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working with kilosort output #402

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PolarBean opened this issue Dec 11, 2024 · 1 comment
Open

working with kilosort output #402

PolarBean opened this issue Dec 11, 2024 · 1 comment

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@PolarBean
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Hi!

I am new to electrophysiology so may be making a rookie error. I am quite confused as to how I can load KiloSort4 output into npyx.
The kilosort output I am seeing is described here: https://github.com/cortex-lab/phy/blob/a1a8776a7b777c9fa2fe628e3a521219296b0530/docs/sorting_user_guide.md?plain=1#L50-L76

It consists of multiple .npy files

npyx says that it works with kilosort output however when I point it towards the directory containing the .npy files I get an error complaining about the lack of an oebin file.

Is there some fundamental error that I am making here?

Thank you in advance for your help and thank you for making this package.

@m-beau
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m-beau commented Dec 11, 2024

Hi there!

Hmmm this is a new bug! Thank you for reporting it. It might be because of the latest versions of Kilosort, which hasn't been thoroughly tested yet.

Could you share the error log with me here?

Maxime

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