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check variable + unit format in rds_report #743

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merged 3 commits into from
Nov 4, 2024
Merged

check variable + unit format in rds_report #743

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227eb63
check unit format in rds_report
pascal-sauer Nov 1, 2024
a5b6b22
clarify
pascal-sauer Nov 1, 2024
af0fa82
linter
pascal-sauer Nov 1, 2024
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42 changes: 25 additions & 17 deletions scripts/output/rds_report.R
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Original file line number Diff line number Diff line change
Expand Up @@ -22,7 +22,7 @@ library(piamutils)
options("magclass.verbosity" = 1)

############################# BASIC CONFIGURATION #############################
if(!exists("source_include")) {
if (!exists("source_include")) {
outputdir <- "/p/projects/landuse/users/miodrag/projects/tests/flexreg/output/H12_setup1_2016-11-23_12.38.56/"
readArgs("outputdir")
}
Expand All @@ -37,33 +37,42 @@ resultsarchive <- "/p/projects/rd3mod/models/results/magpie"


report <- getReport(gdx, scenario = cfg$title, dir = outputdir)
if (!all(grepl(" \\(([^\\()]*)\\)($|\\.)", getNames(report, fulldim = TRUE)$variable))) {
warning("Variables should be in the format 'name (unit)' (the space between name and unit is important), ",
"but the following are not:\n",
paste(grep(" \\(([^\\()]*)\\)($|\\.)", getNames(report, fulldim = TRUE)$variable,
invert = TRUE, value = TRUE), collapse = "\n"))
}

for (mapping in c("AR6", "NAVIGATE", "SHAPE", "AR6_MAgPIE")) {
missingVariables <- sort(setdiff(unique(deletePlus(getMappingVariables(mapping, "M"))), unique(deletePlus(getNames(report, dim = "variable")))))
missingVariables <- sort(setdiff(unique(deletePlus(getMappingVariables(mapping, "M"))),
unique(deletePlus(getNames(report, dim = "variable")))))
if (length(missingVariables) > 0) {
warning("# The following ", length(missingVariables), " variables are expected in the piamInterfaces package ",
"for mapping ", mapping, ", but cannot be found in the MAgPIE report.\nPlease either fix in magpie4 or adjust the mapping in piamInterfaces.\n- ",
"for mapping ", mapping, ", but cannot be found in the MAgPIE report.\n",
"Please either fix in magpie4 or adjust the mapping in piamInterfaces.\n- ",
paste(missingVariables, collapse = ",\n- "), "\n")
}
}

write.report(report, file = mif)
report <- read.report(file = mif, as.list = FALSE)

q <- as.quitte(report)
qu <- as.quitte(report)
# as.quitte converts "World" into "GLO". But we want to keep "World" and therefore undo these changes
q <- droplevels(q)
levels(q$region)[levels(q$region) == "GLO"] <- "World"
q$region <- factor(q$region,levels = sort(levels(q$region)))
qu <- droplevels(qu)
levels(qu$region)[levels(qu$region) == "GLO"] <- "World"
qu$region <- factor(qu$region,levels = sort(levels(qu$region)))

if(all(is.na(q$value))) stop("No values in reporting!")
if (all(is.na(qu$value))) {
stop("No values in reporting!")
}

saveRDS(q, file = rds, version = 2)
saveRDS(qu, file = rds, version = 2)

if(file.exists(runstatistics) & dir.exists(resultsarchive)) {
if (file.exists(runstatistics) && dir.exists(resultsarchive)) {
stats <- list()
load(runstatistics)
if(is.null(stats$id)) {
if (is.null(stats$id)) {
# create an id if it does not exist (which means that statistics have not
# been saved to the archive before) and save statistics to the archive
message("No id found in runstatistics.rda. Calling lucode2::runstatistics() to create one.")
Expand All @@ -75,9 +84,8 @@ if(file.exists(runstatistics) & dir.exists(resultsarchive)) {
}

# Save report to results archive
saveRDS(q, file = paste0(resultsarchive, "/", stats$id, ".rds"), version = 2)
cwd <- getwd()
setwd(resultsarchive)
system("find -type f -name '1*.rds' -printf '%f\n' | sort > fileListForShinyresults")
setwd(cwd)
saveRDS(qu, file = paste0(resultsarchive, "/", stats$id, ".rds"), version = 2)
withr::with_dir(resultsarchive, {
system("find -type f -name '1*.rds' -printf '%f\n' | sort > fileListForShinyresults")
})
}
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