			<div class="col-md-6">
 
@@ -397,7 +397,7 @@ <h1>Licenses</h1>
   "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
-  "keywords": "software, data, lesson, The Carpentries",
+  "keywords": "software, data, lesson",
   "name": "Licenses",
   "creativeWorkStatus": "active",
   "url": "melbournebioinformatics.github.io/mb-varnish/instructor/LICENSE.html",
diff --git a/instructor/aio.html b/instructor/aio.html
index 0819b0f..72c1dc0 100644
--- a/instructor/aio.html
+++ b/instructor/aio.html
@@ -312,7 +312,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
 <hr>
 <p>Last updated on 2024-12-09 |
 
-        <a href="https://github.com/carpentries/workbench-template-rmd/edit/main/episodes/introduction.Rmd" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
+        <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/edit/main/episodes/introduction.Rmd" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
 <p>Estimated time: <i aria-hidden="true" data-feather="clock"></i> 12 minutes</p>
 <div class="text-end">
           <button role="button" aria-pressed="false" tabindex="0" id="expand-code" class="pull-right" data-expand="Expand All Solutions " data-collapse="Collapse All Solutions "> Expand All Solutions <i aria-hidden="true" data-feather="plus"></i></button>
@@ -372,7 +372,7 @@ <h3 class="card-title">Objectives</h3>
 <button class="accordion-button instructor-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseInstructor1" aria-expanded="false" aria-controls="collapseInstructor1">
   <h3 class="accordion-header" id="headingInstructor1">  <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="edit-2"></i></div> Instructor Note </h3>
 </button>
-<div id="collapseInstructor1" class="accordion-collapse collapse" data-bs-parent="#accordionInstructor1" aria-labelledby="headingInstructor1">
+<div id="collapseInstructor1" class="accordion-collapse collapse" aria-labelledby="headingInstructor1" data-bs-parent="#accordionInstructor1">
 <div class="accordion-body">
 <p>Inline instructor notes can help inform instructors of timing
 challenges associated with the lessons. They appear in the “Instructor
@@ -403,7 +403,7 @@ <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Output </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <div class="codewrapper">
 <h3 class="code-label">OUTPUT<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -430,7 +430,7 @@ <h3 class="callout-title">Challenge 2: how do you nest solutions within challeng
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <p>You can add a line with at least three colons and a
 <code>solution</code> tag.</p>
@@ -519,12 +519,12 @@ <h3 class="callout-title">Key Points</h3>
         <p>This lesson is subject to the <a href="CODE_OF_CONDUCT.html">Code of Conduct</a></p>
         <p>
 
-        <a href="https://github.com/carpentries/workbench-template-rmd/edit/main/README.md" class="external-link">Edit on GitHub</a>
+        <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/edit/main/README.md" class="external-link">Edit on GitHub</a>
 
 	
-        | <a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
-        | <a href="https://github.com/carpentries/workbench-template-rmd/" class="external-link">Source</a></p>
-				<p><a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:team@carpentries.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/" class="external-link">Source</a></p>
+				<p><a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:fixme@fixme.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
 			</div>
 			<div class="col-md-6">
 
@@ -548,7 +548,7 @@ <h3 class="callout-title">Key Points</h3>
   "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
-  "keywords": "software, data, lesson, The Carpentries",
+  "keywords": "software, data, lesson",
   "name": "All in One View",
   "creativeWorkStatus": "active",
   "url": "melbournebioinformatics.github.io/mb-varnish/instructor/aio.html",
diff --git a/instructor/images.html b/instructor/images.html
index a5503f3..af5bda0 100644
--- a/instructor/images.html
+++ b/instructor/images.html
@@ -331,12 +331,12 @@ <h3 id="introduction-figure-2">Figure 2</h3>
         <p>This lesson is subject to the <a href="CODE_OF_CONDUCT.html">Code of Conduct</a></p>
         <p>
 
-        <a href="https://github.com/carpentries/workbench-template-rmd/edit/main/README.md" class="external-link">Edit on GitHub</a>
+        <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/edit/main/README.md" class="external-link">Edit on GitHub</a>
 
 	
-        | <a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
-        | <a href="https://github.com/carpentries/workbench-template-rmd/" class="external-link">Source</a></p>
-				<p><a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:team@carpentries.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/" class="external-link">Source</a></p>
+				<p><a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:fixme@fixme.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
 			</div>
 			<div class="col-md-6">
 
@@ -360,7 +360,7 @@ <h3 id="introduction-figure-2">Figure 2</h3>
   "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
-  "keywords": "software, data, lesson, The Carpentries",
+  "keywords": "software, data, lesson",
   "name": "All Images",
   "creativeWorkStatus": "active",
   "url": "melbournebioinformatics.github.io/mb-varnish/instructor/images.html",
diff --git a/instructor/index.html b/instructor/index.html
index ee66b60..cb16b76 100644
--- a/instructor/index.html
+++ b/instructor/index.html
@@ -332,7 +332,7 @@ <h3 class="accordion-header" id="headingSpoiler1">
   Windows
   </h3>
 </button>
-<div id="collapseSpoiler1" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler1" aria-labelledby="headingSpoiler1">
+<div id="collapseSpoiler1" class="accordion-collapse collapse" aria-labelledby="headingSpoiler1" data-bs-parent="#accordionSpoiler1">
 <div class="accordion-body">
 <p>Use PuTTY</p>
 </div>
@@ -347,7 +347,7 @@ <h3 class="accordion-header" id="headingSpoiler2">
   MacOS
   </h3>
 </button>
-<div id="collapseSpoiler2" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler2" aria-labelledby="headingSpoiler2">
+<div id="collapseSpoiler2" class="accordion-collapse collapse" aria-labelledby="headingSpoiler2" data-bs-parent="#accordionSpoiler2">
 <div class="accordion-body">
 <p>Use Terminal.app</p>
 </div>
@@ -362,7 +362,7 @@ <h3 class="accordion-header" id="headingSpoiler3">
   Linux
   </h3>
 </button>
-<div id="collapseSpoiler3" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler3" aria-labelledby="headingSpoiler3">
+<div id="collapseSpoiler3" class="accordion-collapse collapse" aria-labelledby="headingSpoiler3" data-bs-parent="#accordionSpoiler3">
 <div class="accordion-body">
 <p>Use Terminal</p>
 </div>
@@ -388,12 +388,12 @@ <h3 class="accordion-header" id="headingSpoiler3">
         <p>This lesson is subject to the <a href="CODE_OF_CONDUCT.html">Code of Conduct</a></p>
         <p>
 
-        <a href="https://github.com/carpentries/workbench-template-rmd/edit/main/index.md" class="external-link">Edit on GitHub</a>
+        <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/edit/main/index.md" class="external-link">Edit on GitHub</a>
 
 	
-        | <a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
-        | <a href="https://github.com/carpentries/workbench-template-rmd/" class="external-link">Source</a></p>
-				<p><a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:team@carpentries.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/" class="external-link">Source</a></p>
+				<p><a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:fixme@fixme.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
 			</div>
 			<div class="col-md-6">
 
@@ -416,7 +416,7 @@ <h3 class="accordion-header" id="headingSpoiler3">
   "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
-  "keywords": "software, data, lesson, The Carpentries",
+  "keywords": "software, data, lesson",
   "name": "Lesson Title",
   "creativeWorkStatus": "active",
   "url": "melbournebioinformatics.github.io/mb-varnish/instructor/index.html",
diff --git a/instructor/instructor-notes.html b/instructor/instructor-notes.html
index fd06ba2..4408eab 100644
--- a/instructor/instructor-notes.html
+++ b/instructor/instructor-notes.html
@@ -338,12 +338,12 @@ <h3 id="introduction-headingInstructor1">
         <p>This lesson is subject to the <a href="CODE_OF_CONDUCT.html">Code of Conduct</a></p>
         <p>
 
-        <a href="https://github.com/carpentries/workbench-template-rmd/edit/main/README.md" class="external-link">Edit on GitHub</a>
+        <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/edit/main/README.md" class="external-link">Edit on GitHub</a>
 
 	
-        | <a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
-        | <a href="https://github.com/carpentries/workbench-template-rmd/" class="external-link">Source</a></p>
-				<p><a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:team@carpentries.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/" class="external-link">Source</a></p>
+				<p><a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:fixme@fixme.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
 			</div>
 			<div class="col-md-6">
 
@@ -367,7 +367,7 @@ <h3 id="introduction-headingInstructor1">
   "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
-  "keywords": "software, data, lesson, The Carpentries",
+  "keywords": "software, data, lesson",
   "name": "Instructor Notes",
   "creativeWorkStatus": "active",
   "url": "melbournebioinformatics.github.io/mb-varnish/instructor/instructor-notes.html",
diff --git a/instructor/introduction.html b/instructor/introduction.html
index 77c3a61..c23190a 100644
--- a/instructor/introduction.html
+++ b/instructor/introduction.html
@@ -285,7 +285,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
         <h1>Using RMarkdown</h1>
         <p>Last updated on 2024-12-09 |
 
-        <a href="https://github.com/carpentries/workbench-template-rmd/edit/main/episodes/introduction.Rmd" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
+        <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/edit/main/episodes/introduction.Rmd" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
 
 
 
@@ -344,7 +344,7 @@ <h3 class="card-title">Objectives</h3>
 <button class="accordion-button instructor-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseInstructor1" aria-expanded="false" aria-controls="collapseInstructor1">
   <h3 class="accordion-header" id="headingInstructor1">  <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="edit-2"></i></div> Instructor Note </h3>
 </button>
-<div id="collapseInstructor1" class="accordion-collapse collapse" data-bs-parent="#accordionInstructor1" aria-labelledby="headingInstructor1">
+<div id="collapseInstructor1" class="accordion-collapse collapse" aria-labelledby="headingInstructor1" data-bs-parent="#accordionInstructor1">
 <div class="accordion-body">
 <p>Inline instructor notes can help inform instructors of timing
 challenges associated with the lessons. They appear in the “Instructor
@@ -375,7 +375,7 @@ <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Output </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <div class="codewrapper">
 <h3 class="code-label">OUTPUT<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -402,7 +402,7 @@ <h3 class="callout-title">Challenge 2: how do you nest solutions within challeng
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <p>You can add a line with at least three colons and a
 <code>solution</code> tag.</p>
@@ -496,12 +496,12 @@ <h3 class="callout-title">Key Points</h3>
         <p>This lesson is subject to the <a href="CODE_OF_CONDUCT.html">Code of Conduct</a></p>
         <p>
 
-        <a href="https://github.com/carpentries/workbench-template-rmd/edit/main/episodes/introduction.Rmd" class="external-link">Edit on GitHub</a>
+        <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/edit/main/episodes/introduction.Rmd" class="external-link">Edit on GitHub</a>
 
 	
-        | <a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
-        | <a href="https://github.com/carpentries/workbench-template-rmd/" class="external-link">Source</a></p>
-				<p><a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:team@carpentries.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/" class="external-link">Source</a></p>
+				<p><a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:fixme@fixme.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
 			</div>
 			<div class="col-md-6">
 
@@ -524,7 +524,7 @@ <h3 class="callout-title">Key Points</h3>
   "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
-  "keywords": "software, data, lesson, The Carpentries",
+  "keywords": "software, data, lesson",
   "name": "Using RMarkdown",
   "creativeWorkStatus": "active",
   "url": "melbournebioinformatics.github.io/mb-varnish/instructor/introduction.html",
diff --git a/instructor/key-points.html b/instructor/key-points.html
index e3a38b9..ea50afc 100644
--- a/instructor/key-points.html
+++ b/instructor/key-points.html
@@ -332,12 +332,12 @@ <h2 class="accordion-header" id="flush-headingTwelve">
         <p>This lesson is subject to the <a href="CODE_OF_CONDUCT.html">Code of Conduct</a></p>
         <p>
 
-        <a href="https://github.com/carpentries/workbench-template-rmd/edit/main/README.md" class="external-link">Edit on GitHub</a>
+        <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/edit/main/README.md" class="external-link">Edit on GitHub</a>
 
 	
-        | <a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
-        | <a href="https://github.com/carpentries/workbench-template-rmd/" class="external-link">Source</a></p>
-				<p><a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:team@carpentries.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/" class="external-link">Source</a></p>
+				<p><a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:fixme@fixme.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
 			</div>
 			<div class="col-md-6">
 
@@ -361,7 +361,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
-  "keywords": "software, data, lesson, The Carpentries",
+  "keywords": "software, data, lesson",
   "name": "Key Points",
   "creativeWorkStatus": "active",
   "url": "melbournebioinformatics.github.io/mb-varnish/instructor/key-points.html",
diff --git a/instructor/profiles.html b/instructor/profiles.html
index 9eb0b59..3ff574b 100644
--- a/instructor/profiles.html
+++ b/instructor/profiles.html
@@ -273,12 +273,12 @@ <h1>Learner Profiles</h1>
         <p>This lesson is subject to the <a href="CODE_OF_CONDUCT.html">Code of Conduct</a></p>
         <p>
 
-        <a href="https://github.com/carpentries/workbench-template-rmd/edit/main/README.md" class="external-link">Edit on GitHub</a>
+        <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/edit/main/README.md" class="external-link">Edit on GitHub</a>
 
 	
-        | <a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
-        | <a href="https://github.com/carpentries/workbench-template-rmd/" class="external-link">Source</a></p>
-				<p><a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:team@carpentries.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/" class="external-link">Source</a></p>
+				<p><a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:fixme@fixme.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
 			</div>
 			<div class="col-md-6">
 
@@ -301,7 +301,7 @@ <h1>Learner Profiles</h1>
   "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
-  "keywords": "software, data, lesson, The Carpentries",
+  "keywords": "software, data, lesson",
   "name": "Learner Profiles",
   "creativeWorkStatus": "active",
   "url": "melbournebioinformatics.github.io/mb-varnish/instructor/profiles.html",
diff --git a/instructor/reference.html b/instructor/reference.html
index b1e992d..e5ad8f3 100644
--- a/instructor/reference.html
+++ b/instructor/reference.html
@@ -272,7 +272,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
         <h1>Reference</h1>
         <p>Last updated on 2024-12-09 |
 
-        <a href="https://github.com/carpentries/workbench-template-rmd/edit/main/learners/reference.md" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
+        <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/edit/main/learners/reference.md" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
 
 
 
@@ -313,12 +313,12 @@ <h1>Reference</h1>
         <p>This lesson is subject to the <a href="CODE_OF_CONDUCT.html">Code of Conduct</a></p>
         <p>
 
-        <a href="https://github.com/carpentries/workbench-template-rmd/edit/main/learners/reference.md" class="external-link">Edit on GitHub</a>
+        <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/edit/main/learners/reference.md" class="external-link">Edit on GitHub</a>
 
 	
-        | <a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
-        | <a href="https://github.com/carpentries/workbench-template-rmd/" class="external-link">Source</a></p>
-				<p><a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:team@carpentries.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/" class="external-link">Source</a></p>
+				<p><a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:fixme@fixme.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
 			</div>
 			<div class="col-md-6">
 
@@ -341,7 +341,7 @@ <h1>Reference</h1>
   "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
-  "keywords": "software, data, lesson, The Carpentries",
+  "keywords": "software, data, lesson",
   "name": "Reference",
   "creativeWorkStatus": "active",
   "url": "melbournebioinformatics.github.io/mb-varnish/instructor/reference.html",
diff --git a/introduction.html b/introduction.html
index 661b30b..3c7ff8e 100644
--- a/introduction.html
+++ b/introduction.html
@@ -285,7 +285,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
         <h1>Using RMarkdown</h1>
         <p>Last updated on 2024-12-09 |
 
-        <a href="https://github.com/carpentries/workbench-template-rmd/edit/main/episodes/introduction.Rmd" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
+        <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/edit/main/episodes/introduction.Rmd" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
 
 
 
@@ -359,7 +359,7 @@ <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Output </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <div class="codewrapper">
 <h3 class="code-label">OUTPUT<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -386,7 +386,7 @@ <h3 class="callout-title">Challenge 2: how do you nest solutions within challeng
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <p>You can add a line with at least three colons and a
 <code>solution</code> tag.</p>
@@ -480,12 +480,12 @@ <h3 class="callout-title">Key Points</h3>
         <p>This lesson is subject to the <a href="CODE_OF_CONDUCT.html">Code of Conduct</a></p>
         <p>
 
-        <a href="https://github.com/carpentries/workbench-template-rmd/edit/main/episodes/introduction.Rmd" class="external-link">Edit on GitHub</a>
+        <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/edit/main/episodes/introduction.Rmd" class="external-link">Edit on GitHub</a>
 
 	
-        | <a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
-        | <a href="https://github.com/carpentries/workbench-template-rmd/" class="external-link">Source</a></p>
-				<p><a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:team@carpentries.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/" class="external-link">Source</a></p>
+				<p><a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:fixme@fixme.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
 			</div>
 			<div class="col-md-6">
 
@@ -508,7 +508,7 @@ <h3 class="callout-title">Key Points</h3>
   "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
-  "keywords": "software, data, lesson, The Carpentries",
+  "keywords": "software, data, lesson",
   "name": "Using RMarkdown",
   "creativeWorkStatus": "active",
   "url": "melbournebioinformatics.github.io/mb-varnish/introduction.html",
diff --git a/key-points.html b/key-points.html
index 4aa1bcb..a69ee7a 100644
--- a/key-points.html
+++ b/key-points.html
@@ -330,12 +330,12 @@ <h2 class="accordion-header" id="flush-headingTwelve">
         <p>This lesson is subject to the <a href="CODE_OF_CONDUCT.html">Code of Conduct</a></p>
         <p>
 
-        <a href="https://github.com/carpentries/workbench-template-rmd/edit/main/README.md" class="external-link">Edit on GitHub</a>
+        <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/edit/main/README.md" class="external-link">Edit on GitHub</a>
 
 	
-        | <a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
-        | <a href="https://github.com/carpentries/workbench-template-rmd/" class="external-link">Source</a></p>
-				<p><a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:team@carpentries.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/" class="external-link">Source</a></p>
+				<p><a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:fixme@fixme.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
 			</div>
 			<div class="col-md-6">
 
@@ -359,7 +359,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
-  "keywords": "software, data, lesson, The Carpentries",
+  "keywords": "software, data, lesson",
   "name": "Key Points",
   "creativeWorkStatus": "active",
   "url": "melbournebioinformatics.github.io/mb-varnish/key-points.html",
diff --git a/md5sum.txt b/md5sum.txt
index 0406099..30614e2 100644
--- a/md5sum.txt
+++ b/md5sum.txt
@@ -1,7 +1,7 @@
 "file" "checksum" "built" "date"
 "CODE_OF_CONDUCT.md" "c93c83c630db2fe2462240bf72552548" "site/built/CODE_OF_CONDUCT.md" "2024-12-09"
 "LICENSE.md" "b24ebbb41b14ca25cf6b8216dda83e5f" "site/built/LICENSE.md" "2024-12-09"
-"config.yaml" "773b66819c8383a770f7b864a51ab9bf" "site/built/config.yaml" "2024-12-09"
+"config.yaml" "34fdeccc32b9ae2c5ae5b559224580a1" "site/built/config.yaml" "2024-12-09"
 "index.md" "a02c9c785ed98ddd84fe3d34ddb12fcd" "site/built/index.md" "2024-12-09"
 "links.md" "8184cf4149eafbf03ce8da8ff0778c14" "site/built/links.md" "2024-12-09"
 "episodes/introduction.Rmd" "6370d5592eae179125841d442e98df54" "site/built/introduction.md" "2024-12-09"
diff --git a/pkgdown.yml b/pkgdown.yml
index 1ae4ae6..0f1e0b1 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -2,4 +2,4 @@ pandoc: 3.1.11
 pkgdown: 2.1.1
 pkgdown_sha: ~
 articles: {}
-last_built: 2024-12-09T03:35Z
+last_built: 2024-12-09T04:50Z
diff --git a/profiles.html b/profiles.html
index 4f28310..413d277 100644
--- a/profiles.html
+++ b/profiles.html
@@ -273,12 +273,12 @@ <h1>Learner Profiles</h1>
         <p>This lesson is subject to the <a href="CODE_OF_CONDUCT.html">Code of Conduct</a></p>
         <p>
 
-        <a href="https://github.com/carpentries/workbench-template-rmd/edit/main/README.md" class="external-link">Edit on GitHub</a>
+        <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/edit/main/README.md" class="external-link">Edit on GitHub</a>
 
 	
-        | <a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
-        | <a href="https://github.com/carpentries/workbench-template-rmd/" class="external-link">Source</a></p>
-				<p><a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:team@carpentries.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/" class="external-link">Source</a></p>
+				<p><a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:fixme@fixme.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
 			</div>
 			<div class="col-md-6">
 
@@ -301,7 +301,7 @@ <h1>Learner Profiles</h1>
   "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
-  "keywords": "software, data, lesson, The Carpentries",
+  "keywords": "software, data, lesson",
   "name": "Learner Profiles",
   "creativeWorkStatus": "active",
   "url": "melbournebioinformatics.github.io/mb-varnish/profiles.html",
diff --git a/reference.html b/reference.html
index 8fad35d..10e1c36 100644
--- a/reference.html
+++ b/reference.html
@@ -272,7 +272,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
         <h1>Reference</h1>
         <p>Last updated on 2024-12-09 |
 
-        <a href="https://github.com/carpentries/workbench-template-rmd/edit/main/learners/reference.md" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
+        <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/edit/main/learners/reference.md" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
 
 
 
@@ -311,12 +311,12 @@ <h1>Reference</h1>
         <p>This lesson is subject to the <a href="CODE_OF_CONDUCT.html">Code of Conduct</a></p>
         <p>
 
-        <a href="https://github.com/carpentries/workbench-template-rmd/edit/main/learners/reference.md" class="external-link">Edit on GitHub</a>
+        <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/edit/main/learners/reference.md" class="external-link">Edit on GitHub</a>
 
 	
-        | <a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
-        | <a href="https://github.com/carpentries/workbench-template-rmd/" class="external-link">Source</a></p>
-				<p><a href="https://github.com/carpentries/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:team@carpentries.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CONTRIBUTING.md" class="external-link">Contributing</a>
+        | <a href="https://github.com/melbournebioinformatics/workbench-template-rmd/" class="external-link">Source</a></p>
+				<p><a href="https://github.com/melbournebioinformatics/workbench-template-rmd/blob/main/CITATION.cff" class="external-link">Cite</a> | <a href="mailto:fixme@fixme.org">Contact</a> | <a href="https://carpentries.org/about/" class="external-link">About</a></p>
 			</div>
 			<div class="col-md-6">
 
@@ -339,7 +339,7 @@ <h1>Reference</h1>
   "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
-  "keywords": "software, data, lesson, The Carpentries",
+  "keywords": "software, data, lesson",
   "name": "Reference",
   "creativeWorkStatus": "active",
   "url": "melbournebioinformatics.github.io/mb-varnish/reference.html",
diff --git a/renv.lock b/renv.lock
index d5e6b4a..4897a0a 100644
--- a/renv.lock
+++ b/renv.lock
@@ -1,6 +1,6 @@
 {
   "R": {
-    "Version": "4.4.1",
+    "Version": "4.4.2",
     "Repositories": [
       {
         "Name": "carpentries",
diff --git a/sitemap.xml b/sitemap.xml
index d20693c..7def678 100644
--- a/sitemap.xml
+++ b/sitemap.xml
@@ -9,6 +9,12 @@
   <url>
     <loc>melbournebioinformatics.github.io/mb-varnish/LICENSE.html</loc>
   </url>
+  <url>
+    <loc>melbournebioinformatics.github.io/mb-varnish/aio.html</loc>
+  </url>
+  <url>
+    <loc>melbournebioinformatics.github.io/mb-varnish/images.html</loc>
+  </url>
   <url>
     <loc>melbournebioinformatics.github.io/mb-varnish/index.html</loc>
   </url>
@@ -21,21 +27,39 @@
   <url>
     <loc>melbournebioinformatics.github.io/mb-varnish/instructor/LICENSE.html</loc>
   </url>
+  <url>
+    <loc>melbournebioinformatics.github.io/mb-varnish/instructor/aio.html</loc>
+  </url>
+  <url>
+    <loc>melbournebioinformatics.github.io/mb-varnish/instructor/images.html</loc>
+  </url>
   <url>
     <loc>melbournebioinformatics.github.io/mb-varnish/instructor/index.html</loc>
   </url>
+  <url>
+    <loc>melbournebioinformatics.github.io/mb-varnish/instructor/instructor-notes.html</loc>
+  </url>
   <url>
     <loc>melbournebioinformatics.github.io/mb-varnish/instructor/introduction.html</loc>
   </url>
+  <url>
+    <loc>melbournebioinformatics.github.io/mb-varnish/instructor/key-points.html</loc>
+  </url>
   <url>
     <loc>melbournebioinformatics.github.io/mb-varnish/instructor/profiles.html</loc>
   </url>
   <url>
     <loc>melbournebioinformatics.github.io/mb-varnish/instructor/reference.html</loc>
   </url>
+  <url>
+    <loc>melbournebioinformatics.github.io/mb-varnish/instructor-notes.html</loc>
+  </url>
   <url>
     <loc>melbournebioinformatics.github.io/mb-varnish/introduction.html</loc>
   </url>
+  <url>
+    <loc>melbournebioinformatics.github.io/mb-varnish/key-points.html</loc>
+  </url>
   <url>
     <loc>melbournebioinformatics.github.io/mb-varnish/profiles.html</loc>
   </url>