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Hi,
I found an error when I use pyfastx.Fastq to parsing the long read FASTQ file.
The read.name untimely appearance in the end of read.seq string, such as 'GGCATTTTTCCGTTTGTCACTTCTTCTTCGCTATCCTGTT@390872df-5709-4012-8278-1f4969a328af ch=103 start_time=2021-01-21T19:40:20.617'.
The pyfastx version is 2.0.2. Can you check what this issue is?
code:
fq = pyfastx.Fastq('../test/ecoli.fq.gz')
for read in fq:
if '@' in read.seq:
print(read.name)
print(read.seq)
print(read.qual)
The text was updated successfully, but these errors were encountered:
Hi,
I found an error when I use pyfastx.Fastq to parsing the long read FASTQ file.
The read.name untimely appearance in the end of read.seq string, such as 'GGCATTTTTCCGTTTGTCACTTCTTCTTCGCTATCCTGTT@390872df-5709-4012-8278-1f4969a328af ch=103 start_time=2021-01-21T19:40:20.617'.
The pyfastx version is 2.0.2. Can you check what this issue is?
code:
fq = pyfastx.Fastq('../test/ecoli.fq.gz')
for read in fq:
if '@' in read.seq:
print(read.name)
print(read.seq)
print(read.qual)
The text was updated successfully, but these errors were encountered: