-
Notifications
You must be signed in to change notification settings - Fork 0
/
resources_all.owl
7026 lines (5539 loc) · 393 KB
/
resources_all.owl
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
# Identifiers.org ontology
@prefix : <http://rdf.identifiers.org/ontology/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix sio: <http://semanticscience.org/resource/> .
@prefix mirc: <http://identifiers.org/miriam.collection/MIR:> .
@prefix mirr: <http://identifiers.org/miriam.resource/MIR:> .
<http://rdf.identifiers.org/ontology/>
rdf:type owl:Ontology ;
rdfs:label "Identifiers.org ontology" ;
rdfs:comment "Ontology for describing databases and entries in the Identifiers.org repository." ;
dct:license <http://creativecommons.org/publicdomain/zero/1.0/> ;
owl:versionInfo "Created on 2018-03-22"^^xsd:string .
:DataResource
rdf:type owl:Class ;
rdfs:label "DataResource" ;
rdfs:comment "An instance of a database entry described with an Identifiers.org URI." ;
skos:narrower sio:SIO_000756 . # sio:DatabaseEntry
:DataCollection
rdf:type owl:Class ;
rdfs:label "DataCollection" ;
rdfs:comment "An instance of a database described with an Identifiers.org URI." ;
skos:narrower sio:SIO_000089 . # sio:Dataset
:database
rdf:type owl:ObjectProperty ;
rdfs:label "is entry of" ;
rdfs:comment "A predicate for describing that a DataResource belongs to a DataCollection." ;
rdfs:domain :DataCollection ;
rdfs:range :DataResource ;
owl:subPropertyOf sio:SIO_000068 . # sio:is-part-of (or sio:SIO_001278 is-data-item-in)
<http://identifiers.org/3dmet>
rdf:type :DataCollection ;
rdfs:label "3DMET" ;
rdfs:comment "3DMET is a database collecting three-dimensional structures of natural metabolites." ;
dct:source mirc:00000066 ;
foaf:homepage <http://www.3dmet.dna.affrc.go.jp/> .
<http://www.3dmet.dna.affrc.go.jp/>
dct:publisher mirr:00100095 .
<http://identifiers.org/abs>
rdf:type :DataCollection ;
rdfs:label "ABS" ;
rdfs:comment "The database of Annotated regulatory Binding Sites (from orthologous promoters), ABS, is a public database of known binding sites identified in promoters of orthologous vertebrate genes that have been manually curated from bibliography." ;
dct:source mirc:00000277 ;
foaf:homepage <http://genome.crg.es/datasets/abs2005/> .
<http://genome.crg.es/datasets/abs2005/>
dct:publisher mirr:00100358 .
<http://identifiers.org/aceview.worm>
rdf:type :DataCollection ;
rdfs:label "Aceview Worm" ;
rdfs:comment "AceView provides a curated sequence representation of all public mRNA sequences (mRNAs from GenBank or RefSeq, and single pass cDNA sequences from dbEST and Trace). These are aligned on the genome and clustered into a minimal number of alternative transcript variants and grouped into genes. In addition, alternative features such as promoters, and expression in tissues is recorded. This collection references C. elegans genes and expression." ;
dct:source mirc:00000282 ;
foaf:homepage <http://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/index.html?worm> .
<http://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/index.html?worm>
dct:publisher mirr:00100363 .
<http://identifiers.org/aclame>
rdf:type :DataCollection ;
rdfs:label "Aclame" ;
rdfs:comment "ACLAME is a database dedicated to the collection and classification of mobile genetic elements (MGEs) from various sources, comprising all known phage genomes, plasmids and transposons." ;
dct:source mirc:00000063 ;
foaf:homepage <http://aclame.ulb.ac.be/> .
<http://aclame.ulb.ac.be/>
dct:publisher mirr:00100091 .
<http://identifiers.org/adw>
rdf:type :DataCollection ;
rdfs:label "Animal Diversity Web" ;
rdfs:comment "Animal Diversity Web (ADW) is an online database of animal natural history, distribution, classification, and conservation biology." ;
dct:source mirc:00000492 ;
foaf:homepage <http://animaldiversity.ummz.umich.edu/> .
<http://animaldiversity.ummz.umich.edu/>
dct:publisher mirr:00100633 .
<http://identifiers.org/affy.probeset>
rdf:type :DataCollection ;
rdfs:label "Affymetrix Probeset" ;
rdfs:comment "An Affymetrix ProbeSet is a collection of up to 11 short (~22 nucleotide) microarray probes designed to measure a single gene or a family of genes as a unit. Multiple probe sets may be available for each gene under consideration." ;
dct:source mirc:00000394 ;
foaf:homepage <http://www.affymetrix.com/>, <http://cu.affymetrix.bio2rdf.org/fct/> .
<http://www.affymetrix.com/>
dct:publisher mirr:00100514 .
<http://cu.affymetrix.bio2rdf.org/fct/>
dct:publisher mirr:00100672 .
<http://identifiers.org/aftol.taxonomy>
rdf:type :DataCollection ;
rdfs:label "AFTOL" ;
rdfs:comment "The Assembling the Fungal Tree of Life (AFTOL) project is dedicated to significantly enhancing our understanding of the evolution of the Kingdom Fungi, which represents one of the major clades of life. There are roughly 80,000 described species of Fungi, but the actual diversity in the group has been estimated to be about 1.5 million species." ;
dct:source mirc:00000411 ;
foaf:homepage <http://aftol.org/data.php> .
<http://aftol.org/data.php>
dct:publisher mirr:00100533 .
<http://identifiers.org/agricola>
rdf:type :DataCollection ;
rdfs:label "AGRICOLA" ;
rdfs:comment "AGRICOLA (AGRICultural OnLine Access) serves as the catalog and index to the collections of the National Agricultural Library, as well as a primary public source for world-wide access to agricultural information. The database covers materials in all formats and periods, including printed works from as far back as the 15th century." ;
dct:source mirc:00000589 ;
foaf:homepage <http://agricola.nal.usda.gov/> .
<http://agricola.nal.usda.gov/>
dct:publisher mirr:00100789 .
<http://identifiers.org/allergome>
rdf:type :DataCollection ;
rdfs:label "Allergome" ;
rdfs:comment "Allergome is a repository of data related to all IgE-binding compounds. Its purpose is to collect a list of allergenic sources and molecules by using the widest selection criteria and sources." ;
dct:source mirc:00000334 ;
foaf:homepage <http://www.allergome.org/> .
<http://www.allergome.org/>
dct:publisher mirr:00100429 .
<http://identifiers.org/amoebadb>
rdf:type :DataCollection ;
rdfs:label "AmoebaDB" ;
rdfs:comment "AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera." ;
dct:source mirc:00000148 ;
foaf:homepage <http://amoebadb.org/amoeba/> .
<http://amoebadb.org/amoeba/>
dct:publisher mirr:00100193 .
<http://identifiers.org/antibodyregistry>
rdf:type :DataCollection ;
rdfs:label "Antibody Registry" ;
rdfs:comment "The Antibody Registry provides identifiers for antibodies used in publications. It lists commercial antibodies from numerous vendors, each assigned with a unique identifier. Unlisted antibodies can be submitted by providing the catalog number and vendor information." ;
dct:source mirc:00000516 ;
foaf:homepage <http://antibodyregistry.org/> .
<http://antibodyregistry.org/>
dct:publisher mirr:00100664 .
<http://identifiers.org/antweb>
rdf:type :DataCollection ;
rdfs:label "AntWeb" ;
rdfs:comment "AntWeb is a website documenting the known species of ants, with records for each species linked to their geographical distribution, life history, and includes pictures." ;
dct:source mirc:00000146 ;
foaf:homepage <http://www.antweb.org/> .
<http://www.antweb.org/>
dct:publisher mirr:00100190 .
<http://identifiers.org/aop>
rdf:type :DataCollection ;
rdfs:label "AOPWiki" ;
rdfs:comment "International repository of Adverse Outcome Pathways." ;
dct:source mirc:00000617 ;
foaf:homepage <https://aopwiki.org/> .
<https://aopwiki.org/>
dct:publisher mirr:00100821 .
<http://identifiers.org/apd>
rdf:type :DataCollection ;
rdfs:label "APD" ;
rdfs:comment "The antimicrobial peptide database (APD) provides information on anticancer, antiviral, antifungal and antibacterial peptides." ;
dct:source mirc:00000278 ;
foaf:homepage <http://aps.unmc.edu/AP/> .
<http://aps.unmc.edu/AP/>
dct:publisher mirr:00100359 .
<http://identifiers.org/aphidbase.transcript>
rdf:type :DataCollection ;
rdfs:label "AphidBase Transcript" ;
rdfs:comment "AphidBase is a centralized bioinformatic resource that was developed to facilitate community annotation of the pea aphid genome by the International Aphid Genomics Consortium (IAGC). The AphidBase Information System was designed to organize and distribute genomic data and annotations for a large international community. This collection references the transcript report, which describes genomic location, sequence and exon information." ;
dct:source mirc:00000393 ;
foaf:homepage <http://www.aphidbase.com/aphidbase> .
<http://www.aphidbase.com/aphidbase>
dct:publisher mirr:00100513 .
<http://identifiers.org/apid.interactions>
rdf:type :DataCollection ;
rdfs:label "APID Interactomes" ;
rdfs:comment "APID (Agile Protein Interactomes DataServer) provides information on the protein interactomes of numerous organisms, based on the integration of known experimentally validated protein-protein physical interactions (PPIs). Interactome data includes a report on quality levels and coverage over the proteomes for each organism included. APID integrates PPIs from primary databases of molecular interactions (BIND, BioGRID, DIP, HPRD, IntAct, MINT) and also from experimentally resolved 3D structures (PDB) where more than two distinct proteins have been identified. This collection references protein interactors, through a UniProt identifier." ;
dct:source mirc:00000576 ;
foaf:homepage <http://cicblade.dep.usal.es:8080/APID/> .
<http://cicblade.dep.usal.es:8080/APID/>
dct:publisher mirr:00100769 .
<http://identifiers.org/arachnoserver>
rdf:type :DataCollection ;
rdfs:label "ArachnoServer" ;
rdfs:comment "ArachnoServer (www.arachnoserver.org) is a manually curated database providing information on the sequence, structure and biological activity of protein toxins from spider venoms. It include a molecular target ontology designed specifically for venom toxins, as well as current and historic taxonomic information." ;
dct:source mirc:00000193 ;
foaf:homepage <http://www.arachnoserver.org/> .
<http://www.arachnoserver.org/>
dct:publisher mirr:00100250 .
<http://identifiers.org/ardb>
rdf:type :DataCollection ;
rdfs:label "Antibiotic Resistance Genes Database" ;
rdfs:comment "The Antibiotic Resistance Genes Database (ARDB) is a manually curated database which characterises genes involved in antibiotic resistance. Each gene and resistance type is annotated with information, including resistance profile, mechanism of action, ontology, COG and CDD annotations, as well as external links to sequence and protein databases. This collection references resistance genes." ;
dct:source mirc:00000522 ;
foaf:homepage <http://ardb.cbcb.umd.edu/> .
<http://ardb.cbcb.umd.edu/>
dct:publisher mirr:00100678 .
<http://identifiers.org/ark>
rdf:type :DataCollection ;
rdfs:label "ARK" ;
rdfs:comment "An Archival Resource Key (ARK) is a Uniform Resource Locator (URL) that is a multi-purpose persistent identifier for information objects of any type." ;
dct:source mirc:00000592 ;
foaf:homepage <http://n2t.net/> .
<http://n2t.net/>
dct:publisher mirr:00100792 .
<http://identifiers.org/arrayexpress>
rdf:type :DataCollection ;
rdfs:label "ArrayExpress" ;
rdfs:comment "ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations." ;
dct:source mirc:00000036 ;
foaf:homepage <http://www.ebi.ac.uk/arrayexpress/>, <https://www.omicsdi.org/> .
<http://www.ebi.ac.uk/arrayexpress/>
dct:publisher mirr:00100061 .
<https://www.omicsdi.org/>
dct:publisher mirr:00100854 .
<http://identifiers.org/arrayexpress.platform>
rdf:type :DataCollection ;
rdfs:label "ArrayExpress Platform" ;
rdfs:comment "ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations.This collection references the specific platforms used in the generation of experimental results." ;
dct:source mirc:00000294 ;
foaf:homepage <http://www.ebi.ac.uk/arrayexpress/> .
<http://www.ebi.ac.uk/arrayexpress/>
dct:publisher mirr:00100376 .
<http://identifiers.org/arraymap>
rdf:type :DataCollection ;
rdfs:label "ArrayMap" ;
rdfs:comment "arrayMap is a collection of pre-processed oncogenomic array data sets and CNA (somatic copy number aberrations) profiles. CNA are a type of mutation commonly found in cancer genomes. arrayMap data is assembled from public repositories and supplemented with additional sources, using custom curation pipelines. This information has been mapped to multiple editions of the reference human genome." ;
dct:source mirc:00000621 ;
foaf:homepage <https://www.arraymap.org> .
<https://www.arraymap.org>
dct:publisher mirr:00100825 .
<http://identifiers.org/arxiv>
rdf:type :DataCollection ;
rdfs:label "arXiv" ;
rdfs:comment "arXiv is an e-print service in the fields of physics, mathematics, non-linear science, computer science, and quantitative biology." ;
dct:source mirc:00000035 ;
foaf:homepage <http://arxiv.org/> .
<http://arxiv.org/>
dct:publisher mirr:00100060 .
<http://identifiers.org/asap>
rdf:type :DataCollection ;
rdfs:label "ASAP" ;
rdfs:comment "ASAP (a systematic annotation package for community analysis of genomes) stores bacterial genome sequence and functional characterization data. It includes multiple genome sequences at various stages of analysis, corresponding experimental data and access to collections of related genome resources." ;
dct:source mirc:00000283 ;
foaf:homepage <http://asap.ahabs.wisc.edu/asap/home.php> .
<http://asap.ahabs.wisc.edu/asap/home.php>
dct:publisher mirr:00100364 .
<http://identifiers.org/ascl>
rdf:type :DataCollection ;
rdfs:label "Astrophysics Source Code Library" ;
rdfs:comment "The Astrophysics Source Code Library (ASCL) is a free online registry for software that have been used in research that has appeared in, or been submitted to, peer-reviewed publications. The ASCL is indexed by the SAO/NASA Astrophysics Data System (ADS) and Web of Science's Data Citation Index (WoS DCI), and is citable by using the unique ascl ID assigned to each code. The ascl ID can be used to link to the code entry by prefacing the number with ascl.net (i.e., ascl.net/1201.001)." ;
dct:source mirc:00000641 ;
foaf:homepage <http://ascl.net/> .
<http://ascl.net/>
dct:publisher mirr:00100846 .
<http://identifiers.org/aspgd.locus>
rdf:type :DataCollection ;
rdfs:label "AspGD Locus" ;
rdfs:comment "The Aspergillus Genome Database (AspGD) is a repository for information relating to fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. This collection references gene information." ;
dct:source mirc:00000412 ;
foaf:homepage <http://www.aspgd.org/> .
<http://www.aspgd.org/>
dct:publisher mirr:00100534 .
<http://identifiers.org/aspgd.protein>
rdf:type :DataCollection ;
rdfs:label "AspGD Protein" ;
rdfs:comment "The Aspergillus Genome Database (AspGD) is a repository for information relating to fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. This collection references protein information." ;
dct:source mirc:00000413 ;
foaf:homepage <http://www.aspgd.org/> .
<http://www.aspgd.org/>
dct:publisher mirr:00100535 .
<http://identifiers.org/atc>
rdf:type :DataCollection ;
rdfs:label "Anatomical Therapeutic Chemical" ;
rdfs:comment "The Anatomical Therapeutic Chemical (ATC) classification system, divides active substances into different groups according to the organ or system on which they act and their therapeutic, pharmacological and chemical properties. Drugs are classified in groups at five different levels; Drugs are divided into fourteen main groups (1st level), with pharmacological/therapeutic subgroups (2nd level). The 3rd and 4th levels are chemical/pharmacological/therapeutic subgroups and the 5th level is the chemical substance. The Anatomical Therapeutic Chemical (ATC) classification system and the Defined Daily Dose (DDD) is a tool for exchanging and comparing data on drug use at international, national or local levels." ;
dct:source mirc:00000088 ;
foaf:homepage <http://www.whocc.no/atc_ddd_index/> .
<http://www.whocc.no/atc_ddd_index/>
dct:publisher mirr:00100119 .
<http://identifiers.org/atcc>
rdf:type :DataCollection ;
rdfs:label "ATCC" ;
rdfs:comment "The American Type Culture Collection (ATCC) is a private, nonprofit biological resource center whose mission focuses on the acquisition, authentication, production, preservation, development and distribution of standard reference microorganisms, cell lines and other materials for research in the life sciences." ;
dct:source mirc:00000284 ;
foaf:homepage <http://www.atcc.org/> .
<http://www.atcc.org/>
dct:publisher mirr:00100365 .
<http://identifiers.org/atcvet>
rdf:type :DataCollection ;
rdfs:label "Anatomical Therapeutic Chemical Vetinary" ;
rdfs:comment "The ATCvet system for the classification of veterinary medicines is based on the same overall principles as the ATC system for substances used in human medicine. In ATCvet systems, preparations are divided into groups, according to their therapeutic use. First, they are divided into 15 anatomical groups (1st level), classified as QA-QV in the ATCvet system, on the basis of their main therapeutic use." ;
dct:source mirc:00000267 ;
foaf:homepage <http://www.whocc.no/atcvet/atcvet_index/> .
<http://www.whocc.no/atcvet/atcvet_index/>
dct:publisher mirr:00100344 .
<http://identifiers.org/atfdb.family>
rdf:type :DataCollection ;
rdfs:label "Animal TFDB Family" ;
rdfs:comment "The Animal Transcription Factor DataBase (AnimalTFDB) classifies TFs in sequenced animal genomes, as well as collecting the transcription co-factors and chromatin remodeling factors of those genomes. This collections refers to transcription factor families, and the species in which they are found." ;
dct:source mirc:00000316 ;
foaf:homepage <http://www.bioguo.org/AnimalTFDB/family_index.php> .
<http://www.bioguo.org/AnimalTFDB/family_index.php>
dct:publisher mirr:00100399 .
<http://identifiers.org/autdb>
rdf:type :DataCollection ;
rdfs:label "AutDB" ;
rdfs:comment "AutDB is a curated database for autism research. It is built on information extracted from the studies on molecular genetics and biology of Autism Spectrum Disorders (ASD). The four modules of AutDB include information on Human Genes, Animal models, Protein Interactions (PIN) and Copy Number Variants (CNV) respectively. It provides an annotated list of ASD candidate genes in the form of reference dataset for interrogating molecular mechanisms underlying the disorder." ;
dct:source mirc:00000415 ;
foaf:homepage <http://autism.mindspec.org/autdb/> .
<http://autism.mindspec.org/autdb/>
dct:publisher mirr:00100538 .
<http://identifiers.org/bacmap.biog>
rdf:type :DataCollection ;
rdfs:label "BacMap Biography" ;
rdfs:comment "BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references 'biography' information." ;
dct:source mirc:00000361 ;
foaf:homepage <http://bacmap.wishartlab.com/> .
<http://bacmap.wishartlab.com/>
dct:publisher mirr:00100459 .
<http://identifiers.org/bacmap.map>
rdf:type :DataCollection ;
rdfs:label "BacMap Map" ;
rdfs:comment "BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references genome map information." ;
dct:source mirc:00000416 ;
foaf:homepage <http://bacmap.wishartlab.com/> .
<http://bacmap.wishartlab.com/>
dct:publisher mirr:00100539 .
<http://identifiers.org/bao>
rdf:type :DataCollection ;
rdfs:label "BioAssay Ontology" ;
rdfs:comment "The BioAssay Ontology (BAO) describes chemical biology screening assays and their results including high-throughput screening (HTS) data for the purpose of categorizing assays and data analysis." ;
dct:source mirc:00000597 ;
foaf:homepage <http://bioportal.bioontology.org/ontologies/BAO/> .
<http://bioportal.bioontology.org/ontologies/BAO/>
dct:publisher mirr:00100798 .
<http://identifiers.org/bdgp.est>
rdf:type :DataCollection ;
rdfs:label "BDGP EST" ;
rdfs:comment "The BDGP EST database collects the expressed sequence tags (ESTs) derived from a variety of tissues and developmental stages for Drosophila melanogaster. All BDGP ESTs are available at dbEST (NCBI)." ;
dct:source mirc:00000285 ;
foaf:homepage <http://www.ncbi.nlm.nih.gov/dbEST/index.html> .
<http://www.ncbi.nlm.nih.gov/dbEST/index.html>
dct:publisher mirr:00100366 .
<http://identifiers.org/bdgp.insertion>
rdf:type :DataCollection ;
rdfs:label "BDGP insertion DB" ;
rdfs:comment "BDGP gene disruption collection provides a public resource of gene disruptions of Drosophila genes using a single transposable element." ;
dct:source mirc:00000156 ;
foaf:homepage <http://flypush.imgen.bcm.tmc.edu/pscreen/> .
<http://flypush.imgen.bcm.tmc.edu/pscreen/>
dct:publisher mirr:00100201 .
<http://identifiers.org/beetlebase>
rdf:type :DataCollection ;
rdfs:label "BeetleBase" ;
rdfs:comment "BeetleBase is a comprehensive sequence database and community resource for Tribolium genetics, genomics and developmental biology. It incorporates information about genes, mutants, genetic markers, expressed sequence tags and publications." ;
dct:source mirc:00000157 ;
foaf:homepage <http://beetlebase.org/> .
<http://beetlebase.org/>
dct:publisher mirr:00100202 .
<http://identifiers.org/begdb>
rdf:type :DataCollection ;
rdfs:label "Benchmark Energy & Geometry Database" ;
rdfs:comment "The Benchmark Energy & Geometry Database (BEGDB) collects results of highly accurate quantum mechanics (QM) calculations of molecular structures, energies and properties. These data can serve as benchmarks for testing and parameterization of other computational methods." ;
dct:source mirc:00000622 ;
foaf:homepage <http://www.begdb.com> .
<http://www.begdb.com>
dct:publisher mirr:00100826 .
<http://identifiers.org/bgee.family>
rdf:type :DataCollection ;
rdfs:label "Bgee family" ;
rdfs:comment "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to expression across species." ;
dct:source mirc:00000417 ;
foaf:homepage <http://bgee.unil.ch/bgee/bgee> .
<http://bgee.unil.ch/bgee/bgee>
dct:publisher mirr:00100540 .
<http://identifiers.org/bgee.gene>
rdf:type :DataCollection ;
rdfs:label "Bgee gene" ;
rdfs:comment "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to expression within anatomical structures within a species." ;
dct:source mirc:00000418 ;
foaf:homepage <http://bgee.unil.ch/bgee/bgee> .
<http://bgee.unil.ch/bgee/bgee>
dct:publisher mirr:00100541 .
<http://identifiers.org/bgee.organ>
rdf:type :DataCollection ;
rdfs:label "Bgee organ" ;
rdfs:comment "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to anatomical structures." ;
dct:source mirc:00000420 ;
foaf:homepage <http://bgee.unil.ch/bgee/bgee> .
<http://bgee.unil.ch/bgee/bgee>
dct:publisher mirr:00100543 .
<http://identifiers.org/bgee.stage>
rdf:type :DataCollection ;
rdfs:label "Bgee stage" ;
rdfs:comment "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to developmental stages." ;
dct:source mirc:00000419 ;
foaf:homepage <http://bgee.unil.ch/bgee/bgee> .
<http://bgee.unil.ch/bgee/bgee>
dct:publisher mirr:00100542 .
<http://identifiers.org/bigg.compartment>
rdf:type :DataCollection ;
rdfs:label "BiGG Compartment" ;
rdfs:comment "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references model compartments." ;
dct:source mirc:00000555 ;
foaf:homepage <http://bigg.ucsd.edu/compartments/> .
<http://bigg.ucsd.edu/compartments/>
dct:publisher mirr:00100732 .
<http://identifiers.org/bigg.metabolite>
rdf:type :DataCollection ;
rdfs:label "BiGG Metabolite" ;
rdfs:comment "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual metabolotes." ;
dct:source mirc:00000556 ;
foaf:homepage <http://bigg.ucsd.edu/universal/metabolites> .
<http://bigg.ucsd.edu/universal/metabolites>
dct:publisher mirr:00100733 .
<http://identifiers.org/bigg.model>
rdf:type :DataCollection ;
rdfs:label "BiGG Model" ;
rdfs:comment "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual models." ;
dct:source mirc:00000554 ;
foaf:homepage <http://bigg.ucsd.edu/models> .
<http://bigg.ucsd.edu/models>
dct:publisher mirr:00100731 .
<http://identifiers.org/bigg.reaction>
rdf:type :DataCollection ;
rdfs:label "BiGG Reaction" ;
rdfs:comment "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references reactions." ;
dct:source mirc:00000557 ;
foaf:homepage <http://bigg.ucsd.edu/universal/reactions> .
<http://bigg.ucsd.edu/universal/reactions>
dct:publisher mirr:00100734 .
<http://identifiers.org/bindingDB>
rdf:type :DataCollection ;
rdfs:label "BindingDB" ;
rdfs:comment "BindingDB is a public, web-accessible database of measured binding affinities, focusing chiefly on the interactions of protein considered to be drug-targets with small, drug-like molecules." ;
dct:source mirc:00000264 ;
foaf:homepage <http://www.bindingdb.org/bind/index.jsp> .
<http://www.bindingdb.org/bind/index.jsp>
dct:publisher mirr:00100340 .
<http://identifiers.org/biocarta.pathway>
rdf:type :DataCollection ;
rdfs:label "BioCarta Pathway" ;
rdfs:comment "BioCarta is a supplier and distributor of characterized reagents and assays for biopharmaceutical and academic research. It catalogs community produced online maps depicting molecular relationships from areas of active research, generating classical pathways as well as suggestions for new pathways. This collections references pathway maps." ;
dct:source mirc:00000421 ;
foaf:homepage <http://www.biocarta.com/> .
<http://www.biocarta.com/>
dct:publisher mirr:00100544 .
<http://identifiers.org/biocatalogue.service>
rdf:type :DataCollection ;
rdfs:label "BioCatalogue" ;
rdfs:comment "The BioCatalogue provides a common interface for registering, browsing and annotating Web Services to the Life Science community. Registered services are monitored, allowing the identification of service problems and changes and the filtering-out of unavailable or unreliable resources. BioCatalogue is free to use, for all." ;
dct:source mirc:00000140 ;
foaf:homepage <http://www.biocatalogue.org/> .
<http://www.biocatalogue.org/>
dct:publisher mirr:00100182 .
<http://identifiers.org/biocyc>
rdf:type :DataCollection ;
rdfs:label "BioCyc" ;
rdfs:comment "BioCyc is a collection of Pathway/Genome Databases (PGDBs) which provides an electronic reference source on the genomes and metabolic pathways of sequenced organisms." ;
dct:source mirc:00000194 ;
foaf:homepage <http://biocyc.org> .
<http://biocyc.org>
dct:publisher mirr:00100251 .
<http://identifiers.org/biogrid>
rdf:type :DataCollection ;
rdfs:label "BioGRID" ;
rdfs:comment "BioGRID is a database of physical and genetic interactions in Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens, and Schizosaccharomyces pombe." ;
dct:source mirc:00000058 ;
foaf:homepage <http://thebiogrid.org/> .
<http://thebiogrid.org/>
dct:publisher mirr:00100086 .
<http://identifiers.org/biomaps>
rdf:type :DataCollection ;
rdfs:label "Melanoma Molecular Map Project Biomaps" ;
rdfs:comment "A collection of molecular interaction maps and pathways involved in cancer development and progression with a focus on melanoma." ;
dct:source mirc:00000075 ;
foaf:homepage <http://www.mmmp.org/MMMP/public/biomap/listBiomap.mmmp> .
<http://www.mmmp.org/MMMP/public/biomap/listBiomap.mmmp>
dct:publisher mirr:00100105 .
<http://identifiers.org/biominder>
rdf:type :DataCollection ;
rdfs:label "Bio-MINDER Tissue Database" ;
rdfs:comment "Database of the dielectric properties of biological tissues." ;
dct:source mirc:00000634 ;
foaf:homepage <https://datalab.rwth-aachen.de/MINDER> .
<https://datalab.rwth-aachen.de/MINDER>
dct:publisher mirr:00100839 .
<http://identifiers.org/biomodels.db>
rdf:type :DataCollection ;
rdfs:label "BioModels Database" ;
rdfs:comment "BioModels Database is a data resource that allows biologists to store, search and retrieve published mathematical models of biological interests." ;
dct:source mirc:00000007 ;
foaf:homepage <http://www.ebi.ac.uk/biomodels/>, <http://biomodels.caltech.edu/>, <http://cu.biomodels.bio2rdf.org/fct/>, <https://www.omicsdi.org/> .
<http://www.ebi.ac.uk/biomodels/>
dct:publisher mirr:00100006 .
<http://biomodels.caltech.edu/>
dct:publisher mirr:00100107 .
<http://cu.biomodels.bio2rdf.org/fct/>
dct:publisher mirr:00100674 .
<https://www.omicsdi.org/>
dct:publisher mirr:00100855 .
<http://identifiers.org/biomodels.kisao>
rdf:type :DataCollection ;
rdfs:label "KiSAO" ;
rdfs:comment "The Kinetic Simulation Algorithm Ontology (KiSAO) is an ontology that describes simulation algorithms and methods used for biological kinetic models, and the relationships between them. This provides a means to unambiguously refer to simulation algorithms when describing a simulation experiment." ;
dct:source mirc:00000108 ;
foaf:homepage <http://bioportal.bioontology.org/ontologies/KISAO>, <http://www.ebi.ac.uk/ols/ontologies/kisao> .
<http://bioportal.bioontology.org/ontologies/KISAO>
dct:publisher mirr:00100141 .
<http://www.ebi.ac.uk/ols/ontologies/kisao>
dct:publisher mirr:00100757 .
<http://identifiers.org/biomodels.teddy>
rdf:type :DataCollection ;
rdfs:label "TEDDY" ;
rdfs:comment "The Terminology for Description of Dynamics (TEDDY) is an ontology for dynamical behaviours, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems Biology and Synthetic Biology." ;
dct:source mirc:00000107 ;
foaf:homepage <http://teddyontology.sourceforge.net/>, <http://www.ebi.ac.uk/ols/ontologies/teddy> .
<http://teddyontology.sourceforge.net/>
dct:publisher mirr:00100140 .
<http://www.ebi.ac.uk/ols/ontologies/teddy>
dct:publisher mirr:00100761 .
<http://identifiers.org/biomodels.vocabulary>
rdf:type :DataCollection ;
rdfs:label "SBML RDF Vocabulary" ;
rdfs:comment "Vocabulary used in the RDF representation of SBML models." ;
dct:source mirc:00000514 ;
foaf:homepage <http://biomodels.net/rdf/vocabulary.rdf> .
<http://biomodels.net/rdf/vocabulary.rdf>
dct:publisher mirr:00100661 .
<http://identifiers.org/bionumbers>
rdf:type :DataCollection ;
rdfs:label "BioNumbers" ;
rdfs:comment "BioNumbers is a database of key numberical information that may be used in molecular biology. Along with the numbers, it contains references to the original literature, useful comments, and related numeric data." ;
dct:source mirc:00000101 ;
foaf:homepage <http://www.bionumbers.hms.harvard.edu/search.aspx> .
<http://www.bionumbers.hms.harvard.edu/search.aspx>
dct:publisher mirr:00100132 .
<http://identifiers.org/bioportal>
rdf:type :DataCollection ;
rdfs:label "BioPortal" ;
rdfs:comment "BioPortal is an open repository of biomedical ontologies that provides access via Web services and Web browsers to ontologies developed in OWL, RDF, OBO format and Protégé frames. BioPortal functionality includes the ability to browse, search and visualize ontologies." ;
dct:source mirc:00000187 ;
foaf:homepage <http://bioportal.bioontology.org/> .
<http://bioportal.bioontology.org/>
dct:publisher mirr:00100244 .
<http://identifiers.org/bioproject>
rdf:type :DataCollection ;
rdfs:label "BioProject" ;
rdfs:comment "BioProject provides an organizational framework to access metadata about research projects and the data from the projects that are deposited into different databases. It provides information about a project’s scope, material, objectives, funding source and general relevance categories." ;
dct:source mirc:00000349 ;
foaf:homepage <http://trace.ddbj.nig.ac.jp/bioproject/>, <http://www.ncbi.nlm.nih.gov/bioproject>, <http://www.ebi.ac.uk/ena/> .
<http://trace.ddbj.nig.ac.jp/bioproject/>
dct:publisher mirr:00100444 .
<http://www.ncbi.nlm.nih.gov/bioproject>
dct:publisher mirr:00100445 .
<http://www.ebi.ac.uk/ena/>
dct:publisher mirr:00100446 .
<http://identifiers.org/biosample>
rdf:type :DataCollection ;
rdfs:label "BioSample" ;
rdfs:comment "The BioSample Database stores information about biological samples used in molecular experiments, such as sequencing, gene expression or proteomics. It includes reference samples, such as cell lines, which are repeatedly used in experiments. Accession numbers for the reference samples will be exchanged with a similar database at NCBI, and DDBJ (Japan). Record access may be affected due to different release cycles and inter-institutional synchronisation." ;
dct:source mirc:00000350 ;
foaf:homepage <http://www.ebi.ac.uk/biosamples/>, <http://www.ncbi.nlm.nih.gov/biosample>, <http://trace.ddbj.nig.ac.jp/biosample/> .
<http://www.ebi.ac.uk/biosamples/>
dct:publisher mirr:00100447 .
<http://www.ncbi.nlm.nih.gov/biosample>
dct:publisher mirr:00100706 .
<http://trace.ddbj.nig.ac.jp/biosample/>
dct:publisher mirr:00100707 .
<http://identifiers.org/biosystems>
rdf:type :DataCollection ;
rdfs:label "BioSystems" ;
rdfs:comment "The NCBI BioSystems database centralizes and cross-links existing biological systems databases, increasing their utility and target audience by integrating their pathways and systems into NCBI resources." ;
dct:source mirc:00000097 ;
foaf:homepage <http://www.ncbi.nlm.nih.gov/biosystems/> .
<http://www.ncbi.nlm.nih.gov/biosystems/>
dct:publisher mirr:00100128 .
<http://identifiers.org/biotools>
rdf:type :DataCollection ;
rdfs:label "BioTools" ;
rdfs:comment "Tool and data services registry." ;
dct:source mirc:00000616 ;
foaf:homepage <https://bio.tools/> .
<https://bio.tools/>
dct:publisher mirr:00100820 .
<http://identifiers.org/bitterdb.cpd>
rdf:type :DataCollection ;
rdfs:label "BitterDB Compound" ;
rdfs:comment "BitterDB is a database of compounds reported to taste bitter to humans. The compounds can be searched by name, chemical structure, similarity to other bitter compounds, association with a particular human bitter taste receptor, and so on. The database also contains information on mutations in bitter taste receptors that were shown to influence receptor activation by bitter compounds. The aim of BitterDB is to facilitate studying the chemical features associated with bitterness. This collection references compounds." ;
dct:source mirc:00000348 ;
foaf:homepage <http://bitterdb.agri.huji.ac.il/dbbitter.php> .
<http://bitterdb.agri.huji.ac.il/dbbitter.php>
dct:publisher mirr:00100443 .
<http://identifiers.org/bitterdb.rec>
rdf:type :DataCollection ;
rdfs:label "BitterDB Receptor" ;
rdfs:comment "BitterDB is a database of compounds reported to taste bitter to humans. The compounds can be searched by name, chemical structure, similarity to other bitter compounds, association with a particular human bitter taste receptor, and so on. The database also contains information on mutations in bitter taste receptors that were shown to influence receptor activation by bitter compounds. The aim of BitterDB is to facilitate studying the chemical features associated with bitterness. This collection references receptors." ;
dct:source mirc:00000347 ;
foaf:homepage <http://bitterdb.agri.huji.ac.il/dbbitter.php> .
<http://bitterdb.agri.huji.ac.il/dbbitter.php>
dct:publisher mirr:00100442 .
<http://identifiers.org/bold.taxonomy>
rdf:type :DataCollection ;
rdfs:label "BOLD Taxonomy" ;
rdfs:comment "The Barcode of Life Data System (BOLD) is an informatics workbench aiding the acquisition, storage, analysis and publication of DNA barcode records. The associated taxonomy browser shows the progress of DNA barcoding and provides sample collection site distribution, and taxon occurence information." ;
dct:source mirc:00000158 ;
foaf:homepage <http://www.boldsystems.org/> .
<http://www.boldsystems.org/>
dct:publisher mirr:00100203 .
<http://identifiers.org/brenda>
rdf:type :DataCollection ;
rdfs:label "BRENDA" ;
rdfs:comment "BRENDA is a collection of enzyme functional data available to the scientific community. Data on enzyme function are extracted directly from the primary literature The database covers information on classification and nomenclature, reaction and specificity, functional parameters, occurrence, enzyme structure and stability, mutants and enzyme engineering, preparation and isolation, the application of enzymes, and ligand-related data." ;
dct:source mirc:00000071 ;
foaf:homepage <http://www.brenda-enzymes.org/> .
<http://www.brenda-enzymes.org/>
dct:publisher mirr:00100101 .
<http://identifiers.org/broad>
rdf:type :DataCollection ;
rdfs:label "Broad Fungal Genome Initiative" ;
rdfs:comment "Magnaporthe grisea, the causal agent of rice blast disease, is one of the most devasting threats to food security worldwide and is a model organism for studying fungal phytopathogenicity and host-parasite interactions. The Magnaporthe comparative genomics database provides accesses to multiple fungal genomes from the Magnaporthaceae family to facilitate the comparative analysis. As part of the Broad Fungal Genome Initiative, the Magnaporthe comparative project includes the finished M. oryzae (formerly M. grisea) genome, as well as the draft assemblies of Gaeumannomyces graminis var. tritici and M. poae." ;
dct:source mirc:00000438 ;
foaf:homepage <http://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/> .
<http://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/>
dct:publisher mirr:00100569 .
<http://identifiers.org/bto>
rdf:type :DataCollection ;
rdfs:label "Brenda Tissue Ontology" ;
rdfs:comment "The Brenda tissue ontology is a structured controlled vocabulary eastablished to identify the source of an enzyme cited in the Brenda enzyme database. It comprises terms of tissues, cell lines, cell types and cell cultures from uni- and multicellular organisms." ;
dct:source mirc:00000111 ;
foaf:homepage <http://www.ebi.ac.uk/ols/ontologies/bto>, <http://bioportal.bioontology.org/ontologies/BTO> .
<http://www.ebi.ac.uk/ols/ontologies/bto>
dct:publisher mirr:00100144 .
<http://bioportal.bioontology.org/ontologies/BTO>
dct:publisher mirr:00100233 .
<http://identifiers.org/bugbase.expt>
rdf:type :DataCollection ;
rdfs:label "BugBase Expt" ;
rdfs:comment "BugBase is a MIAME-compliant microbial gene expression and comparative genomic database. It stores experimental annotation and multiple raw and analysed data formats, as well as protocols for bacterial microarray designs. This collection references microarray experiments." ;
dct:source mirc:00000404 ;
foaf:homepage <http://bugs.sgul.ac.uk/E-BUGS> .
<http://bugs.sgul.ac.uk/E-BUGS>
dct:publisher mirr:00100524 .
<http://identifiers.org/bugbase.protocol>
rdf:type :DataCollection ;
rdfs:label "BugBase Protocol" ;
rdfs:comment "BugBase is a MIAME-compliant microbial gene expression and comparative genomic database. It stores experimental annotation and multiple raw and analysed data formats, as well as protocols for bacterial microarray designs. This collection references design protocols." ;
dct:source mirc:00000403 ;
foaf:homepage <http://bugs.sgul.ac.uk/E-BUGS> .
<http://bugs.sgul.ac.uk/E-BUGS>
dct:publisher mirr:00100523 .
<http://identifiers.org/bykdb>
rdf:type :DataCollection ;
rdfs:label "BYKdb" ;
rdfs:comment "The bacterial tyrosine kinase database (BYKdb) that collects sequences of putative and authentic bacterial tyrosine kinases, providing structural and functional information." ;
dct:source mirc:00000253 ;
foaf:homepage <http://bykdb.ibcp.fr/BYKdb/> .
<http://bykdb.ibcp.fr/BYKdb/>
dct:publisher mirr:00100324 .
<http://identifiers.org/cabri>
rdf:type :DataCollection ;
rdfs:label "CABRI" ;
rdfs:comment "CABRI (Common Access to Biotechnological Resources and Information) is an online service where users can search a number of European Biological Resource Centre catalogues. It lists the availability of a particular organism or genetic resource and defines the set of technical specifications and procedures which should be used to handle it." ;
dct:source mirc:00000261 ;
foaf:homepage <http://www.cabri.org/>, <http://www.be.cabri.org/>, <http://www.fr.cabri.org/> .
<http://www.cabri.org/>
dct:publisher mirr:00100334 .
<http://www.be.cabri.org/>
dct:publisher mirr:00100335 .
<http://www.fr.cabri.org/>
dct:publisher mirr:00100336 .
<http://identifiers.org/cameo>
rdf:type :DataCollection ;
rdfs:label "CAMEO" ;
rdfs:comment "The goal of the CAMEO (Continuous Automated Model EvaluatiOn) community project is to continuously evaluate the accuracy and reliability of protein structure prediction servers, offering scores on tertiary and quaternary structure prediction, model quality estimation, accessible surface area prediction, ligand binding site residue prediction and contact prediction services in a fully automated manner. These predictions are regularly compared against reference structures from PDB." ;
dct:source mirc:00000623 ;
foaf:homepage <https://cameo3d.org> .
<https://cameo3d.org>
dct:publisher mirr:00100827 .
<http://identifiers.org/caps>
rdf:type :DataCollection ;
rdfs:label "CAPS-DB" ;
rdfs:comment "CAPS-DB is a structural classification of helix-cappings or caps compiled from protein structures. The regions of the polypeptide chain immediately preceding or following an alpha-helix are known as Nt- and Ct cappings, respectively. Caps extracted from protein structures have been structurally classified based on geometry and conformation and organized in a tree-like hierarchical classification where the different levels correspond to different properties of the caps." ;
dct:source mirc:00000396 ;
foaf:homepage <http://www.bioinsilico.org/cgi-bin/CAPSDB/staticHTML/home> .
<http://www.bioinsilico.org/cgi-bin/CAPSDB/staticHTML/home>
dct:publisher mirr:00100516 .
<http://identifiers.org/cas>
rdf:type :DataCollection ;
rdfs:label "CAS" ;
rdfs:comment "CAS (Chemical Abstracts Service) is a division of the American Chemical Society and is the producer of comprehensive databases of chemical information." ;
dct:source mirc:00000237 ;
foaf:homepage <http://commonchemistry.org>, <http://www.ncbi.nlm.nih.gov/pccompound> .
<http://commonchemistry.org>
dct:publisher mirr:00100301 .
<http://www.ncbi.nlm.nih.gov/pccompound>
dct:publisher mirr:00100302 .
<http://identifiers.org/cath>
rdf:type :DataCollection ;
rdfs:label "CATH Protein Structural Domain Superfamily" ;
rdfs:comment "CATH is a classification of protein structural domains. We group protein domains into superfamilies when there is sufficient evidence they have diverged from a common ancestor. CATH can be used to predict structural and functional information directly from protein sequence." ;
dct:source mirc:00000612 ;
foaf:homepage <http://www.cathdb.info> .
<http://www.cathdb.info>
dct:publisher mirr:00100816 .
<http://identifiers.org/cath.domain>
rdf:type :DataCollection ;
rdfs:label "CATH domain" ;
rdfs:comment "The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class (secondary structure classification, e.g. mostly alpha), Architecture (classification based on overall shape), Topology (fold family) and Homologous superfamily (protein domains which are thought to share a common ancestor). This colelction is concerned with CATH domains." ;
dct:source mirc:00000210 ;
foaf:homepage <http://www.cathdb.info/> .
<http://www.cathdb.info/>
dct:publisher mirr:00100269 .
<http://identifiers.org/cath.superfamily>
rdf:type :DataCollection ;
rdfs:label "CATH superfamily" ;
rdfs:comment "The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class (secondary structure classification, e.g. mostly alpha), Architecture (classification based on overall shape), Topology (fold family) and Homologous superfamily (protein domains which are thought to share a common ancestor). This colelction is concerned with superfamily classification." ;
dct:source mirc:00000209 ;
foaf:homepage <http://www.cathdb.info/> .
<http://www.cathdb.info/>
dct:publisher mirr:00100268 .
<http://identifiers.org/cattleqtldb>
rdf:type :DataCollection ;
rdfs:label "Animal Genome Cattle QTL" ;
rdfs:comment "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references cattle QTLs." ;
dct:source mirc:00000504 ;
foaf:homepage <http://www.animalgenome.org/cgi-bin/QTLdb/BT/index> .
<http://www.animalgenome.org/cgi-bin/QTLdb/BT/index>
dct:publisher mirr:00100645 .
<http://identifiers.org/cazy>
rdf:type :DataCollection ;
rdfs:label "CAZy" ;
rdfs:comment "The Carbohydrate-Active Enzyme (CAZy) database is a resource specialized in enzymes that build and breakdown complex carbohydrates and glycoconjugates. These enzymes are classified into families based on structural features." ;
dct:source mirc:00000195 ;
foaf:homepage <http://www.cazy.org/> .
<http://www.cazy.org/>
dct:publisher mirr:00100252 .
<http://identifiers.org/ccds>
rdf:type :DataCollection ;
rdfs:label "Consensus CDS" ;
rdfs:comment "The Consensus CDS (CCDS) project is a collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of high quality. The CCDS set is calculated following coordinated whole genome annotation updates carried out by the NCBI, WTSI, and Ensembl. The long term goal is to support convergence towards a standard set of gene annotations." ;
dct:source mirc:00000375 ;
foaf:homepage <http://www.ncbi.nlm.nih.gov/CCDS/> .
<http://www.ncbi.nlm.nih.gov/CCDS/>
dct:publisher mirr:00100477 .
<http://identifiers.org/cco>
rdf:type :DataCollection ;
rdfs:label "Cell Cycle Ontology" ;
rdfs:comment "The Cell Cycle Ontology is an application ontology that captures and integrates detailed knowledge on the cell cycle process." ;
dct:source mirc:00000234 ;
foaf:homepage <http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=CCO>, <http://bioportal.bioontology.org/> .
<http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=CCO>
dct:publisher mirr:00100294 .
<http://bioportal.bioontology.org/>
dct:publisher mirr:00100295 .
<http://identifiers.org/cdd>
rdf:type :DataCollection ;
rdfs:label "Conserved Domain Database" ;
rdfs:comment "The Conserved Domain Database (CDD) is a collection of multiple sequence alignments and derived database search models, which represent protein domains conserved in molecular evolution." ;
dct:source mirc:00000119 ;
foaf:homepage <http://www.ncbi.nlm.nih.gov/sites/entrez?db=cdd> .
<http://www.ncbi.nlm.nih.gov/sites/entrez?db=cdd>
dct:publisher mirr:00100152 .
<http://identifiers.org/cdpd>
rdf:type :DataCollection ;
rdfs:label "Canadian Drug Product Database" ;
rdfs:comment "The Canadian Drug Product Database (DPD) contains product specific information on drugs approved for use in Canada, and includes human pharmaceutical and biological drugs, veterinary drugs and disinfectant products. This information includes 'brand name', 'route of administration' and a Canadian 'Drug Identification Number' (DIN)." ;
dct:source mirc:00000272 ;
foaf:homepage <http://webprod3.hc-sc.gc.ca/dpd-bdpp/index-eng.jsp> .
<http://webprod3.hc-sc.gc.ca/dpd-bdpp/index-eng.jsp>
dct:publisher mirr:00100351 .
<http://identifiers.org/cellimage>
rdf:type :DataCollection ;
rdfs:label "Cell Image Library" ;
rdfs:comment "The Cell: An Image Library™ is a freely accessible, public repository of reviewed and annotated images, videos, and animations of cells from a variety of organisms, showcasing cell architecture, intracellular functionalities, and both normal and abnormal processes." ;
dct:source mirc:00000257 ;
foaf:homepage <http://cellimagelibrary.org/> .
<http://cellimagelibrary.org/>
dct:publisher mirr:00100328 .
<http://identifiers.org/cellosaurus>
rdf:type :DataCollection ;
rdfs:label "Cellosaurus" ;
rdfs:comment "The Cellosaurus is a knowledge resource on cell lines. It attempts to describe all cell lines used in biomedical research. Its scope includes: Immortalized cell lines; naturally immortal cell lines (example: stem cell lines); finite life cell lines when those are distributed and used widely; vertebrate cell line with an emphasis on human, mouse and rat cell lines; and invertebrate (insects and ticks) cell lines. Its scope does not include primary cell lines (with the exception of the finite life cell lines described above) and plant cell lines." ;
dct:source mirc:00000598 ;
foaf:homepage <http://web.expasy.org/cellosaurus/> .
<http://web.expasy.org/cellosaurus/>
dct:publisher mirr:00100799 .
<http://identifiers.org/cgd>
rdf:type :DataCollection ;
rdfs:label "Candida Genome Database" ;
rdfs:comment "The Candida Genome Database (CGD) provides access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans. It collects gene names and aliases, and assigns gene ontology terms to describe the molecular function, biological process, and subcellular localization of gene products." ;
dct:source mirc:00000145 ;
foaf:homepage <http://www.candidagenome.org/> .
<http://www.candidagenome.org/>
dct:publisher mirr:00100189 .
<http://identifiers.org/cgsc>
rdf:type :DataCollection ;
rdfs:label "CGSC Strain" ;
rdfs:comment "The CGSC Database of E. coli genetic information includes genotypes and reference information for the strains in the CGSC collection, the names, synonyms, properties, and map position for genes, gene product information, and information on specific mutations and references to primary literature." ;
dct:source mirc:00000295 ;
foaf:homepage <http://cgsc.biology.yale.edu/index.php> .
<http://cgsc.biology.yale.edu/index.php>
dct:publisher mirr:00100377 .
<http://identifiers.org/charprot>
rdf:type :DataCollection ;
rdfs:label "CharProt" ;
rdfs:comment "CharProt is a database of biochemically characterized proteins designed to support automated annotation pipelines. Entries are annotated with gene name, symbol and various controlled vocabulary terms, including Gene Ontology terms, Enzyme Commission number and TransportDB accession." ;
dct:source mirc:00000341 ;
foaf:homepage <http://www.jcvi.org/charprotdb> .
<http://www.jcvi.org/charprotdb>
dct:publisher mirr:00100436 .
<http://identifiers.org/chebi>