diff --git a/CHANGELOG.md b/CHANGELOG.md index 873836c..a3a8fcc 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,7 +1,14 @@ # lehtiolab/ddamsproteomics: Changelog +## Version 2.10 [2022-09-02] +- Bugfix to allow setnames with spaces etc (quoting) +- Dynamic memory allocation for MSGF +- Error message for often occurring DEqMS with only one channel in a sample group + + ## Version 2.9 [2022-06-02] - Bugfix to allow for user-formatted modification specifications again + ## Version 2.8 [2022-05-22] - Total proteome normalization had no keep-na-psms enabled when that was desired, fixed - Produce PEP column in merged peptide table (was only in PSM table earlier) diff --git a/Dockerfile b/Dockerfile index 2001fce..6afc221 100644 --- a/Dockerfile +++ b/Dockerfile @@ -5,4 +5,4 @@ RUN apt update && apt install -y fontconfig && apt clean -y COPY environment.yml / RUN conda env create -f /environment.yml && conda clean -a -ENV PATH /opt/conda/envs/ddamsproteomics-2.9/bin:$PATH +ENV PATH /opt/conda/envs/ddamsproteomics-2.10/bin:$PATH diff --git a/Singularity b/Singularity index 92626d6..7a28bbb 100644 --- a/Singularity +++ b/Singularity @@ -3,10 +3,10 @@ Bootstrap:docker %labels DESCRIPTION Singularity image containing all requirements for the lehtiolab/ddamsproteomics pipeline - VERSION 2.9 + VERSION 2.10 %environment - PATH=/opt/conda/envs/ddamsproteomics-2.9/bin:$PATH + PATH=/opt/conda/envs/ddamsproteomics-2.10/bin:$PATH export PATH %files diff --git a/environment.yml b/environment.yml index 89c7d13..5af97dd 100644 --- a/environment.yml +++ b/environment.yml @@ -1,4 +1,4 @@ -name: ddamsproteomics-2.9 +name: ddamsproteomics-2.10 channels: - bioconda - conda-forge diff --git a/nextflow.config b/nextflow.config index 6a736b4..25e3bbe 100644 --- a/nextflow.config +++ b/nextflow.config @@ -20,7 +20,7 @@ params { } // Container slug. Stable releases should specify release tag! -process.container = 'lehtiolab/ddamsproteomics:2.9' +process.container = 'lehtiolab/ddamsproteomics:2.10' //process.container = 'ddamsproteomics:dev' profiles { @@ -89,7 +89,7 @@ manifest { description = 'Quantitative DDA MS proteomics pipeline' mainScript = 'main.nf' nextflowVersion = '>=20.01.0' - version = '2.9' + version = '2.10' } // Function to ensure that resource requirements don't go beyond