DESCRIPTION

Package: CollapsABEL
Type: Package
Title: Generalized CDH (GCDH) Analysis
Version: 0.10.11
Date: 2016-12-11
Author: Kaiyin Zhong, Fan Liu
Maintainer: Kaiyin Zhong <kindlychung@gmail.com>
Depends:
    R (>= 3.1.0),
    rJava (>= 0.9-6)
Imports:
    R.utils,
    RSQLite,
    biganalytics,
    bigmemory,
    collUtils,
    dplyr,
    ggplot2,
    methods,
    stringr,
    stats,
    haplo.stats
Description: Implements a generalized version of the CDH test (<DOI:10.1371/journal.pone.0028145> and <DOI:10.1186/s12859-016-1006-9>)
     for detecting compound heterozygosity on a
    genome-wide level, due to usage of generalized linear models it allows flexible
    analysis of binary and continuous traits with covariates.
License: GPL-3
URL: https://bitbucket.org/kindlychung/collapsabel2/overview
BugReports: https://bitbucket.org/kindlychung/collapsabel2/issues
Suggests:
    testthat
SystemRequirements: PLINK2, Java (>= 8.0), mysql
RoxygenNote: 5.0.1