README.md

Copyright 2012-2015 SRI International

http://nitrc.org/projects/ncanda-datacore/

This file is part of the N-CANDA Data Component Software Suite, developed

and distributed by the Data Integration Component of the National

Consortium on Alcohol and NeuroDevelopment in Adolescence, supported by

the U.S. National Institute on Alcohol Abuse and Alcoholism (NIAAA) under

Grant No. 1U01 AA021697

The N-CANDA Data Component Software Suite is free software: you can

redistribute it and/or modify it under the terms of the GNU General Public

License as published by the Free Software Foundation, either version 3 of

the License, or (at your option) any later version.

The N-CANDA Data Component Software Suite is distributed in the hope that it

will be useful, but WITHOUT ANY WARRANTY; without even the implied

warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the

GNU General Public License for more details.

You should have received a copy of the GNU General Public License along

with the N-CANDA Data Component Software Suite. If not, see

http://www.gnu.org/licenses/.

run ./sviewer

Installation of sviewer with full functionality

Step 0) define slicer in sviewer.sh

Step1) install bz2 in Slicer's Python Installation -script below works in python a) Look up location of bz2 file on local python python -c "import bz2; print bz2.file"

b) Look up dir in Slicer python Slicer-build/Slicer --xterm DIR=dirname $(${PYTHONHOME}/bin/python -c "import array; print array.__file__")

c) cp <FILE of Step a)> ${DIR}/bz2.so e.g. cp /usr/lib/python2.7/lib-dynload/bz2.x86_64-linux-gnu.so ${DIR}/bz2.so d) Test that it works ${PYTHONHOME}/bin/python -c "import bz2; print bz2.doc"

Step 2: install nibabel in python a) download nibabel 1.3 https://github.com/nipy/nibabel/archive/1.3.0.tar.gz and untar b) go to nibabel directory and execute cd /data/software/nibabel-1.3.0/ ${PYTHONHOME}/bin/python setup.py install c) ${PYTHONHOME}/bin/python -c "import nibabel; print nibabel.doc"

Step 3: change slicer path in sviewer.sh