From 79f0f9508c71e6f70245604d929162e5d33aa05d Mon Sep 17 00:00:00 2001 From: Magnus Dehli Vigeland Date: Sat, 14 Nov 2020 10:46:05 +0100 Subject: [PATCH] Update NEWS --- NEWS.md | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/NEWS.md b/NEWS.md index 8f1220e..43dfdb8 100644 --- a/NEWS.md +++ b/NEWS.md @@ -2,7 +2,7 @@ ## Breaking changes -* `getMap(na.action = 1)` is re-implemented and now behaves slightly differently. This enables `pedprobr::merlin()` to handle linked markers better. +* `getMap(na.action = 1)` is re-implemented and now behaves slightly differently. (This was necessary to improve the handling of linked markers in `pedprobr::merlin()`.) * The order of individuals in `linearPed()` now always follows the "asPlot" pattern, as for the other basic pedigrees. (Missed this in the previous version.) @@ -10,9 +10,11 @@ * `plot.ped()` gains arguments `textInside`, `textAbove` and `carrier`. -* In `setMarkers()` and friends, the shortcut `locusAttributes = "snp-12" may be used to indicate that all supplied markers are SNPs with alleles 1 and 2. Other shortcuts are "snp-ab" and "snp-AB". +* `transferMarkers()` has new arguments `fromIds` and `toIds` enabling transfer between differently-named individuals. -* `setMap()` is extended to pedlists. +* In `setMarkers()` and friends, the shortcut `locusAttributes = "snp-12"` may be used to indicate that all supplied markers are SNPs with alleles 1 and 2. Further shortcuts are "snp-ab" and "snp-AB". + +* `setMap()` is extended to ped lists. # pedtools 0.9.5