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<title>Introduction to MassWateR</title>
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<body class="quarto-light">
<div class="reveal">
<div class="slides">
<section id="title-slide" class="quarto-title-block center">
<h1 class="title">Introduction to MassWateR</h1>
<div class="quarto-title-authors">
<div class="quarto-title-author">
<div class="quarto-title-author-name">
Dr. Marcus Beck, <a href="mailto:[email protected]" class="email">[email protected]</a>
</div>
<p class="quarto-title-affiliation">
Tampa Bay Estuary Program
</p>
</div>
</div>
<p class="date">9/16/22</p>
</section>
<section id="what-is-masswater" class="slide level2">
<h2>WHAT IS MASSWATER?</h2>
<div class="columns">
<div class="column" style="width:60%;">
<p>An R package for working with Massachusetts surface water quality data</p>
<ul>
<li>Summarize quality control checks and create reports</li>
<li>Evaluate outliers</li>
<li>Plot trends by site, date</li>
<li>Create maps</li>
<li>Format results for upload to WQX</li>
</ul>
</div><div class="column" style="width:40%;">
<div class="quarto-figure quarto-figure-center">
<figure>
<p><img data-src="figure/logo.png" width="250"></p>
</figure>
</div>
</div>
</div>
</section>
<section id="what-is-masswater-1" class="slide level2">
<h2>WHAT IS MASSWATER?</h2>
<p>A workflow to solve your data woes!</p>
<img data-src="figure/workflow.PNG" class="r-stretch quarto-figure-center"></section>
<section id="website" class="slide level2">
<h2>WEBSITE</h2>
<p>Installation instructions, function help files, vignettes!</p>
<img data-src="figure/website.png" class="r-stretch quarto-figure-center"></section>
<section id="required-data" class="slide level2">
<h2>REQUIRED DATA</h2>
<ul>
<li><a href="https://massbays-tech.github.io/MassWateR/MassWateR_Results_Template.xlsx" style="color: #64C147">Water quality data results file</a></li>
<li>Data quality objective files (<a href="https://massbays-tech.github.io/MassWateR/MassWateR_DQOAccuracy_Template.xlsx" style="color: #64C147">accuracy</a>, <a href="https://massbays-tech.github.io/MassWateR/MassWateR_DQOFreqComp_Template.xlsx" style="color: #64C147">frequency, completeness</a>)</li>
<li><a href="https://massbays-tech.github.io/MassWateR/MassWateR_Sites_Template.xlsx" style="color: #64C147">Site metadata</a> (location, site groups, etc.)</li>
<li><a href="https://massbays-tech.github.io/MassWateR/MassWateR_WQXMeta_Template.xlsx" style="color: #64C147">WQX metadata</a></li>
</ul>
<div class="callout callout-note callout-captioned callout-style-default">
<div class="callout-body">
<div class="callout-caption">
<div class="callout-icon-container">
<i class="callout-icon"></i>
</div>
<p><strong>Templates</strong></p>
</div>
<div class="callout-content">
<p>All data must be formatted using available templates, which you are already have! The package includes automated data checks to verify the correct format.</p>
</div>
</div>
</div>
</section>
<section id="qc-review" class="slide level2">
<h2>QC REVIEW</h2>
<div class="cell">
<div class="sourceCode cell-code" id="cb1"><pre class="sourceCode numberSource r number-lines code-with-copy"><code class="sourceCode r"><span id="cb1-1"><a href="#cb1-1"></a><span class="fu">qcMWRreview</span>(<span class="at">res =</span> resdat, <span class="at">acc =</span> accdat, <span class="at">frecom =</span> frecomdat, <span class="at">output_dir =</span> <span class="fu">getwd</span>())</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<img data-src="figure/qcreport.png" width="579" class="r-stretch quarto-figure-center"><p><a href="supp/qcreview.pdf" style="color: #64C147">view report</a></p>
</section>
<section id="outlier-review" class="slide level2">
<h2>OUTLIER REVIEW</h2>
<div class="cell">
<div class="sourceCode cell-code" id="cb2"><pre class="sourceCode numberSource r number-lines code-with-copy"><code class="sourceCode r"><span id="cb2-1"><a href="#cb2-1"></a><span class="fu">anlzMWRoutlier</span>(<span class="at">res =</span> resdat, <span class="at">param =</span> <span class="st">"DO"</span>, <span class="at">acc =</span> accdat, <span class="at">group =</span> <span class="st">"month"</span>)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<img data-src="index_files/figure-revealjs/unnamed-chunk-3-1.png" width="960" class="r-stretch"></section>
<section id="seasonal-analysis" class="slide level2">
<h2>SEASONAL ANALYSIS</h2>
<div class="cell">
<div class="sourceCode cell-code" id="cb3"><pre class="sourceCode numberSource r number-lines code-with-copy"><code class="sourceCode r"><span id="cb3-1"><a href="#cb3-1"></a><span class="fu">anlzMWRseason</span>(<span class="at">res =</span> resdat, <span class="at">param =</span> <span class="st">"DO"</span>, <span class="at">acc =</span> accdat, <span class="at">thresh =</span> <span class="st">"fresh"</span>, <span class="at">group =</span> <span class="st">"month"</span>, <span class="at">type =</span> <span class="st">"jitterbar"</span>)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<img data-src="index_files/figure-revealjs/unnamed-chunk-4-1.png" width="960" class="r-stretch"></section>
<section id="time-series-analysis" class="slide level2">
<h2>TIME-SERIES ANALYSIS</h2>
<div class="cell">
<div class="sourceCode cell-code" id="cb4"><pre class="sourceCode numberSource r number-lines code-with-copy"><code class="sourceCode r"><span id="cb4-1"><a href="#cb4-1"></a><span class="fu">anlzMWRdate</span>(<span class="at">res =</span> resdat, <span class="at">param =</span> <span class="st">"DO"</span>, <span class="at">acc =</span> accdat, <span class="at">thresh =</span> <span class="st">"fresh"</span>, <span class="at">group =</span> <span class="st">"site"</span>, <span class="at">site =</span> <span class="fu">c</span>(<span class="st">"ABT-026"</span>, <span class="st">"ABT-077"</span>))</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<img data-src="index_files/figure-revealjs/unnamed-chunk-5-1.png" width="960" class="r-stretch"></section>
<section id="site-analysis" class="slide level2">
<h2>SITE ANALYSIS</h2>
<div class="cell">
<div class="sourceCode cell-code" id="cb5"><pre class="sourceCode numberSource r number-lines code-with-copy"><code class="sourceCode r"><span id="cb5-1"><a href="#cb5-1"></a><span class="fu">anlzMWRsite</span>(<span class="at">res =</span> resdat, <span class="at">param =</span> <span class="st">"DO"</span>, <span class="at">acc =</span> accdat, <span class="at">thresh =</span> <span class="st">"fresh"</span>, <span class="at">type =</span> <span class="st">"bar"</span>, <span class="at">confint =</span> T)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<img data-src="index_files/figure-revealjs/unnamed-chunk-6-1.png" width="960" class="r-stretch"></section>
<section id="map-analysis" class="slide level2">
<h2>MAP ANALYSIS</h2>
<div class="cell">
<div class="sourceCode cell-code" id="cb6"><pre class="sourceCode numberSource r number-lines code-with-copy"><code class="sourceCode r"><span id="cb6-1"><a href="#cb6-1"></a><span class="fu">anlzMWRmap</span>(<span class="at">res =</span> resdat, <span class="at">param =</span> <span class="st">"DO"</span>, <span class="at">acc =</span> accdat, <span class="at">sit =</span> sitdat, <span class="at">addwater =</span> <span class="st">"medium"</span>, <span class="at">warn =</span> F)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<img data-src="index_files/figure-revealjs/unnamed-chunk-7-1.png" width="960" class="r-stretch"></section>
<section id="wqx-formatting" class="slide level2">
<h2>WQX FORMATTING</h2>
<div class="cell">
<div class="sourceCode cell-code" id="cb7"><pre class="sourceCode numberSource r number-lines code-with-copy"><code class="sourceCode r"><span id="cb7-1"><a href="#cb7-1"></a><span class="fu">tabMWRwqx</span>(<span class="at">res =</span> resdat, <span class="at">acc =</span> accdat, <span class="at">sit =</span> sitdat, <span class="at">wqx =</span> wqxdat, <span class="at">output_dir =</span> <span class="fu">getwd</span>())</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
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