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WARNING probe version 2013.0 not handled #403

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ktyssowski opened this issue Dec 12, 2024 · 1 comment
Open

WARNING probe version 2013.0 not handled #403

ktyssowski opened this issue Dec 12, 2024 · 1 comment

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@ktyssowski
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I'm getting this error -- see below for traceback and meta file.
Thanks!!

Here's the traceback:

WARNING probe version 2013.0 not handled - post an issue at www.github.com/m-beau/NeuroPyxels and provide your .ap.meta file.

---------------------------------------------------------------------------
ValueError                                Traceback (most recent call last)
Cell In[24], line 1
----> 1 M411_20241211_g1_imec0 = spike2array_one('M411_20241211_g1/M411_20241211_g1_imec0/')

Cell In[22], line 33, in spike2array_one(dir_imec, laser)
     30 sync_nidq=sync_all/sRate*1000
     32 #get sync times -- imec
---> 33 onsets, offsets = get_npix_sync(dir_imec, filt_key='highpass')
     34 sync_imec = onsets[6]*1000
     36 # get camera start times

File /n/hoekstra_lab_tier1/Users/ktyssowski/envs/npx/lib/python3.11/site-packages/npyx/inout.py:485, in get_npix_sync(dp, output_binary, filt_key, unit, verbose, again, sample_span)
    482 assert unit in ['seconds', 'samples']
    484 sync_dp = dp / 'sync_chan'
--> 485 meta    = read_metadata(dp)
    486 srate   = meta[filt_key]['sampling_rate'] if unit=='seconds' else 1
    488 # initialize variables

File /n/hoekstra_lab_tier1/Users/ktyssowski/envs/npx/lib/python3.11/site-packages/npyx/inout.py:48, in read_metadata(dp)
     46         meta[probe] = metadata(dpx)
     47 else:
---> 48     meta = metadata(dp)
     50 return meta

File /n/hoekstra_lab_tier1/Users/ktyssowski/envs/npx/lib/python3.11/site-packages/npyx/inout.py:246, in metadata(dp)
    244     ampFactor=80 # hardcoded
    245 else:
--> 246     raise ValueError(f"Probe version unhandled - bits_encoding unknown.")
    247 meta['bit_uV_conv_factor']=(Vrange/2**bits_encoding/ampFactor)
    250 # find everything else

ValueError: Probe version unhandled - bits_encoding unknown.

And here is the meta file:

acqApLfSy=384,0,1
appVersion=20240129
fileCreateTime=2024-12-11T12:15:23
fileName=C:/SGL_DATA/M411_20241211_g1/M411_20241211_g1_imec0/M411_20241211_g1_t0.imec0.ap.bin
fileSHA1=3B81EF737BCB6AC10EFAB89D96B705E75C1F9F54
fileSizeBytes=4089393770
fileTimeSecs=177.03003333333334
firstSample=225534638
gateMode=Immediate
imAiRangeMax=0.62
imAiRangeMin=-0.62
imAnyChanFullBand=true
imCalibrated=true
imChan0apGain=100
imDatApi=3.62
imDatBs_fw=2.0.169
imDatBsc_fw=3.2.189
imDatBsc_hw=2.1
imDatBsc_pn=NP2_QBSC_00
imDatBsc_sn=20170640
imDatFx_hw=0.1
imDatFx_pn=NPM_FLEX_01
imDatFx_sn=23500079
imDatHs_fw=0.0.0
imDatHs_hw=3.3
imDatHs_pn=NPM_HS_31
imDatHs_sn=23500079
imDatPrb_dock=1
imDatPrb_pn=NP2014
imDatPrb_port=1
imDatPrb_slot=3
imDatPrb_sn=23107818442
imDatPrb_type=2013
imErrFlags0_IS_CT_SR_LK_PP_SY=0 0 0 0 0 0
imErrFlags1_IS_CT_SR_LK_PP_SY=0 0 0 0 0 0
imIsSvyRun=false
imLEDEnable=false
imLowLatency=false
imMaxInt=2048
imSampRate=30000
imStdby=
imSvyMaxBnk=-1
imSvyNShanks=4
imSvySecPerBnk=35
imTipLength=206
imTrgRising=true
imTrgSource=0
imroFile=C:/Users/labadmin/Desktop/npix2_configs/IMROtables/from 20240819/new_probes_2013_bottom4/b4shank_bottomRow_jointTipRef_new.imro
nDataDirs=1
nSavedChans=385
snsApLfSy=384,0,1
snsSaveChanSubset=0:384
syncImInputSlot=3
syncSourceIdx=2
syncSourcePeriod=1
trigMode=Immediate
typeImEnabled=2
typeNiEnabled=1
typeObEnabled=0
typeThis=imec
userNotes=M410 Deer BW\n1st probe Imec0 @ RFA, shank1 @ A to shank4 @ P\n(2nd probe Imec1 @ DCN, shank1 @ M to shank 4 @L)\n2nd probe Imec1 @ CFA, shank1 @ M to shank 4 @ L\n(4th probe Imec3 @ PFC, shank1 @ A to shank 4 @P)
~imroTbl=(2013,384)(0 0 0 2 0)(1 0 0 3 1)(2 0 0 4 2)(3 0 0 5 3)(4 0 0 2 4)(5 0 0 2 5)(6 0 0 2 6)(7 0 0 2 7)(8 0 0 2 8)(9 0 0 2 9)(10 0 0 2 10)(11 0 0 2 11)(12 0 0 2 12)(13 0 0 2 13)(14 0 0 2 14)(15 0 0 2 15)(16 0 0 2 16)(17 0 0 2 17)(18 0 0 2 18)(19 0 0 2 19)(20 0 0 2 20)(21 0 0 2 21)(22 0 0 2 22)(23 0 0 2 23)(24 0 0 2 24)(25 0 0 2 25)(26 0 0 2 26)(27 0 0 2 27)(28 0 0 2 28)(29 0 0 2 29)(30 0 0 2 30)(31 0 0 2 31)(32 0 0 2 32)(33 0 0 2 33)(34 0 0 2 34)(35 0 0 2 35)(36 0 0 2 36)(37 0 0 2 37)(38 0 0 2 38)(39 0 0 2 39)(40 0 0 2 40)(41 0 0 2 41)(42 0 0 2 42)(43 0 0 2 43)(44 0 0 2 44)(45 0 0 2 45)(46 0 0 2 46)(47 0 0 2 47)(48 1 0 2 0)(49 1 0 2 1)(50 1 0 2 2)(51 1 0 2 3)(52 1 0 2 4)(53 1 0 2 5)(54 1 0 2 6)(55 1 0 2 7)(56 1 0 2 8)(57 1 0 2 9)(58 1 0 2 10)(59 1 0 2 11)(60 1 0 2 12)(61 1 0 2 13)(62 1 0 2 14)(63 1 0 2 15)(64 1 0 2 16)(65 1 0 2 17)(66 1 0 2 18)(67 1 0 2 19)(68 1 0 2 20)(69 1 0 2 21)(70 1 0 2 22)(71 1 0 2 23)(72 1 0 2 24)(73 1 0 2 25)(74 1 0 2 26)(75 1 0 2 27)(76 1 0 2 28)(77 1 0 2 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~muxTbl=(24,16)(0 1 32 33 64 65 96 97 128 129 160 161 192 193 224 225 256 257 288 289 320 321 352 353)(2 3 34 35 66 67 98 99 130 131 162 163 194 195 226 227 258 259 290 291 322 323 354 355)(4 5 36 37 68 69 100 101 132 133 164 165 196 197 228 229 260 261 292 293 324 325 356 357)(6 7 38 39 70 71 102 103 134 135 166 167 198 199 230 231 262 263 294 295 326 327 358 359)(8 9 40 41 72 73 104 105 136 137 168 169 200 201 232 233 264 265 296 297 328 329 360 361)(10 11 42 43 74 75 106 107 138 139 170 171 202 203 234 235 266 267 298 299 330 331 362 363)(12 13 44 45 76 77 108 109 140 141 172 173 204 205 236 237 268 269 300 301 332 333 364 365)(14 15 46 47 78 79 110 111 142 143 174 175 206 207 238 239 270 271 302 303 334 335 366 367)(16 17 48 49 80 81 112 113 144 145 176 177 208 209 240 241 272 273 304 305 336 337 368 369)(18 19 50 51 82 83 114 115 146 147 178 179 210 211 242 243 274 275 306 307 338 339 370 371)(20 21 52 53 84 85 116 117 148 149 180 181 212 213 244 245 276 277 308 309 340 341 372 373)(22 23 54 55 86 87 118 119 150 151 182 183 214 215 246 247 278 279 310 311 342 343 374 375)(24 25 56 57 88 89 120 121 152 153 184 185 216 217 248 249 280 281 312 313 344 345 376 377)(26 27 58 59 90 91 122 123 154 155 186 187 218 219 250 251 282 283 314 315 346 347 378 379)(28 29 60 61 92 93 124 125 156 157 188 189 220 221 252 253 284 285 316 317 348 349 380 381)(30 31 62 63 94 95 126 127 158 159 190 191 222 223 254 255 286 287 318 319 350 351 382 383)
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@ktyssowski
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I see that this was updated ~2 weeks ago. I updated to the newest version, and i no longer get the error, but I now get this warning:
Heads-up, the voltage range seems to be 1240000.0, which is not the default (10^6). Might be normal!

Is that to be expected?

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