From 0dc815392428a921d0234f51d0ff710a60354a7f Mon Sep 17 00:00:00 2001
From: magnusdv <magnusdv@medisin.uio.no>
Date: Fri, 11 Dec 2015 13:14:31 +0100
Subject: [PATCH] prepare pip package

---
 filtus/Filtus.py | 27 ++++++++++++++------------
 requirements.txt |  2 ++
 setup.cfg        |  2 ++
 setup.py         | 50 ++++++++++++++++++++++++++++++++++++++++++++++++
 4 files changed, 69 insertions(+), 12 deletions(-)
 create mode 100644 requirements.txt
 create mode 100644 setup.cfg
 create mode 100644 setup.py

diff --git a/filtus/Filtus.py b/filtus/Filtus.py
index 5ffe9da..42bef39 100644
--- a/filtus/Filtus.py
+++ b/filtus/Filtus.py
@@ -658,13 +658,12 @@ def notbusy(self):
         self.widgets = {}
         self.isBusy = False
 
-root = Pmw.initialise()
-filtus = FiltusGUI(root)
-#root.mainloop() # moved to bottom of file
 
+def main():
+    root = Pmw.initialise()
+    filtus = FiltusGUI(root)
+    #root.mainloop() # moved to bottom of file
 
-if __name__ == "__main__":
-    
     printVF = FiltusAnalysis._printVF
     test_csv = ["example_files\\test%d.csv" %i for i in (1,2)]
     test_vcf = "example_files\\vcf_test.vcf"
@@ -838,12 +837,16 @@ def test_plink():
             print 'all tests passed'
         else:
             locals()[sys.argv[1]]()
+         
+    try:
+        root.mainloop()
+    except KeyboardInterrupt:
+        root.destroy()
+    except Exception as e:
+        print e
+        root.destroy()
+       
+if __name__ == "__main__":
+    main()
     
-try:
-    root.mainloop()
-except KeyboardInterrupt:
-    root.destroy()
-except Exception as e:
-    print e
-    root.destroy()
     
\ No newline at end of file
diff --git a/requirements.txt b/requirements.txt
new file mode 100644
index 0000000..56d7262
--- /dev/null
+++ b/requirements.txt
@@ -0,0 +1,2 @@
+matplotlib==1.5.0
+pmw==2.0.1
\ No newline at end of file
diff --git a/setup.cfg b/setup.cfg
new file mode 100644
index 0000000..b88034e
--- /dev/null
+++ b/setup.cfg
@@ -0,0 +1,2 @@
+[metadata]
+description-file = README.md
diff --git a/setup.py b/setup.py
new file mode 100644
index 0000000..68101b1
--- /dev/null
+++ b/setup.py
@@ -0,0 +1,50 @@
+#!/usr/bin/env python
+
+try:
+    from setuptools import setup
+except ImportError:
+    from distutils.core import setup
+
+config = {
+    'name': 'filtus',
+    'version': '1.0.0',
+    'description': 'Analysis of exome variant files',
+    'long_description': open('README.md').read(),
+    'author': 'Magnus Dehli Vigeland',
+    'author_email': 'magnusdv@medisin.uio.no',
+    'license': 'GPL-2',
+    'url': 'https://github.com/magnusdv/filtus',
+    'download_url': 'https://github.com/magnusdv/filtus/tarball/v1.0.0',
+    'install_requires': [
+        'matplotlib',
+        'pmw'
+    ],
+    'packages': [
+        'filtus'
+    ],
+    'classifiers': [
+        'Programming Language :: Python :: 2.7',
+        'License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)'
+    ],
+    'keywords': [
+        'exome',
+        'variant filtering',
+        'vcf',
+        'de novo',
+        'autozygosity mapping'
+    ],
+    'entry_points': {
+        'console_scripts': [
+            'filtus = filtus.Filtus:main'
+        ]
+    },
+    'package_data': {
+        'filtus': [
+            'man',
+            'data',
+            'testfiles'
+        ]
+    }
+}
+
+setup(**config)