Install sphinx from docs/requirements. (#436)

* Install sphinx from docs/requirements. * Apply suggestions from code review Co-authored-by: Konstantin Malanchev <[email protected]> --------- Co-authored-by: Konstantin Malanchev <[email protected]>
lincc-frameworks · Feb 26, 2024 · 08135b0 · 08135b0
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diff --git a/docs/conf.py b/docs/conf.py
@@ -32,15 +32,15 @@
 # -- sphinx-copybutton configuration ----------------------------------------
 ## sets up the expected prompt text from console blocks, and excludes it from
 ## the text that goes into the clipboard.
-copybutton_exclude = '.linenos, .gp'
+copybutton_exclude = ".linenos, .gp"
 copybutton_prompt_text = ">> "
 
 ## lets us suppress the copy button on select code blocks.
 copybutton_selector = "div:not(.no-copybutton) > div.highlight > pre"
 
 # -- Options for autosectionlabel -------------------------------------------------
 
-autosectionlabel_prefix_document=True
+autosectionlabel_prefix_document = True
 
 # -- Options for HTML output -------------------------------------------------
 # https://www.sphinx-doc.org/en/master/usage/configuration.html#options-for-html-output

diff --git a/python-project-template/.initialize_new_project.sh b/python-project-template/.initialize_new_project.sh
@@ -44,6 +44,7 @@ python -m pip install -e . > /dev/null
 
 echo "Installing developer dependencies in local environment"
 python -m pip install -e .'[dev]' > /dev/null
+if [ -f docs/requirements.txt ]; then python -m pip install -r docs/requirements.txt; fi
 
 echo "Installing pre-commit"
 pre-commit install > /dev/null

diff --git a/python-project-template/.setup_dev.sh b/python-project-template/.setup_dev.sh
@@ -32,6 +32,7 @@ python -m pip install -e . > /dev/null
 
 echo "Installing developer dependencies in local environment"
 python -m pip install -e .'[dev]' > /dev/null
+if [ -f docs/requirements.txt ]; then python -m pip install -r docs/requirements.txt; fi
 
 echo "Installing pre-commit"
 pre-commit install > /dev/null

diff --git a/python-project-template/pyproject.toml.jinja b/python-project-template/pyproject.toml.jinja
@@ -20,9 +20,6 @@ classifiers = [
 dynamic = ["version"]
 requires-python = ">={{ python_versions[0] }}"
 dependencies = [
-{%- if include_notebooks %}
-    "ipykernel", # Support for Jupyter notebooks
-{%- endif %}
 ]
 
 [project.urls]
@@ -31,36 +28,23 @@ dependencies = [
 # On a mac, install optional dependencies with `pip install '.[dev]'` (include the single quotes)
 [project.optional-dependencies]
 dev = [
-    "pytest",
-    "pytest-cov", # Used to report total code coverage
-    "pre-commit", # Used to run checks before finalizing a git commit
-{%- if include_docs %}
-    "sphinx", # Used to automatically generate documentation
-    "sphinx-rtd-theme", # Used to render documentation
-    "sphinx-autoapi", # Used to automatically generate api documentation
-{%- endif %}
-{%- if 'pylint' in enforce_style %}
-    "pylint", # Used for static linting of files
+{%- if include_benchmarks %}
+    "asv==0.6.1", # Used to compute performance benchmarks
 {%- endif %}
 {%- if 'black'  in enforce_style %}
     "black", # Used for static linting of files
 {%- endif %}
-{%- if 'ruff_lint' in enforce_style or 'ruff_format' in enforce_style %}
-    "ruff", # Used for static linting of files
-{%- endif %}
 {%- if mypy_type_checking != 'none' %}
     "mypy", # Used for static type checking of files
 {%- endif %}
-{%- if include_notebooks %}
-    # if you add dependencies here while experimenting in a notebook and you
-    # want that notebook to render in your documentation, please add the
-    # dependencies to ./docs/requirements.txt as well.
-    "nbconvert", # Needed for pre-commit check to clear output from Python notebooks
-    "nbsphinx", # Used to integrate Python notebooks into Sphinx documentation
-    "ipython", # Also used in building notebooks into Sphinx
+    "pre-commit", # Used to run checks before finalizing a git commit
+{%- if 'pylint' in enforce_style %}
+    "pylint", # Used for static linting of files
 {%- endif %}
-{%- if include_benchmarks %}
-    "asv==0.6.1", # Used to compute performance benchmarks
+    "pytest",
+    "pytest-cov", # Used to report total code coverage
+{%- if 'ruff_lint' in enforce_style or 'ruff_format' in enforce_style %}
+    "ruff", # Used for static linting of files
 {%- endif %}
 ]
 

diff --git a/python-project-template/{% if include_docs %}docs{% endif %}/requirements.txt.jinja b/python-project-template/{% if include_docs %}docs{% endif %}/requirements.txt.jinja
@@ -1,10 +1,12 @@
-sphinx
-sphinx-rtd-theme
-sphinx-autoapi
-sphinx-copybutton
 {%- if include_notebooks %}
-nbsphinx
+ipykernel
 ipython
-jupytext
 jupyter
+jupytext
+nbconvert
+nbsphinx
 {%- endif %}
+sphinx
+sphinx-autoapi
+sphinx-copybutton
+sphinx-rtd-theme
diff --git a/tests/test_package_creation.py b/tests/test_package_creation.py
@@ -9,6 +9,26 @@ def successfully_created_project(result):
     return result.exit_code == 0 and result.exception is None and result.project_dir.is_dir()
 
 
+def contains_required_files(result):
+    required_files = [
+        ".copier-answers.yml",
+        ".git_archival.txt",
+        ".gitattributes",
+        ".gitignore",
+        ".pre-commit-config.yaml",
+        ".setup_dev.sh",
+        "LICENSE",
+        "pyproject.toml",
+        "README.md",
+    ]
+    all_found = True
+    for file in required_files:
+        if not (result.project_dir / file).is_file():
+            all_found = False
+            print("Required file not generated:", file)
+    return all_found
+
+
 def directory_structure_is_correct(result, package_name="example_package"):
     """Test to ensure that the default directory structure ws created correctly"""
     return (result.project_dir / f"src/{package_name}").is_dir() and (
@@ -65,14 +85,24 @@ def docs_build_successfully(result):
     virtual environment for the project.
     """
 
-    sphinx_results = subprocess.run(
-        ["make", "html"],
-        cwd=(result.project_dir / "docs"),
-    )
+    required_files = [
+        ".readthedocs.yml",
+    ]
+    all_found = True
+    for file in required_files:
+        if not (result.project_dir / file).is_file():
+            all_found = False
+            print("Required file not generated:", file)
+    return all_found
+
+    # sphinx_results = subprocess.run(
+    #     ["make", "html"],
+    #     cwd=(result.project_dir / "docs"),
+    # )
+
+    # return sphinx_results.returncode == 0
 
-    return sphinx_results.returncode == 0
 
-
 def github_workflows_are_valid(result):
     """Test to ensure that the GitHub workflows are valid"""
     workflows_results = subprocess.run(
@@ -95,14 +125,9 @@ def test_all_defaults(copie):
     result = copie.copy()
 
     assert successfully_created_project(result)
-
     assert directory_structure_is_correct(result)
-
     assert not pylint_runs_successfully(result)
-
-    # make sure that some basic files were created
-    assert (result.project_dir / "README.md").is_file()
-    assert (result.project_dir / "pyproject.toml").is_file()
+    assert contains_required_files(result)
 
     # check to see if the README file was hydrated with copier answers.
     found_line = False
@@ -130,10 +155,9 @@ def test_use_black_and_no_example_modules(copie):
     result = copie.copy(extra_answers=extra_answers)
 
     assert successfully_created_project(result)
-
     assert directory_structure_is_correct(result)
-
     assert pylint_runs_successfully(result)
+    assert contains_required_files(result)
 
     # make sure that the files that were not requested were not created
     assert not (result.project_dir / "src/example_package/example_module.py").is_file()
@@ -174,6 +198,7 @@ def test_code_style_combinations(copie, enforce_style):
     result = copie.copy(extra_answers=extra_answers)
     assert successfully_created_project(result)
     assert directory_structure_is_correct(result)
+    assert contains_required_files(result)
     # black would still run successfully.
     assert black_runs_successfully(result)
 
@@ -202,6 +227,7 @@ def test_smoke_test_notification(copie, notification):
     assert successfully_created_project(result)
     assert directory_structure_is_correct(result)
     assert black_runs_successfully(result)
+    assert contains_required_files(result)
 
 
 @pytest.mark.parametrize(
@@ -226,6 +252,8 @@ def test_doc_combinations(copie, doc_answers):
     assert successfully_created_project(result)
     assert directory_structure_is_correct(result)
     assert black_runs_successfully(result)
+    assert contains_required_files(result)
+    assert docs_build_successfully(result)
     assert (result.project_dir / "docs").is_dir()
 
 
@@ -251,9 +279,10 @@ def test_doc_combinations_no_docs(copie, doc_answers):
     assert successfully_created_project(result)
     assert directory_structure_is_correct(result)
     assert black_runs_successfully(result)
+    assert contains_required_files(result)
     assert not (result.project_dir / "docs").is_dir()
 
-    
+
 def test_github_workflows_schema(copie):
     """Confirm the current GitHub workflows have valid schemas."""
     extra_answers = {
@@ -263,3 +292,4 @@ def test_github_workflows_schema(copie):
     result = copie.copy(extra_answers=extra_answers)
     initialize_git_project(result)
     assert github_workflows_are_valid(result)
+    assert contains_required_files(result)